RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 A0A1B0GW55 424 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 DBX1A6NMT0 343 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 GPR37O15354 613 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 SNAPC5O75971 98 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 LY86O95711 162 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 DUX4L2P0CJ85 424 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 DUX4L3P0CJ86 424 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 DUX4L4P0CJ87 422 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 DUX4L5P0CJ88 424 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 DUX4L6P0CJ89 424 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 DUX4L7P0CJ90 424 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 PSMB6P28072 239 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 RFC3P40938 356 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 CLDN6P56747 220 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 BLOC1S1P78537 153 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 C14orf28Q4W4Y0 310 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 H1FNTQ75WM6 255 aaPredicted RBP8.9□□□□□ -0.99
LIG3-201ENST00000262327 LYPD6Q86Y78 171 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 ZSCAN4Q8NAM6 433 aaPredicted RBP8.9□□□□□ -0.99
LIG3-201ENST00000262327 OR51F2Q8NH61 342 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 KCNK17Q96T54 332 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 GPER1Q99527 375 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 HRH4Q9H3N8 390 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 OR5AC2Q9NZP5 309 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 DUX4Q9UBX2 424 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 MMACHCQ9Y4U1 282 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 RALGAPA1Q6GYQ0 2036 aa8.9□□□□□ -0.99
LIG3-201ENST00000262327 RER1O15258 196 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 OR2T1O43869 369 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 EFNA2O43921 213 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 ZNF205O95201 554 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 CRHP06850 196 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 HCKP08631 526 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 SLC25A4P12235 298 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 ZNF20P17024 532 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 PNLIPRP2P54317 469 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 PRSS12P56730 875 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 NKAPLQ5M9Q1 402 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 NAA40Q86UY6 237 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 SLC22A24Q8N4F4 322 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 SPSB2Q99619 263 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 RNF126Q9BV68 326 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 PARP12Q9H0J9 701 aaKnown RBP8.89□□□□□ -0.99
LIG3-201ENST00000262327 TLNRD1Q9H1K6 362 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 TMEM218A2RU14 115 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 ARGFXA6NJG6 315 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 TMEM200CA6NKL6 621 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 ZNF705EA8MWA4 302 aaPredicted RBP8.89□□□□□ -0.99
LIG3-201ENST00000262327 RAMP1O60894 148 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 CRTAPO75718 401 aaPredicted RBP8.89□□□□□ -0.99
LIG3-201ENST00000262327 FARS2O95363 451 aaKnown RBP8.89□□□□□ -0.99
LIG3-201ENST00000262327 HOXB5P09067 269 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 PVALBP20472 110 aaPredicted RBP8.89□□□□□ -0.99
LIG3-201ENST00000262327 NFYBP25208 207 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 HSD11B1P28845 292 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 GALNSP34059 522 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 SFTPDP35247 375 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 ID4P47928 161 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 SNRPEP62304 92 aaKnown RBP8.89□□□□□ -0.99
LIG3-201ENST00000262327 RNF4P78317 190 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 AIMP2Q13155 320 aaKnown RBP8.89□□□□□ -0.99
LIG3-201ENST00000262327 ARFRP1Q13795 201 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 HAGHLQ6PII5 290 aaPredicted RBP8.89□□□□□ -0.99
LIG3-201ENST00000262327 RNF133Q8WVZ7 376 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 LIN37Q96GY3 246 aaPredicted RBP8.89□□□□□ -0.99
LIG3-201ENST00000262327 ARHGAP5-AS1Q96IT6 56 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 ACKR4Q9NPB9 350 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 UFSP2Q9NUQ7 469 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 ASH2LQ9UBL3 628 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 LOC390937A0A1W2PQ73 354 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 ADAM10O14672 748 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 ISG15P05161 165 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 GIMD1P0DJR0 217 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 GLRA1P23415 457 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 S100A10P60903 97 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 QRFPP83859 136 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 ZNF345Q14585 488 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 CYB5R2Q6BCY4 276 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 ZNF585AQ6P3V2 769 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 OR5D14Q8NGL3 314 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 GLYATL2Q8WU03 294 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 PIK3IP1Q96FE7 263 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 RAB33BQ9H082 229 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 LPAR5Q9H1C0 372 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 C5orf66Q9H5L9 145 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 GPR84Q9NQS5 396 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 PPP1R14DQ9NXH3 145 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 KLRF1Q9NZS2 232 aa8.89□□□□□ -0.99
LIG3-201ENST00000262327 MRPS28Q9Y2Q9 187 aaKnown RBP8.89□□□□□ -0.99
LIG3-201ENST00000262327 A0A1W2PQD3 144 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 ZNF814B7Z6K7 855 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 E9PLN8 166 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 H3BMH7 237 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 KNG1P01042 644 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 IL2RAP01589 272 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 FBP1P09467 338 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 TSPAN7P41732 249 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 PTGFRP43088 359 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 NPBWR1P48145 328 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 CASP6P55212 293 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms