RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 LBX1P52954 281 aa17.7■□□□□ 0.42
LINC00339-211ENST00000641009 ZNF280AP59817 542 aaPredicted RBP17.7■□□□□ 0.42
LINC00339-211ENST00000641009 USP17L1Q7RTZ2 530 aa17.7■□□□□ 0.42
LINC00339-211ENST00000641009 GMLQ99445 158 aa17.7■□□□□ 0.42
LINC00339-211ENST00000641009 PRDM10Q9NQV6 1147 aa17.7■□□□□ 0.42
LINC00339-211ENST00000641009 GGA3Q9NZ52 723 aa17.7■□□□□ 0.42
LINC00339-211ENST00000641009 KLRK1P26718 216 aa17.69■□□□□ 0.42
LINC00339-211ENST00000641009 FOXO4P98177 505 aa17.69■□□□□ 0.42
LINC00339-211ENST00000641009 LEMD3Q9Y2U8 911 aa17.69■□□□□ 0.42
LINC00339-211ENST00000641009 ANKRD18BA2A2Z9 1011 aa17.69■□□□□ 0.42
LINC00339-211ENST00000641009 HSPA8P11142 646 aaKnown RBP17.69■□□□□ 0.42
LINC00339-211ENST00000641009 HHIPL1Q96JK4 782 aa17.69■□□□□ 0.42
LINC00339-211ENST00000641009 MXD3Q9BW11 206 aa17.69■□□□□ 0.42
LINC00339-211ENST00000641009 ANKRD2Q9GZV1 360 aa17.69■□□□□ 0.42
LINC00339-211ENST00000641009 CHMP3Q9Y3E7 222 aa17.69■□□□□ 0.42
LINC00339-211ENST00000641009 ZNF804BA4D1E1 1349 aa17.68■□□□□ 0.42
LINC00339-211ENST00000641009 USP17L8P0C7I0 530 aa17.68■□□□□ 0.42
LINC00339-211ENST00000641009 CHRNDQ07001 517 aa17.68■□□□□ 0.42
LINC00339-211ENST00000641009 SCARF1Q14162 830 aa17.68■□□□□ 0.42
LINC00339-211ENST00000641009 SLC4A10Q6U841 1118 aa17.68■□□□□ 0.42
LINC00339-211ENST00000641009 FBXW7Q969H0 707 aa17.68■□□□□ 0.42
LINC00339-211ENST00000641009 MYOZ2Q9NPC6 264 aa17.68■□□□□ 0.42
LINC00339-211ENST00000641009 GRM8O00222 908 aa17.67■□□□□ 0.42
LINC00339-211ENST00000641009 MAP2K2P36507 400 aa17.67■□□□□ 0.42
LINC00339-211ENST00000641009 HUNKP57058 714 aa17.67■□□□□ 0.42
LINC00339-211ENST00000641009 EPHA10Q5JZY3 1008 aa17.67■□□□□ 0.42
LINC00339-211ENST00000641009 DACT2Q5SW24 774 aa17.67■□□□□ 0.42
LINC00339-211ENST00000641009 SULF1Q8IWU6 871 aa17.67■□□□□ 0.42
LINC00339-211ENST00000641009 COA1Q9GZY4 146 aa17.67■□□□□ 0.42
LINC00339-211ENST00000641009 CASP8AP2Q9UKL3 1982 aa17.67■□□□□ 0.42
LINC00339-211ENST00000641009 SNAP23O00161 211 aa17.66■□□□□ 0.42
LINC00339-211ENST00000641009 KCNJ4P48050 445 aa17.66■□□□□ 0.42
LINC00339-211ENST00000641009 IFIT5Q13325 482 aaKnown RBP17.66■□□□□ 0.42
LINC00339-211ENST00000641009 ANGEL2Q5VTE6 544 aaKnown RBP17.66■□□□□ 0.42
LINC00339-211ENST00000641009 LMBR1LQ6UX01 489 aa17.66■□□□□ 0.42
LINC00339-211ENST00000641009 BEGAINQ9BUH8 593 aa17.66■□□□□ 0.42
LINC00339-211ENST00000641009 AKAP11Q9UKA4 1901 aa17.66■□□□□ 0.42
LINC00339-211ENST00000641009 ECM29Q5VYK3 1845 aa17.65■□□□□ 0.42
LINC00339-211ENST00000641009 TAF5LO75529 589 aa17.65■□□□□ 0.42
LINC00339-211ENST00000641009 HELBQ8NG08 1087 aaPredicted RBP17.65■□□□□ 0.42
LINC00339-211ENST00000641009 GBA2Q9HCG7 927 aaPredicted RBP17.65■□□□□ 0.42
LINC00339-211ENST00000641009 C9orf78Q9NZ63 289 aaPredicted RBP17.65■□□□□ 0.42
LINC00339-211ENST00000641009 STRIP1Q5VSL9 837 aa17.64■□□□□ 0.41
LINC00339-211ENST00000641009 C2orf69Q8N8R5 385 aa17.64■□□□□ 0.41
LINC00339-211ENST00000641009 CDCA5Q96FF9 252 aa17.64■□□□□ 0.41
LINC00339-211ENST00000641009 ZNF594Q96JF6 807 aaPredicted RBP17.64■□□□□ 0.41
LINC00339-211ENST00000641009 SRCIN1Q9C0H9 1055 aa17.64■□□□□ 0.41
LINC00339-211ENST00000641009 TSKSQ9UJT2 592 aa17.64■□□□□ 0.41
LINC00339-211ENST00000641009 SCAF8Q9UPN6 1271 aaKnown RBP17.64■□□□□ 0.41
LINC00339-211ENST00000641009 ALDH1L1O75891 902 aa17.63■□□□□ 0.41
LINC00339-211ENST00000641009 TTLL5Q6EMB2 1281 aa17.63■□□□□ 0.41
LINC00339-211ENST00000641009 ZIC5Q96T25 663 aa17.63■□□□□ 0.41
LINC00339-211ENST00000641009 MYO3BQ8WXR4 1341 aa17.63■□□□□ 0.41
LINC00339-211ENST00000641009 IRS2Q9Y4H2 1338 aa17.63■□□□□ 0.41
LINC00339-211ENST00000641009 CCDC57Q2TAC2 916 aa17.63■□□□□ 0.41
LINC00339-211ENST00000641009 NBPF9Q3BBW0 867 aa17.63■□□□□ 0.41
LINC00339-211ENST00000641009 PAPPA2Q9BXP8 1791 aa17.62■□□□□ 0.41
LINC00339-211ENST00000641009 PITPNM2Q9BZ72 1349 aa17.62■□□□□ 0.41
LINC00339-211ENST00000641009 BRPF1P55201 1214 aaPredicted RBP17.62■□□□□ 0.41
LINC00339-211ENST00000641009 GTF2IP78347 998 aa17.62■□□□□ 0.41
LINC00339-211ENST00000641009 TAF7LQ5H9L4 462 aa17.62■□□□□ 0.41
LINC00339-211ENST00000641009 RGMBQ6NW40 437 aa17.62■□□□□ 0.41
LINC00339-211ENST00000641009 OGFOD1Q8N543 542 aa17.62■□□□□ 0.41
LINC00339-211ENST00000641009 MRPL50Q8N5N7 158 aaKnown RBP17.62■□□□□ 0.41
LINC00339-211ENST00000641009 SUCLG2Q96I99 432 aa17.62■□□□□ 0.41
LINC00339-211ENST00000641009 CD209Q9NNX6 404 aa17.62■□□□□ 0.41
LINC00339-211ENST00000641009 E9PSI1 815 aa17.61■□□□□ 0.41
LINC00339-211ENST00000641009 NOGQ13253 232 aa17.61■□□□□ 0.41
LINC00339-211ENST00000641009 LDHAL6AQ6ZMR3 332 aa17.61■□□□□ 0.41
LINC00339-211ENST00000641009 KAZALD1Q96I82 304 aa17.61■□□□□ 0.41
LINC00339-211ENST00000641009 FAM155AB1AL88 458 aaPredicted RBP17.6■□□□□ 0.41
LINC00339-211ENST00000641009 WNT10BO00744 389 aa17.6■□□□□ 0.41
LINC00339-211ENST00000641009 PLIN1O60240 522 aa17.6■□□□□ 0.41
LINC00339-211ENST00000641009 SASH1O94885 1247 aa17.6■□□□□ 0.41
LINC00339-211ENST00000641009 NBPF7P0C2Y1 421 aaPredicted RBP17.6■□□□□ 0.41
LINC00339-211ENST00000641009 KIAA0825Q8IV33 1275 aa17.6■□□□□ 0.41
LINC00339-211ENST00000641009 CNNM1Q9NRU3 951 aa17.6■□□□□ 0.41
LINC00339-211ENST00000641009 ZNF157P51786 506 aaPredicted RBP17.59■□□□□ 0.41
LINC00339-211ENST00000641009 SLFN5Q08AF3 891 aa17.59■□□□□ 0.41
LINC00339-211ENST00000641009 C15orf52Q6ZUT6 534 aaKnown RBP17.59■□□□□ 0.41
LINC00339-211ENST00000641009 SSH1Q8WYL5 1049 aa17.59■□□□□ 0.41
LINC00339-211ENST00000641009 CDCA7LQ96GN5 454 aa17.59■□□□□ 0.41
LINC00339-211ENST00000641009 ARAP2Q8WZ64 1704 aa17.58■□□□□ 0.41
LINC00339-211ENST00000641009 PRAMEF18Q5VWM3 479 aa17.58■□□□□ 0.41
LINC00339-211ENST00000641009 UTYO14607 1347 aa17.58■□□□□ 0.4
LINC00339-211ENST00000641009 PTPRCP08575 1304 aa17.58■□□□□ 0.4
LINC00339-211ENST00000641009 CA12O43570 354 aa17.57■□□□□ 0.4
LINC00339-211ENST00000641009 CERS5Q8N5B7 392 aa17.57■□□□□ 0.4
LINC00339-211ENST00000641009 HDAC9Q9UKV0 1011 aa17.57■□□□□ 0.4
LINC00339-211ENST00000641009 IL1R1P14778 569 aa17.56■□□□□ 0.4
LINC00339-211ENST00000641009 MOB2Q70IA6 237 aa17.56■□□□□ 0.4
LINC00339-211ENST00000641009 ZNF804AQ7Z570 1209 aa17.56■□□□□ 0.4
LINC00339-211ENST00000641009 CCDC102AQ96A19 550 aa17.56■□□□□ 0.4
LINC00339-211ENST00000641009 PUS3Q9BZE2 481 aaKnown RBP17.56■□□□□ 0.4
LINC00339-211ENST00000641009 BICC1Q9H694 974 aaKnown RBP17.56■□□□□ 0.4
LINC00339-211ENST00000641009 JAG2Q9Y219 1238 aa17.56■□□□□ 0.4
LINC00339-211ENST00000641009 SLC10A3P09131 477 aa17.56■□□□□ 0.4
LINC00339-211ENST00000641009 MMP14P50281 582 aa17.56■□□□□ 0.4
LINC00339-211ENST00000641009 KIF23Q02241 960 aaPredicted RBP17.56■□□□□ 0.4
LINC00339-211ENST00000641009 MYH13Q9UKX3 1938 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms