RNA–Protein interactions for RNA: ENST00000639856.1

TRIM3-215, Transcript of tripartite motif containing 3, humanhuman

TSL 5 BASIC

Gene TRIM3, Length 2,137 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-215ENST00000639856 ZPR1O75312 459 aa18.03■□□□□ 0.48
TRIM3-215ENST00000639856 TRIM37O94972 964 aa18.03■□□□□ 0.48
TRIM3-215ENST00000639856 SCARF1Q14162 830 aa18.03■□□□□ 0.48
TRIM3-215ENST00000639856 SLFNL1Q499Z3 407 aa18.03■□□□□ 0.48
TRIM3-215ENST00000639856 CCDC152Q4G0S7 254 aa18.03■□□□□ 0.48
TRIM3-215ENST00000639856 FAM196AQ6ZSG2 479 aa18.03■□□□□ 0.48
TRIM3-215ENST00000639856 KBTBD3Q8NAB2 608 aa18.03■□□□□ 0.48
TRIM3-215ENST00000639856 GPT2Q8TD30 523 aa18.03■□□□□ 0.48
TRIM3-215ENST00000639856 ZSCAN31Q96LW9 406 aaPredicted RBP18.03■□□□□ 0.48
TRIM3-215ENST00000639856 LARP6Q9BRS8 491 aaKnown RBP18.03■□□□□ 0.48
TRIM3-215ENST00000639856 TAF1P21675 1872 aa18.03■□□□□ 0.48
TRIM3-215ENST00000639856 COL24A1Q17RW2 1714 aa18.03■□□□□ 0.48
TRIM3-215ENST00000639856 ABCC12Q96J65 1359 aa18.03■□□□□ 0.48
TRIM3-215ENST00000639856 ZNF445P59923 1031 aa18.02■□□□□ 0.48
TRIM3-215ENST00000639856 TTC39AQ5SRH9 613 aa18.02■□□□□ 0.48
TRIM3-215ENST00000639856 SH2B1Q9NRF2 756 aaPredicted RBP18.02■□□□□ 0.48
TRIM3-215ENST00000639856 PDE8BO95263 885 aa18.02■□□□□ 0.47
TRIM3-215ENST00000639856 PSMA5P28066 241 aa18.02■□□□□ 0.47
TRIM3-215ENST00000639856 CCDC158Q5M9N0 1113 aa18.02■□□□□ 0.47
TRIM3-215ENST00000639856 SEC62Q99442 399 aaKnown RBP18.02■□□□□ 0.47
TRIM3-215ENST00000639856 TAF5LO75529 589 aa18.01■□□□□ 0.47
TRIM3-215ENST00000639856 FKBP4Q02790 459 aaKnown RBP eCLIP18.01■□□□□ 0.47
TRIM3-215ENST00000639856 PI16Q6UXB8 463 aa18.01■□□□□ 0.47
TRIM3-215ENST00000639856 TCHHQ07283 1943 aa18.01■□□□□ 0.47
TRIM3-215ENST00000639856 SNAP23O00161 211 aa18.01■□□□□ 0.47
TRIM3-215ENST00000639856 LARGE1O95461 756 aa18.01■□□□□ 0.47
TRIM3-215ENST00000639856 ZSCAN23Q3MJ62 389 aa18.01■□□□□ 0.47
TRIM3-215ENST00000639856 CCDC129Q6ZRS4 1044 aa18.01■□□□□ 0.47
TRIM3-215ENST00000639856 MPHOSPH8Q99549 860 aa18.01■□□□□ 0.47
TRIM3-215ENST00000639856 HMG20BQ9P0W2 317 aa18.01■□□□□ 0.47
TRIM3-215ENST00000639856 SMC3Q9UQE7 1217 aa18.01■□□□□ 0.47
TRIM3-215ENST00000639856 RTL9Q8NET4 1388 aa18■□□□□ 0.47
TRIM3-215ENST00000639856 RGL2O15211 777 aa18■□□□□ 0.47
TRIM3-215ENST00000639856 TSGA10IPQ3SY00 556 aa18■□□□□ 0.47
TRIM3-215ENST00000639856 CCDC24Q8N4L8 307 aa18■□□□□ 0.47
TRIM3-215ENST00000639856 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18■□□□□ 0.47
TRIM3-215ENST00000639856 SETDB2Q96T68 719 aa18■□□□□ 0.47
TRIM3-215ENST00000639856 AKAP11Q9UKA4 1901 aa18■□□□□ 0.47
TRIM3-215ENST00000639856 MROH5Q6ZUA9 1318 aa18■□□□□ 0.47
TRIM3-215ENST00000639856 MBD3O95983 291 aa17.99■□□□□ 0.47
TRIM3-215ENST00000639856 HSP90B1P14625 803 aaKnown RBP17.99■□□□□ 0.47
TRIM3-215ENST00000639856 UBR3Q6ZT12 1888 aa17.99■□□□□ 0.47
TRIM3-215ENST00000639856 GTF2E1P29083 439 aaPredicted RBP17.99■□□□□ 0.47
TRIM3-215ENST00000639856 TRAPPC3LQ5T215 181 aa17.99■□□□□ 0.47
TRIM3-215ENST00000639856 FAM43AQ8N2R8 423 aa17.99■□□□□ 0.47
TRIM3-215ENST00000639856 ARAP2Q8WZ64 1704 aa17.99■□□□□ 0.47
TRIM3-215ENST00000639856 SYT1P21579 422 aa17.98■□□□□ 0.47
TRIM3-215ENST00000639856 RFC4P35249 363 aa17.98■□□□□ 0.47
TRIM3-215ENST00000639856 PUM3Q15397 648 aaKnown RBP17.98■□□□□ 0.47
TRIM3-215ENST00000639856 BLOC1S2Q6QNY1 142 aa17.98■□□□□ 0.47
TRIM3-215ENST00000639856 NBPF5PQ86XG9 351 aaPredicted RBP17.98■□□□□ 0.47
TRIM3-215ENST00000639856 CCDC83Q8IWF9 413 aa17.98■□□□□ 0.47
TRIM3-215ENST00000639856 STX6O43752 255 aa17.98■□□□□ 0.47
TRIM3-215ENST00000639856 ZSCAN22P10073 491 aaPredicted RBP17.98■□□□□ 0.47
TRIM3-215ENST00000639856 FGFR2P21802 821 aa17.98■□□□□ 0.47
TRIM3-215ENST00000639856 IGHMBP2P38935 993 aaKnown RBP17.98■□□□□ 0.47
TRIM3-215ENST00000639856 MCAMP43121 646 aa17.98■□□□□ 0.47
TRIM3-215ENST00000639856 ZAP70P43403 619 aa17.98■□□□□ 0.47
TRIM3-215ENST00000639856 RBM6P78332 1123 aaKnown RBP17.98■□□□□ 0.47
TRIM3-215ENST00000639856 ME3Q16798 604 aa17.98■□□□□ 0.47
TRIM3-215ENST00000639856 TICAM2Q86XR7 235 aa17.98■□□□□ 0.47
TRIM3-215ENST00000639856 ALDH8A1Q9H2A2 487 aaPredicted RBP17.98■□□□□ 0.47
TRIM3-215ENST00000639856 PHKA1P46020 1223 aa17.97■□□□□ 0.47
TRIM3-215ENST00000639856 MCMDC2Q4G0Z9 681 aa17.97■□□□□ 0.47
TRIM3-215ENST00000639856 ZNF772Q68DY9 489 aaPredicted RBP17.97■□□□□ 0.47
TRIM3-215ENST00000639856 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.96■□□□□ 0.47
TRIM3-215ENST00000639856 RPS6KB1P23443 525 aa17.96■□□□□ 0.47
TRIM3-215ENST00000639856 ANKRD1Q15327 319 aa17.96■□□□□ 0.47
TRIM3-215ENST00000639856 SF3B3Q15393 1217 aaKnown RBP17.96■□□□□ 0.47
TRIM3-215ENST00000639856 NSFL1CQ9UNZ2 370 aaKnown RBP17.96■□□□□ 0.47
TRIM3-215ENST00000639856 TAF6LQ9Y6J9 622 aa17.96■□□□□ 0.47
TRIM3-215ENST00000639856 GJB2P29033 226 aa17.96■□□□□ 0.47
TRIM3-215ENST00000639856 COL9A3Q14050 684 aaPredicted RBP17.96■□□□□ 0.47
TRIM3-215ENST00000639856 KRT32Q14532 448 aa17.96■□□□□ 0.47
TRIM3-215ENST00000639856 SLC10A5Q5PT55 438 aa17.96■□□□□ 0.47
TRIM3-215ENST00000639856 CCDC102BQ68D86 513 aa17.96■□□□□ 0.47
TRIM3-215ENST00000639856 LPIN2Q92539 896 aa17.96■□□□□ 0.47
TRIM3-215ENST00000639856 TMEM63CQ9P1W3 806 aa17.96■□□□□ 0.47
TRIM3-215ENST00000639856 RBM27Q9P2N5 1060 aaKnown RBP17.96■□□□□ 0.47
TRIM3-215ENST00000639856 TPCN1Q9ULQ1 816 aa17.96■□□□□ 0.47
TRIM3-215ENST00000639856 MYO5AQ9Y4I1 1855 aaKnown RBP17.96■□□□□ 0.47
TRIM3-215ENST00000639856 ST3GAL1Q11201 340 aa17.95■□□□□ 0.46
TRIM3-215ENST00000639856 NYXQ9GZU5 481 aa17.95■□□□□ 0.46
TRIM3-215ENST00000639856 U3KPZ7 1027 aaPredicted RBP17.95■□□□□ 0.46
TRIM3-215ENST00000639856 A0A1B0GUL6 1792 aa17.95■□□□□ 0.46
TRIM3-215ENST00000639856 MYH7P12883 1935 aa17.95■□□□□ 0.46
TRIM3-215ENST00000639856 RNF113AO15541 343 aaKnown RBP17.95■□□□□ 0.46
TRIM3-215ENST00000639856 CHRNDQ07001 517 aa17.95■□□□□ 0.46
TRIM3-215ENST00000639856 ZMYM1Q5SVZ6 1142 aa17.95■□□□□ 0.46
TRIM3-215ENST00000639856 CDC5LQ99459 802 aaKnown RBP17.95■□□□□ 0.46
TRIM3-215ENST00000639856 TNRC6CQ9HCJ0 1690 aaKnown RBP17.94■□□□□ 0.46
TRIM3-215ENST00000639856 FOXD4L6Q3SYB3 417 aaPredicted RBP17.94■□□□□ 0.46
TRIM3-215ENST00000639856 FOXD4L3Q6VB84 417 aaPredicted RBP17.94■□□□□ 0.46
TRIM3-215ENST00000639856 PROM2Q8N271 834 aa17.94■□□□□ 0.46
TRIM3-215ENST00000639856 F13A1P00488 732 aa17.93■□□□□ 0.46
TRIM3-215ENST00000639856 SLC5A1P13866 664 aa17.93■□□□□ 0.46
TRIM3-215ENST00000639856 NASPP49321 788 aaPredicted RBP17.93■□□□□ 0.46
TRIM3-215ENST00000639856 NFIXQ14938 502 aa17.93■□□□□ 0.46
TRIM3-215ENST00000639856 SLC27A3Q5K4L6 730 aa17.93■□□□□ 0.46
TRIM3-215ENST00000639856 ANKRD18AQ8IVF6 992 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms