RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 NPR1P16066 1061 aa22.31■■□□□ 1.16
CLN3-254ENST00000637050 CWC27Q6UX04 472 aaKnown RBP22.31■■□□□ 1.16
CLN3-254ENST00000637050 COL11A2P13942 1736 aaPredicted RBP22.31■■□□□ 1.16
CLN3-254ENST00000637050 ZAP70P43403 619 aa22.3■■□□□ 1.16
CLN3-254ENST00000637050 FKBP4Q02790 459 aaKnown RBP eCLIP22.3■■□□□ 1.16
CLN3-254ENST00000637050 TMC4Q7Z404 712 aa22.3■■□□□ 1.16
CLN3-254ENST00000637050 SNRKQ9NRH2 765 aa22.3■■□□□ 1.16
CLN3-254ENST00000637050 ZNF804BA4D1E1 1349 aa22.3■■□□□ 1.16
CLN3-254ENST00000637050 BCAMP50895 628 aa22.3■■□□□ 1.16
CLN3-254ENST00000637050 ANTXR1Q9H6X2 564 aa22.3■■□□□ 1.16
CLN3-254ENST00000637050 KCNJ4P48050 445 aa22.29■■□□□ 1.16
CLN3-254ENST00000637050 NMIQ13287 307 aaPredicted RBP22.29■■□□□ 1.16
CLN3-254ENST00000637050 PI16Q6UXB8 463 aa22.29■■□□□ 1.16
CLN3-254ENST00000637050 LRRC37AA6NMS7 1700 aa22.29■■□□□ 1.16
CLN3-254ENST00000637050 XDHP47989 1333 aa22.28■■□□□ 1.16
CLN3-254ENST00000637050 RAD50Q92878 1312 aa22.28■■□□□ 1.16
CLN3-254ENST00000637050 EPB41L2O43491 1005 aaKnown RBP22.28■■□□□ 1.16
CLN3-254ENST00000637050 MASTLQ96GX5 879 aa22.28■■□□□ 1.16
CLN3-254ENST00000637050 LEMD3Q9Y2U8 911 aa22.28■■□□□ 1.16
CLN3-254ENST00000637050 ALDH1B1P30837 517 aa22.27■■□□□ 1.16
CLN3-254ENST00000637050 SLC51AQ86UW1 340 aa22.27■■□□□ 1.16
CLN3-254ENST00000637050 FAM227BQ96M60 508 aa22.27■■□□□ 1.16
CLN3-254ENST00000637050 HMG20BQ9P0W2 317 aa22.27■■□□□ 1.16
CLN3-254ENST00000637050 IRS2Q9Y4H2 1338 aa22.27■■□□□ 1.16
CLN3-254ENST00000637050 GYG1P46976 350 aa22.26■■□□□ 1.15
CLN3-254ENST00000637050 RASGRF1Q13972 1273 aa22.26■■□□□ 1.15
CLN3-254ENST00000637050 CAVIN4Q5BKX8 364 aa22.26■■□□□ 1.15
CLN3-254ENST00000637050 FAM84BQ96KN1 310 aaPredicted RBP22.26■■□□□ 1.15
CLN3-254ENST00000637050 ANO2Q9NQ90 1003 aa22.26■■□□□ 1.15
CLN3-254ENST00000637050 ANKIB1Q9P2G1 1089 aa22.26■■□□□ 1.15
CLN3-254ENST00000637050 A0A0D9SFI3 127 aa22.26■■□□□ 1.15
CLN3-254ENST00000637050 PPEF1O14829 653 aaPredicted RBP22.26■■□□□ 1.15
CLN3-254ENST00000637050 CYP2E1P05181 493 aaPredicted RBP22.26■■□□□ 1.15
CLN3-254ENST00000637050 TTF1Q15361 905 aaPredicted RBP22.26■■□□□ 1.15
CLN3-254ENST00000637050 FBXO33Q7Z6M2 555 aa22.26■■□□□ 1.15
CLN3-254ENST00000637050 SP8Q8IXZ3 490 aa22.26■■□□□ 1.15
CLN3-254ENST00000637050 SPATA5Q8NB90 893 aa22.26■■□□□ 1.15
CLN3-254ENST00000637050 GPSM2P81274 684 aa22.25■■□□□ 1.15
CLN3-254ENST00000637050 C2CD5Q86YS7 1000 aa22.25■■□□□ 1.15
CLN3-254ENST00000637050 GNL3LQ9NVN8 582 aaKnown RBP22.25■■□□□ 1.15
CLN3-254ENST00000637050 PODXL2Q9NZ53 605 aa22.25■■□□□ 1.15
CLN3-254ENST00000637050 ATP6V0A2Q9Y487 856 aa22.25■■□□□ 1.15
CLN3-254ENST00000637050 C10orf71Q711Q0 1435 aa22.24■■□□□ 1.15
CLN3-254ENST00000637050 H0YIN7 160 aa22.24■■□□□ 1.15
CLN3-254ENST00000637050 KLRK1P26718 216 aa22.24■■□□□ 1.15
CLN3-254ENST00000637050 STYK1Q6J9G0 422 aa22.24■■□□□ 1.15
CLN3-254ENST00000637050 LSG1Q9H089 658 aaKnown RBP22.24■■□□□ 1.15
CLN3-254ENST00000637050 ZBTB22O15209 634 aa22.23■■□□□ 1.15
CLN3-254ENST00000637050 LRRFIP1Q32MZ4 808 aaKnown RBP22.23■■□□□ 1.15
CLN3-254ENST00000637050 C15orf52Q6ZUT6 534 aaKnown RBP22.23■■□□□ 1.15
CLN3-254ENST00000637050 MED23Q9ULK4 1368 aa22.23■■□□□ 1.15
CLN3-254ENST00000637050 LTBP1Q14766 1721 aa22.23■■□□□ 1.15
CLN3-254ENST00000637050 RNF113AO15541 343 aaKnown RBP22.23■■□□□ 1.15
CLN3-254ENST00000637050 CHGBP05060 677 aa22.23■■□□□ 1.15
CLN3-254ENST00000637050 ATP2B4P23634 1241 aa22.23■■□□□ 1.15
CLN3-254ENST00000637050 KIF2CQ99661 725 aa22.23■■□□□ 1.15
CLN3-254ENST00000637050 PIH1D3Q9NQM4 214 aaKnown RBP22.23■■□□□ 1.15
CLN3-254ENST00000637050 NSFL1CQ9UNZ2 370 aaKnown RBP22.23■■□□□ 1.15
CLN3-254ENST00000637050 ZFYP08048 801 aaPredicted RBP22.22■■□□□ 1.15
CLN3-254ENST00000637050 HIBADHP31937 336 aaKnown RBP22.22■■□□□ 1.15
CLN3-254ENST00000637050 ZMYM1Q5SVZ6 1142 aa22.22■■□□□ 1.15
CLN3-254ENST00000637050 KIAA1211Q6ZU35 1233 aa22.22■■□□□ 1.15
CLN3-254ENST00000637050 VPS37DQ86XT2 251 aa22.22■■□□□ 1.15
CLN3-254ENST00000637050 SEMA3EO15041 775 aa22.21■■□□□ 1.15
CLN3-254ENST00000637050 TXNRD3Q86VQ6 643 aa22.21■■□□□ 1.15
CLN3-254ENST00000637050 DDRGK1Q96HY6 314 aa22.21■■□□□ 1.15
CLN3-254ENST00000637050 IPO9Q96P70 1041 aaKnown RBP22.21■■□□□ 1.15
CLN3-254ENST00000637050 HELLSQ9NRZ9 838 aa22.21■■□□□ 1.15
CLN3-254ENST00000637050 GGA1Q9UJY5 639 aa22.21■■□□□ 1.15
CLN3-254ENST00000637050 MCMDC2Q4G0Z9 681 aa22.2■■□□□ 1.15
CLN3-254ENST00000637050 ZNF622Q969S3 477 aaKnown RBP eCLIP22.2■■□□□ 1.15
CLN3-254ENST00000637050 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.2■■□□□ 1.153e-6■■■■■ 36.1
CLN3-254ENST00000637050 MTFR1LQ9H019 292 aa22.2■■□□□ 1.15
CLN3-254ENST00000637050 COL1A1P02452 1464 aaPredicted RBP22.2■■□□□ 1.14
CLN3-254ENST00000637050 DOCK2Q92608 1830 aa22.2■■□□□ 1.14
CLN3-254ENST00000637050 UFL1O94874 794 aa22.2■■□□□ 1.14
CLN3-254ENST00000637050 CHRNA5P30532 468 aa22.2■■□□□ 1.14
CLN3-254ENST00000637050 R3HDM1Q15032 1099 aaKnown RBP22.2■■□□□ 1.14
CLN3-254ENST00000637050 ZNF589Q86UQ0 364 aaPredicted RBP22.2■■□□□ 1.14
CLN3-254ENST00000637050 DENND2AQ9ULE3 1009 aa22.2■■□□□ 1.14
CLN3-254ENST00000637050 PDS5AQ29RF7 1337 aaKnown RBP22.19■■□□□ 1.14
CLN3-254ENST00000637050 ZBTB7AO95365 584 aa22.19■■□□□ 1.14
CLN3-254ENST00000637050 TBC1D16Q8TBP0 767 aa22.19■■□□□ 1.14
CLN3-254ENST00000637050 SEC62Q99442 399 aaKnown RBP22.19■■□□□ 1.14
CLN3-254ENST00000637050 IQSEC3Q9UPP2 1182 aaPredicted RBP22.19■■□□□ 1.14
CLN3-254ENST00000637050 MYH7P12883 1935 aa22.19■■□□□ 1.14
CLN3-254ENST00000637050 CCDC171Q6TFL3 1326 aa22.19■■□□□ 1.14
CLN3-254ENST00000637050 MCCP23508 829 aa22.18■■□□□ 1.14
CLN3-254ENST00000637050 PTH1RQ03431 593 aa22.18■■□□□ 1.14
CLN3-254ENST00000637050 SLFNL1Q499Z3 407 aa22.18■■□□□ 1.14
CLN3-254ENST00000637050 ZSCAN25Q6NSZ9 544 aa22.18■■□□□ 1.14
CLN3-254ENST00000637050 CNKSR1Q969H4 720 aa22.18■■□□□ 1.14
CLN3-254ENST00000637050 POLLQ9UGP5 575 aa22.18■■□□□ 1.14
CLN3-254ENST00000637050 KIF13BQ9NQT8 1826 aa22.17■■□□□ 1.14
CLN3-254ENST00000637050 DLEC1Q9Y238 1755 aa22.17■■□□□ 1.14
CLN3-254ENST00000637050 IDH1O75874 414 aaKnown RBP22.17■■□□□ 1.14
CLN3-254ENST00000637050 HSPA4P34932 840 aa22.17■■□□□ 1.14
CLN3-254ENST00000637050 ADD2P35612 726 aa22.17■■□□□ 1.14
CLN3-254ENST00000637050 PRPF40BQ6NWY9 871 aaKnown RBP22.17■■□□□ 1.14
CLN3-254ENST00000637050 APPBP2Q92624 585 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms