RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 REM2Q8IYK8 340 aaPredicted RBP24.97■■□□□ 1.59
CLN3-262ENST00000637699 FBXW7Q969H0 707 aa24.97■■□□□ 1.59
CLN3-262ENST00000637699 CHMP4AQ9BY43 222 aa24.97■■□□□ 1.59
CLN3-262ENST00000637699 GREM2Q9H772 168 aa24.97■■□□□ 1.59
CLN3-262ENST00000637699 MINPP1Q9UNW1 487 aa24.97■■□□□ 1.59
CLN3-262ENST00000637699 UBE2Q2LH0YL09 131 aa24.96■■□□□ 1.59
CLN3-262ENST00000637699 BSDC1Q9NW68 430 aaPredicted RBP24.96■■□□□ 1.59
CLN3-262ENST00000637699 CTU1Q7Z7A3 348 aaKnown RBP24.95■■□□□ 1.58
CLN3-262ENST00000637699 PAPPA2Q9BXP8 1791 aa24.95■■□□□ 1.58
CLN3-262ENST00000637699 MED23Q9ULK4 1368 aa24.94■■□□□ 1.58
CLN3-262ENST00000637699 CCT4P50991 539 aaKnown RBP24.94■■□□□ 1.58
CLN3-262ENST00000637699 NEXNQ0ZGT2 675 aa24.94■■□□□ 1.58
CLN3-262ENST00000637699 TTLL12Q14166 644 aaPredicted RBP24.94■■□□□ 1.58
CLN3-262ENST00000637699 CWF19L2Q2TBE0 894 aaKnown RBP24.94■■□□□ 1.58
CLN3-262ENST00000637699 DACT2Q5SW24 774 aa24.94■■□□□ 1.58
CLN3-262ENST00000637699 OGFOD1Q8N543 542 aa24.94■■□□□ 1.58
CLN3-262ENST00000637699 TSR2Q969E8 191 aaKnown RBP24.93■■□□□ 1.58
CLN3-262ENST00000637699 SPEF2Q9C093 1822 aa24.92■■□□□ 1.58
CLN3-262ENST00000637699 STK31Q9BXU1 1019 aa24.92■■□□□ 1.58
CLN3-262ENST00000637699 NEURL1BA8MQ27 555 aa24.91■■□□□ 1.58
CLN3-262ENST00000637699 WNT10BO00744 389 aa24.91■■□□□ 1.58
CLN3-262ENST00000637699 UBE3BQ7Z3V4 1068 aa24.91■■□□□ 1.58
CLN3-262ENST00000637699 TXNRD3Q86VQ6 643 aa24.91■■□□□ 1.58
CLN3-262ENST00000637699 TBC1D8O95759 1140 aa24.9■■□□□ 1.58
CLN3-262ENST00000637699 STRIP1Q5VSL9 837 aa24.9■■□□□ 1.58
CLN3-262ENST00000637699 COA1Q9GZY4 146 aa24.9■■□□□ 1.58
CLN3-262ENST00000637699 PDE4DIPQ5VU43 2346 aa24.89■■□□□ 1.58
CLN3-262ENST00000637699 MYH3P11055 1940 aa24.89■■□□□ 1.58
CLN3-262ENST00000637699 SASH1O94885 1247 aa24.89■■□□□ 1.58
CLN3-262ENST00000637699 IGHMBP2P38935 993 aaKnown RBP24.89■■□□□ 1.58
CLN3-262ENST00000637699 MKRN3Q13064 507 aaKnown RBP24.89■■□□□ 1.58
CLN3-262ENST00000637699 G2E3Q7L622 706 aa24.89■■□□□ 1.58
CLN3-262ENST00000637699 LEMD3Q9Y2U8 911 aa24.89■■□□□ 1.58
CLN3-262ENST00000637699 MYO3BQ8WXR4 1341 aa24.88■■□□□ 1.57
CLN3-262ENST00000637699 H7C1W4 665 aa24.88■■□□□ 1.57
CLN3-262ENST00000637699 NF2P35240 595 aa24.88■■□□□ 1.57
CLN3-262ENST00000637699 HDAC9Q9UKV0 1011 aa24.88■■□□□ 1.57
CLN3-262ENST00000637699 TTLL5Q6EMB2 1281 aa24.87■■□□□ 1.57
CLN3-262ENST00000637699 ZNF296Q8WUU4 475 aaPredicted RBP24.87■■□□□ 1.57
CLN3-262ENST00000637699 ZNF804BA4D1E1 1349 aa24.86■■□□□ 1.57
CLN3-262ENST00000637699 SLC4A2P04920 1241 aa24.86■■□□□ 1.57
CLN3-262ENST00000637699 KLRK1P26718 216 aa24.86■■□□□ 1.57
CLN3-262ENST00000637699 PRKG1Q13976 671 aa24.86■■□□□ 1.57
CLN3-262ENST00000637699 HPS5Q9UPZ3 1129 aa24.86■■□□□ 1.57
CLN3-262ENST00000637699 ITGA6P23229 1130 aa24.85■■□□□ 1.57
CLN3-262ENST00000637699 TWISTNBQ3B726 338 aaPredicted RBP24.85■■□□□ 1.57
CLN3-262ENST00000637699 KIAA0825Q8IV33 1275 aa24.85■■□□□ 1.57
CLN3-262ENST00000637699 ANKRD2Q9GZV1 360 aa24.85■■□□□ 1.57
CLN3-262ENST00000637699 ZNF646O15015 1829 aaPredicted RBP24.84■■□□□ 1.57
CLN3-262ENST00000637699 TM4SF4P48230 202 aa24.84■■□□□ 1.57
CLN3-262ENST00000637699 GTF2IP78347 998 aa24.84■■□□□ 1.57
CLN3-262ENST00000637699 MPHOSPH8Q99549 860 aa24.84■■□□□ 1.57
CLN3-262ENST00000637699 PTPN12Q05209 780 aaKnown RBP24.83■■□□□ 1.57
CLN3-262ENST00000637699 GCKRQ14397 625 aa24.83■■□□□ 1.57
CLN3-262ENST00000637699 KCNJ4P48050 445 aa24.82■■□□□ 1.56
CLN3-262ENST00000637699 MMP14P50281 582 aa24.82■■□□□ 1.56
CLN3-262ENST00000637699 PKN2Q16513 984 aaKnown RBP24.82■■□□□ 1.56
CLN3-262ENST00000637699 ARMC9Q7Z3E5 817 aa24.82■■□□□ 1.56
CLN3-262ENST00000637699 APOBEC3FQ8IUX4 373 aaKnown RBP24.82■■□□□ 1.56
CLN3-262ENST00000637699 PLA2G12BQ9BX93 195 aa24.82■■□□□ 1.56
CLN3-262ENST00000637699 GPR25O00155 361 aa24.81■■□□□ 1.56
CLN3-262ENST00000637699 CSF1RP07333 972 aa24.8■■□□□ 1.56
CLN3-262ENST00000637699 CASP7P55210 303 aa24.8■■□□□ 1.56
CLN3-262ENST00000637699 CHRNDQ07001 517 aa24.8■■□□□ 1.56
CLN3-262ENST00000637699 SREBF2Q12772 1141 aa24.8■■□□□ 1.56
CLN3-262ENST00000637699 FLIIQ13045 1269 aa24.8■■□□□ 1.56
CLN3-262ENST00000637699 WWC1Q8IX03 1113 aa24.8■■□□□ 1.56
CLN3-262ENST00000637699 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.8■■□□□ 1.56
CLN3-262ENST00000637699 ANGEL1Q9UNK9 670 aaKnown RBP24.8■■□□□ 1.56
CLN3-262ENST00000637699 FZD1Q9UP38 647 aa24.8■■□□□ 1.56
CLN3-262ENST00000637699 FKBP5Q13451 457 aaPredicted RBP24.79■■□□□ 1.56
CLN3-262ENST00000637699 CCDC184Q52MB2 194 aa24.79■■□□□ 1.56
CLN3-262ENST00000637699 ZBED3Q96IU2 234 aaPredicted RBP24.79■■□□□ 1.56
CLN3-262ENST00000637699 MYH16Q9H6N6 1097 aa24.79■■□□□ 1.56
CLN3-262ENST00000637699 SNAP23O00161 211 aa24.78■■□□□ 1.56
CLN3-262ENST00000637699 CCDC27Q2M243 656 aa24.78■■□□□ 1.56
CLN3-262ENST00000637699 DNAAF4Q8WXU2 420 aa24.78■■□□□ 1.56
CLN3-262ENST00000637699 R3HDMLQ9H3Y0 253 aa24.78■■□□□ 1.56
CLN3-262ENST00000637699 CD209Q9NNX6 404 aa24.78■■□□□ 1.56
CLN3-262ENST00000637699 DLGAP5Q15398 846 aa24.77■■□□□ 1.56
CLN3-262ENST00000637699 LDLRAD1Q5T700 205 aa24.77■■□□□ 1.56
CLN3-262ENST00000637699 SPRYD7Q5W111 196 aa24.77■■□□□ 1.56
CLN3-262ENST00000637699 HELBQ8NG08 1087 aaPredicted RBP24.77■■□□□ 1.56
CLN3-262ENST00000637699 LINS1Q8NG48 757 aa24.77■■□□□ 1.56
CLN3-262ENST00000637699 ANKRD18BA2A2Z9 1011 aa24.76■■□□□ 1.55
CLN3-262ENST00000637699 TAF5LO75529 589 aa24.76■■□□□ 1.55
CLN3-262ENST00000637699 NOM1Q5C9Z4 860 aaKnown RBP24.76■■□□□ 1.55
CLN3-262ENST00000637699 DEFB129Q9H1M3 183 aa24.76■■□□□ 1.55
CLN3-262ENST00000637699 FKTNO75072 461 aa24.75■■□□□ 1.55
CLN3-262ENST00000637699 CERS5Q8N5B7 392 aa24.75■■□□□ 1.55
CLN3-262ENST00000637699 F8W031 263 aaPredicted RBP24.74■■□□□ 1.55
CLN3-262ENST00000637699 FBXO46Q6PJ61 603 aaPredicted RBP24.74■■□□□ 1.55
CLN3-262ENST00000637699 SLC10A4Q96EP9 437 aa24.74■■□□□ 1.55
CLN3-262ENST00000637699 PCDHAC2Q9Y5I4 1007 aa24.74■■□□□ 1.55
CLN3-262ENST00000637699 IL16Q14005 1332 aa24.73■■□□□ 1.55
CLN3-262ENST00000637699 CHMP3Q9Y3E7 222 aa24.73■■□□□ 1.55
CLN3-262ENST00000637699 IRS2Q9Y4H2 1338 aa24.72■■□□□ 1.55
CLN3-262ENST00000637699 IFIT5Q13325 482 aaKnown RBP24.72■■□□□ 1.55
CLN3-262ENST00000637699 PRPF38BQ5VTL8 546 aaKnown RBP24.72■■□□□ 1.55
CLN3-262ENST00000637699 CFHR5Q9BXR6 569 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms