RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 TMEM94Q12767 1356 aa23.58■■□□□ 1.37
SYNGAP1-227ENST00000638142 SMTNL1A8MU46 457 aa23.58■■□□□ 1.37
SYNGAP1-227ENST00000638142 CYP27B1O15528 508 aa23.58■■□□□ 1.37
SYNGAP1-227ENST00000638142 NEMFO60524 1076 aa23.58■■□□□ 1.37
SYNGAP1-227ENST00000638142 CACTINQ8WUQ7 758 aaKnown RBP23.58■■□□□ 1.37
SYNGAP1-227ENST00000638142 ZNF274Q96GC6 653 aaPredicted RBP23.58■■□□□ 1.37
SYNGAP1-227ENST00000638142 NEUROD6Q96NK8 337 aa23.58■■□□□ 1.37
SYNGAP1-227ENST00000638142 E7EWF7 191 aa23.57■■□□□ 1.36
SYNGAP1-227ENST00000638142 KINO60870 393 aaKnown RBP23.57■■□□□ 1.36
SYNGAP1-227ENST00000638142 IL15P40933 162 aaPredicted RBP23.57■■□□□ 1.36
SYNGAP1-227ENST00000638142 C11orf57Q6ZUT1 292 aaPredicted RBP23.57■■□□□ 1.36
SYNGAP1-227ENST00000638142 USP28Q96RU2 1077 aa23.57■■□□□ 1.36
SYNGAP1-227ENST00000638142 HSPD1P10809 573 aaKnown RBP23.57■■□□□ 1.36
SYNGAP1-227ENST00000638142 FAM160A1Q05DH4 1040 aa23.57■■□□□ 1.36
SYNGAP1-227ENST00000638142 SNW1Q13573 536 aaKnown RBP23.57■■□□□ 1.36
SYNGAP1-227ENST00000638142 SYCP1Q15431 976 aa23.57■■□□□ 1.36
SYNGAP1-227ENST00000638142 C16orf45Q96MC5 204 aaPredicted RBP23.57■■□□□ 1.36
SYNGAP1-227ENST00000638142 GOLPH3LQ9H4A5 285 aa23.57■■□□□ 1.36
SYNGAP1-227ENST00000638142 GLI3P10071 1580 aa23.57■■□□□ 1.36
SYNGAP1-227ENST00000638142 ATP2B3Q16720 1220 aa23.56■■□□□ 1.36
SYNGAP1-227ENST00000638142 ENGASEQ8NFI3 743 aa23.56■■□□□ 1.36
SYNGAP1-227ENST00000638142 PKD1L3Q7Z443 1732 aa23.56■■□□□ 1.36
SYNGAP1-227ENST00000638142 CCDC144BQ3MJ40 725 aa23.56■■□□□ 1.36
SYNGAP1-227ENST00000638142 CCDC144CPQ8IYA2 1237 aa23.56■■□□□ 1.36
SYNGAP1-227ENST00000638142 ANO10Q9NW15 660 aa23.56■■□□□ 1.36
SYNGAP1-227ENST00000638142 PAXBP1Q9Y5B6 917 aa23.56■■□□□ 1.36
SYNGAP1-227ENST00000638142 COL18A1P39060 1754 aa23.56■■□□□ 1.36
SYNGAP1-227ENST00000638142 SPEF2Q9C093 1822 aa23.56■■□□□ 1.36
SYNGAP1-227ENST00000638142 CSB-PGBD3P0DP91 1061 aa23.55■■□□□ 1.36
SYNGAP1-227ENST00000638142 TNNT1P13805 278 aa23.55■■□□□ 1.36
SYNGAP1-227ENST00000638142 CABP4P57796 275 aa23.55■■□□□ 1.36
SYNGAP1-227ENST00000638142 CCT2P78371 535 aaKnown RBP23.55■■□□□ 1.36
SYNGAP1-227ENST00000638142 FBXL16Q8N461 479 aa23.55■■□□□ 1.36
SYNGAP1-227ENST00000638142 FTOQ9C0B1 505 aaKnown RBP eCLIP23.55■■□□□ 1.36
SYNGAP1-227ENST00000638142 PDIA3P30101 505 aaKnown RBP23.55■■□□□ 1.36
SYNGAP1-227ENST00000638142 CBX1P83916 185 aa23.55■■□□□ 1.36
SYNGAP1-227ENST00000638142 GTPBP4Q9BZE4 634 aaKnown RBP23.55■■□□□ 1.36
SYNGAP1-227ENST00000638142 CCDC9Q9Y3X0 531 aaKnown RBP23.55■■□□□ 1.36
SYNGAP1-227ENST00000638142 RNF113AO15541 343 aaKnown RBP23.54■■□□□ 1.36
SYNGAP1-227ENST00000638142 CWC25Q9NXE8 425 aaPredicted RBP23.54■■□□□ 1.36
SYNGAP1-227ENST00000638142 MAST3O60307 1309 aa23.54■■□□□ 1.36
SYNGAP1-227ENST00000638142 BECN2A8MW95 431 aa23.54■■□□□ 1.36
SYNGAP1-227ENST00000638142 FOSBP53539 338 aa23.54■■□□□ 1.36
SYNGAP1-227ENST00000638142 LRRC8AQ8IWT6 810 aa23.54■■□□□ 1.36
SYNGAP1-227ENST00000638142 TIMM10P62072 90 aa23.53■■□□□ 1.36
SYNGAP1-227ENST00000638142 PROSER2Q86WR7 435 aaPredicted RBP23.53■■□□□ 1.36
SYNGAP1-227ENST00000638142 NCOA5Q9HCD5 579 aaKnown RBP23.53■■□□□ 1.36
SYNGAP1-227ENST00000638142 SLFNL1Q499Z3 407 aa23.53■■□□□ 1.36
SYNGAP1-227ENST00000638142 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.53■■□□□ 1.36
SYNGAP1-227ENST00000638142 C19orf44Q9H6X5 657 aa23.53■■□□□ 1.36
SYNGAP1-227ENST00000638142 CARMIL3Q8ND23 1372 aa23.53■■□□□ 1.36
SYNGAP1-227ENST00000638142 IFIT1P09914 478 aaKnown RBP23.52■■□□□ 1.36
SYNGAP1-227ENST00000638142 ME1P48163 572 aa23.52■■□□□ 1.36
SYNGAP1-227ENST00000638142 EVCP57679 992 aa23.52■■□□□ 1.36
SYNGAP1-227ENST00000638142 RBM6P78332 1123 aaKnown RBP23.52■■□□□ 1.36
SYNGAP1-227ENST00000638142 TPD52L1Q16890 204 aaPredicted RBP23.52■■□□□ 1.36
SYNGAP1-227ENST00000638142 FSIP1Q8NA03 581 aa23.52■■□□□ 1.36
SYNGAP1-227ENST00000638142 EYA2O00167 538 aa23.52■■□□□ 1.36
SYNGAP1-227ENST00000638142 ILDR1Q86SU0 546 aaPredicted RBP23.52■■□□□ 1.36
SYNGAP1-227ENST00000638142 CEP57L1Q8IYX8 460 aa23.52■■□□□ 1.36
SYNGAP1-227ENST00000638142 ATG3Q9NT62 314 aa23.52■■□□□ 1.36
SYNGAP1-227ENST00000638142 PARP4Q9UKK3 1724 aaKnown RBP23.52■■□□□ 1.36
SYNGAP1-227ENST00000638142 CIAO1O76071 339 aa23.51■■□□□ 1.35
SYNGAP1-227ENST00000638142 DHX40Q8IX18 779 aaKnown RBP23.51■■□□□ 1.35
SYNGAP1-227ENST00000638142 NAP1L2Q9ULW6 460 aaPredicted RBP23.51■■□□□ 1.35
SYNGAP1-227ENST00000638142 NBPF26B4DH59 902 aa23.51■■□□□ 1.35
SYNGAP1-227ENST00000638142 NBPF14Q5TI25 921 aa23.51■■□□□ 1.35
SYNGAP1-227ENST00000638142 NBPF10Q6P3W6 841 aaKnown RBP23.51■■□□□ 1.35
SYNGAP1-227ENST00000638142 NBPF15Q8N660 670 aa23.51■■□□□ 1.35
SYNGAP1-227ENST00000638142 NAT10Q9H0A0 1025 aaKnown RBP23.51■■□□□ 1.35
SYNGAP1-227ENST00000638142 RTEL1Q9NZ71 1219 aa23.51■■□□□ 1.35
SYNGAP1-227ENST00000638142 LRRFIP1Q32MZ4 808 aaKnown RBP23.5■■□□□ 1.35
SYNGAP1-227ENST00000638142 MRPS27Q92552 414 aaKnown RBP23.5■■□□□ 1.35
SYNGAP1-227ENST00000638142 TJP1Q07157 1748 aa23.5■■□□□ 1.35
SYNGAP1-227ENST00000638142 ADAMTSL3P82987 1691 aa23.5■■□□□ 1.35
SYNGAP1-227ENST00000638142 NUP188Q5SRE5 1749 aa23.5■■□□□ 1.35
SYNGAP1-227ENST00000638142 NCBP1Q09161 790 aaKnown RBP23.5■■□□□ 1.35
SYNGAP1-227ENST00000638142 A0A0G2JLW4 131 aa23.49■■□□□ 1.35
SYNGAP1-227ENST00000638142 A0A1B0GUL7 405 aa23.49■■□□□ 1.35
SYNGAP1-227ENST00000638142 A0A1W2PQ27 194 aa23.49■■□□□ 1.35
SYNGAP1-227ENST00000638142 A0A1W2PQ64 194 aa23.49■■□□□ 1.35
SYNGAP1-227ENST00000638142 A0A1W2PQD8 194 aa23.49■■□□□ 1.35
SYNGAP1-227ENST00000638142 ADALQ6DHV7 355 aa23.49■■□□□ 1.35
SYNGAP1-227ENST00000638142 CCDC112Q8NEF3 446 aa23.49■■□□□ 1.35
SYNGAP1-227ENST00000638142 FMR1NBQ8N0W7 255 aaPredicted RBP23.49■■□□□ 1.35
SYNGAP1-227ENST00000638142 CCDC191Q8NCU4 936 aa23.49■■□□□ 1.35
SYNGAP1-227ENST00000638142 FEZ1Q99689 392 aa23.49■■□□□ 1.35
SYNGAP1-227ENST00000638142 CTNNA3Q9UI47 895 aa23.49■■□□□ 1.35
SYNGAP1-227ENST00000638142 FDPSP14324 419 aaKnown RBP23.48■■□□□ 1.35
SYNGAP1-227ENST00000638142 GUCY1B3Q02153 619 aa23.48■■□□□ 1.35
SYNGAP1-227ENST00000638142 LRRC24Q50LG9 513 aa23.48■■□□□ 1.35
SYNGAP1-227ENST00000638142 PCDHA7Q9UN72 937 aa23.48■■□□□ 1.35
SYNGAP1-227ENST00000638142 M0R2C6 588 aa23.48■■□□□ 1.35
SYNGAP1-227ENST00000638142 CEP135Q66GS9 1140 aa23.47■■□□□ 1.35
SYNGAP1-227ENST00000638142 TTLL7Q6ZT98 887 aa23.47■■□□□ 1.35
SYNGAP1-227ENST00000638142 CHST3Q7LGC8 479 aa23.47■■□□□ 1.35
SYNGAP1-227ENST00000638142 SKILP12757 684 aa23.46■■□□□ 1.35
SYNGAP1-227ENST00000638142 OSBP2Q969R2 916 aa23.46■■□□□ 1.35
SYNGAP1-227ENST00000638142 DHX16O60231 1041 aaKnown RBP23.45■■□□□ 1.35
SYNGAP1-227ENST00000638142 ZFYP08048 801 aaPredicted RBP23.45■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms