RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 CAND2O75155 1236 aa7.91□□□□□ -1.14
SCN1A-213ENST00000636759 ERLIN1O75477 346 aa7.91□□□□□ -1.14
SCN1A-213ENST00000636759 TADA3O75528 432 aa7.91□□□□□ -1.14
SCN1A-213ENST00000636759 CAVIN2O95810 425 aa7.91□□□□□ -1.14
SCN1A-213ENST00000636759 FBXW10Q5XX13 1052 aa7.91□□□□□ -1.14
SCN1A-213ENST00000636759 SYTL4Q96C24 671 aaPredicted RBP7.91□□□□□ -1.14
SCN1A-213ENST00000636759 CABS1Q96KC9 395 aa7.91□□□□□ -1.14
SCN1A-213ENST00000636759 C1orf115Q9H7X2 142 aa7.91□□□□□ -1.14
SCN1A-213ENST00000636759 PDE11AQ9HCR9 933 aa7.91□□□□□ -1.14
SCN1A-213ENST00000636759 STX6O43752 255 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 INPP5BP32019 993 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 LONRF2Q1L5Z9 754 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 WWC2Q6AWC2 1192 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 ARMC2Q8NEN0 867 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 FAXDC2Q96IV6 333 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 COG3Q96JB2 828 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 USP16Q9Y5T5 823 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 SETD1BQ9UPS6 1966 aaKnown RBP7.9□□□□□ -1.14
SCN1A-213ENST00000636759 H3BQF6 201 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 GCKP35557 465 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 CLNS1AP54105 237 aaKnown RBP7.9□□□□□ -1.14
SCN1A-213ENST00000636759 RWDD2BP57060 319 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 ETF1P62495 437 aaKnown RBP7.9□□□□□ -1.14
SCN1A-213ENST00000636759 APOBRQ0VD83 1088 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 SCRN1Q12765 414 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 CRYMQ14894 314 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 CCDC93Q567U6 631 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 HDXQ7Z353 690 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 CNNM3Q8NE01 707 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 MRFAP1L1Q96HT8 127 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 PLEKHA4Q9H4M7 779 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 SMC3Q9UQE7 1217 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 FAN1Q9Y2M0 1017 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 TTC21AQ8NDW8 1320 aa7.9□□□□□ -1.14
SCN1A-213ENST00000636759 CHUKO15111 745 aa7.9□□□□□ -1.15
SCN1A-213ENST00000636759 F13A1P00488 732 aa7.9□□□□□ -1.15
SCN1A-213ENST00000636759 ADCY2Q08462 1091 aa7.9□□□□□ -1.15
SCN1A-213ENST00000636759 LRRC31Q6UY01 552 aa7.9□□□□□ -1.15
SCN1A-213ENST00000636759 FUT8Q9BYC5 575 aa7.9□□□□□ -1.15
SCN1A-213ENST00000636759 DNAJC25Q9H1X3 360 aa7.9□□□□□ -1.15
SCN1A-213ENST00000636759 A1CFQ9NQ94 594 aaKnown RBP7.9□□□□□ -1.15
SCN1A-213ENST00000636759 KDRP35968 1356 aa7.89□□□□□ -1.15
SCN1A-213ENST00000636759 MSH6P52701 1360 aa7.89□□□□□ -1.15
SCN1A-213ENST00000636759 CPLX2Q6PUV4 134 aaKnown RBP7.89□□□□□ -1.15
SCN1A-213ENST00000636759 PPP1R13BQ96KQ4 1090 aa7.89□□□□□ -1.15
SCN1A-213ENST00000636759 CCDC151A5D8V7 595 aa7.89□□□□□ -1.15
SCN1A-213ENST00000636759 PSDA5PKW4 1024 aaPredicted RBP7.89□□□□□ -1.15
SCN1A-213ENST00000636759 TMCO5BA8MYB1 307 aa7.89□□□□□ -1.15
SCN1A-213ENST00000636759 IBSPP21815 317 aaPredicted RBP7.89□□□□□ -1.15
SCN1A-213ENST00000636759 SFPQP23246 707 aaKnown RBP eCLIP7.89□□□□□ -1.15
SCN1A-213ENST00000636759 TRAF1Q13077 416 aa7.89□□□□□ -1.15
SCN1A-213ENST00000636759 DHX8Q14562 1220 aaKnown RBP7.89□□□□□ -1.15
SCN1A-213ENST00000636759 PLEKHO1Q53GL0 409 aaPredicted RBP7.89□□□□□ -1.15
SCN1A-213ENST00000636759 ZC3H12AQ5D1E8 599 aaKnown RBP7.89□□□□□ -1.15
SCN1A-213ENST00000636759 PRPF38AQ8NAV1 312 aaKnown RBP7.89□□□□□ -1.15
SCN1A-213ENST00000636759 OTUD7AQ8TE49 926 aaPredicted RBP7.89□□□□□ -1.15
SCN1A-213ENST00000636759 DDX19AQ9NUU7 478 aaKnown RBP7.89□□□□□ -1.15
SCN1A-213ENST00000636759 FAM83GA6ND36 823 aa7.89□□□□□ -1.15
SCN1A-213ENST00000636759 PHACTR2O75167 634 aa7.89□□□□□ -1.15
SCN1A-213ENST00000636759 KIAA0754O94854 1291 aa7.89□□□□□ -1.15
SCN1A-213ENST00000636759 SDSP20132 328 aa7.89□□□□□ -1.15
SCN1A-213ENST00000636759 CCZ1BP86790 482 aa7.89□□□□□ -1.15
SCN1A-213ENST00000636759 CCZ1P86791 482 aaPredicted RBP7.89□□□□□ -1.15
SCN1A-213ENST00000636759 BRD3Q15059 726 aa7.89□□□□□ -1.15
SCN1A-213ENST00000636759 PIK3R5Q8WYR1 880 aa7.89□□□□□ -1.15
SCN1A-213ENST00000636759 KAT2BQ92831 832 aa7.89□□□□□ -1.15
SCN1A-213ENST00000636759 BICC1Q9H694 974 aaKnown RBP7.89□□□□□ -1.15
SCN1A-213ENST00000636759 CHL1O00533 1208 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 ECM2O94769 699 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-213ENST00000636759 RBM5P52756 815 aaKnown RBP eCLIP7.88□□□□□ -1.15
SCN1A-213ENST00000636759 DNM1Q05193 864 aaKnown RBP7.88□□□□□ -1.15
SCN1A-213ENST00000636759 UPF3BQ9BZI7 483 aaKnown RBP7.88□□□□□ -1.15
SCN1A-213ENST00000636759 MYH15Q9Y2K3 1946 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 TTC41PQ6P2S7 1318 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 PHLPP2Q6ZVD8 1323 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 GPTP24298 496 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 KRT85P78386 507 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 CEP85Q6P2H3 762 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 C16orf71Q8IYS4 520 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-213ENST00000636759 ANKRD44Q8N8A2 993 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 CCDC150Q8NCX0 1101 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 GOLGA1Q92805 767 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 PARD6BQ9BYG5 372 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 EPC1Q9H2F5 836 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 SUDS3Q9H7L9 328 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-213ENST00000636759 RPAP1Q9BWH6 1393 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-213ENST00000636759 VPS37CA5D8V6 355 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-213ENST00000636759 PSMD2Q13200 908 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 NAA25Q14CX7 972 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 FAM71BQ8TC56 605 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 RABGGTAQ92696 567 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 OSBPL3Q9H4L5 887 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 ANO2Q9NQ90 1003 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 DACT1Q9NYF0 836 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 CAPN7Q9Y6W3 813 aa7.88□□□□□ -1.15
SCN1A-213ENST00000636759 PXDNLA1KZ92 1463 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 TRPM3Q9HCF6 1732 aaPredicted RBP7.87□□□□□ -1.15
SCN1A-213ENST00000636759 SHTN1A0MZ66 631 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 CDR1P51861 262 aa7.87□□□□□ -1.15
SCN1A-213ENST00000636759 GNAI1P63096 354 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms