RNA–Protein interactions for RNA: ENST00000629088.1

PNKP-222, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-222ENST00000629088 CDCA5Q96FF9 252 aa20.23■□□□□ 0.83
PNKP-222ENST00000629088 GREM2Q9H772 168 aa20.23■□□□□ 0.83
PNKP-222ENST00000629088 SAGE1Q9NXZ1 904 aa20.23■□□□□ 0.83
PNKP-222ENST00000629088 TRPA1O75762 1119 aa20.22■□□□□ 0.83
PNKP-222ENST00000629088 SCARF1Q14162 830 aa20.22■□□□□ 0.83
PNKP-222ENST00000629088 GCKRQ14397 625 aa20.22■□□□□ 0.83
PNKP-222ENST00000629088 UBE3BQ7Z3V4 1068 aa20.22■□□□□ 0.83
PNKP-222ENST00000629088 LINS1Q8NG48 757 aa20.22■□□□□ 0.83
PNKP-222ENST00000629088 DNAAF4Q8WXU2 420 aa20.22■□□□□ 0.83
PNKP-222ENST00000629088 MYH16Q9H6N6 1097 aa20.22■□□□□ 0.83
PNKP-222ENST00000629088 RNF186Q9NXI6 227 aa20.22■□□□□ 0.83
PNKP-222ENST00000629088 MINPP1Q9UNW1 487 aa20.22■□□□□ 0.83
PNKP-222ENST00000629088 SLC10A3P09131 477 aa20.21■□□□□ 0.83
PNKP-222ENST00000629088 ANGEL2Q5VTE6 544 aaKnown RBP20.21■□□□□ 0.83
PNKP-222ENST00000629088 CSRNP1Q96S65 589 aa20.21■□□□□ 0.83
PNKP-222ENST00000629088 VAMP4O75379 141 aa20.2■□□□□ 0.82
PNKP-222ENST00000629088 FKBP5Q13451 457 aaPredicted RBP20.2■□□□□ 0.82
PNKP-222ENST00000629088 GMLQ99445 158 aa20.2■□□□□ 0.82
PNKP-222ENST00000629088 USP17L3A6NCW0 530 aa20.19■□□□□ 0.82
PNKP-222ENST00000629088 USP17L4A6NCW7 530 aa20.19■□□□□ 0.82
PNKP-222ENST00000629088 WTIPA6NIX2 430 aaPredicted RBP20.19■□□□□ 0.82
PNKP-222ENST00000629088 IGHMBP2P38935 993 aaKnown RBP20.19■□□□□ 0.82
PNKP-222ENST00000629088 CASP7P55210 303 aa20.19■□□□□ 0.82
PNKP-222ENST00000629088 USP17L1Q7RTZ2 530 aa20.19■□□□□ 0.82
PNKP-222ENST00000629088 LEMD3Q9Y2U8 911 aa20.19■□□□□ 0.82
PNKP-222ENST00000629088 POLR2AP24928 1970 aaKnown RBP20.19■□□□□ 0.82
PNKP-222ENST00000629088 CSF1RP07333 972 aa20.18■□□□□ 0.82
PNKP-222ENST00000629088 CCT4P50991 539 aaKnown RBP20.18■□□□□ 0.82
PNKP-222ENST00000629088 MYOZ2Q9NPC6 264 aa20.18■□□□□ 0.82
PNKP-222ENST00000629088 USP17L8P0C7I0 530 aa20.17■□□□□ 0.82
PNKP-222ENST00000629088 ITGA6P23229 1130 aa20.17■□□□□ 0.82
PNKP-222ENST00000629088 MMP14P50281 582 aa20.17■□□□□ 0.82
PNKP-222ENST00000629088 RASAL3Q86YV0 1011 aa20.17■□□□□ 0.82
PNKP-222ENST00000629088 ANKRD2Q9GZV1 360 aa20.17■□□□□ 0.82
PNKP-222ENST00000629088 COA1Q9GZY4 146 aa20.17■□□□□ 0.82
PNKP-222ENST00000629088 SCAF8Q9UPN6 1271 aaKnown RBP20.17■□□□□ 0.82
PNKP-222ENST00000629088 MYO3BQ8WXR4 1341 aa20.17■□□□□ 0.82
PNKP-222ENST00000629088 PITPNM2Q9BZ72 1349 aa20.17■□□□□ 0.82
PNKP-222ENST00000629088 TNRC18O15417 2968 aaPredicted RBP20.16■□□□□ 0.82
PNKP-222ENST00000629088 EXOSC9Q06265 439 aaKnown RBP20.16■□□□□ 0.82
PNKP-222ENST00000629088 SPEF2Q9C093 1822 aa20.16■□□□□ 0.82
PNKP-222ENST00000629088 STRIP1Q5VSL9 837 aa20.15■□□□□ 0.82
PNKP-222ENST00000629088 MOB2Q70IA6 237 aa20.15■□□□□ 0.82
PNKP-222ENST00000629088 MPHOSPH8Q99549 860 aa20.15■□□□□ 0.82
PNKP-222ENST00000629088 FKBP1BP68106 108 aa20.14■□□□□ 0.81
PNKP-222ENST00000629088 PRAMEF18Q5VWM3 479 aa20.14■□□□□ 0.81
PNKP-222ENST00000629088 MXD3Q9BW11 206 aa20.14■□□□□ 0.81
PNKP-222ENST00000629088 ZNF804BA4D1E1 1349 aa20.13■□□□□ 0.81
PNKP-222ENST00000629088 DACT2Q5SW24 774 aa20.13■□□□□ 0.81
PNKP-222ENST00000629088 REM2Q8IYK8 340 aaPredicted RBP20.13■□□□□ 0.81
PNKP-222ENST00000629088 SALL2Q9Y467 1007 aaPredicted RBP20.13■□□□□ 0.81
PNKP-222ENST00000629088 UBE2Q2LH0YL09 131 aa20.12■□□□□ 0.81
PNKP-222ENST00000629088 SOX10P56693 466 aa20.12■□□□□ 0.81
PNKP-222ENST00000629088 NBPF9Q3BBW0 867 aa20.12■□□□□ 0.81
PNKP-222ENST00000629088 BEND3Q5T5X7 828 aa20.12■□□□□ 0.81
PNKP-222ENST00000629088 OGFOD1Q8N543 542 aa20.12■□□□□ 0.81
PNKP-222ENST00000629088 ZNF646O15015 1829 aaPredicted RBP20.11■□□□□ 0.81
PNKP-222ENST00000629088 ANKRD18BA2A2Z9 1011 aa20.11■□□□□ 0.81
PNKP-222ENST00000629088 CTU1Q7Z7A3 348 aaKnown RBP20.11■□□□□ 0.81
PNKP-222ENST00000629088 SPINK5Q9NQ38 1064 aaPredicted RBP20.11■□□□□ 0.81
PNKP-222ENST00000629088 FOXO4P98177 505 aa20.1■□□□□ 0.81
PNKP-222ENST00000629088 C15orf52Q6ZUT6 534 aaKnown RBP20.1■□□□□ 0.81
PNKP-222ENST00000629088 TXNRD3Q86VQ6 643 aa20.1■□□□□ 0.81
PNKP-222ENST00000629088 CHRNDQ07001 517 aa20.09■□□□□ 0.81
PNKP-222ENST00000629088 IFIT5Q13325 482 aaKnown RBP20.09■□□□□ 0.81
PNKP-222ENST00000629088 FBXW7Q969H0 707 aa20.09■□□□□ 0.81
PNKP-222ENST00000629088 PAPPA2Q9BXP8 1791 aa20.08■□□□□ 0.81
PNKP-222ENST00000629088 F6X3S4 739 aa20.08■□□□□ 0.81
PNKP-222ENST00000629088 GRM8O00222 908 aa20.08■□□□□ 0.81
PNKP-222ENST00000629088 WNT10BO00744 389 aa20.08■□□□□ 0.81
PNKP-222ENST00000629088 KCNJ4P48050 445 aa20.08■□□□□ 0.81
PNKP-222ENST00000629088 ALDH1L1O75891 902 aa20.07■□□□□ 0.8
PNKP-222ENST00000629088 TBC1D8O95759 1140 aa20.07■□□□□ 0.8
PNKP-222ENST00000629088 TTLL12Q14166 644 aaPredicted RBP20.07■□□□□ 0.8
PNKP-222ENST00000629088 TTLL5Q6EMB2 1281 aa20.07■□□□□ 0.8
PNKP-222ENST00000629088 FAM9BQ8IZU0 186 aa20.07■□□□□ 0.8
PNKP-222ENST00000629088 ZNF521Q96K83 1311 aa20.06■□□□□ 0.8
PNKP-222ENST00000629088 IRS2Q9Y4H2 1338 aa20.06■□□□□ 0.8
PNKP-222ENST00000629088 SASH1O94885 1247 aa20.06■□□□□ 0.8
PNKP-222ENST00000629088 KLRK1P26718 216 aa20.06■□□□□ 0.8
PNKP-222ENST00000629088 HDAC9Q9UKV0 1011 aa20.06■□□□□ 0.8
PNKP-222ENST00000629088 MKRN3Q13064 507 aaKnown RBP20.05■□□□□ 0.8
PNKP-222ENST00000629088 ZNF296Q8WUU4 475 aaPredicted RBP20.05■□□□□ 0.8
PNKP-222ENST00000629088 CD209Q9NNX6 404 aa20.05■□□□□ 0.8
PNKP-222ENST00000629088 HPS5Q9UPZ3 1129 aa20.05■□□□□ 0.8
PNKP-222ENST00000629088 PDE4DIPQ5VU43 2346 aa20.05■□□□□ 0.8
PNKP-222ENST00000629088 AKAP11Q9UKA4 1901 aa20.04■□□□□ 0.8
PNKP-222ENST00000629088 TM4SF4P48230 202 aa20.04■□□□□ 0.8
PNKP-222ENST00000629088 CCDC57Q2TAC2 916 aa20.04■□□□□ 0.8
PNKP-222ENST00000629088 LMBR1LQ6UX01 489 aa20.04■□□□□ 0.8
PNKP-222ENST00000629088 SRCIN1Q9C0H9 1055 aa20.04■□□□□ 0.8
PNKP-222ENST00000629088 C9orf78Q9NZ63 289 aaPredicted RBP20.04■□□□□ 0.8
PNKP-222ENST00000629088 NF2P35240 595 aa20.03■□□□□ 0.8
PNKP-222ENST00000629088 GTF2IP78347 998 aa20.03■□□□□ 0.8
PNKP-222ENST00000629088 PTPN12Q05209 780 aaKnown RBP20.03■□□□□ 0.8
PNKP-222ENST00000629088 ZNF804AQ7Z570 1209 aa20.03■□□□□ 0.8
PNKP-222ENST00000629088 ZBED3Q96IU2 234 aaPredicted RBP20.03■□□□□ 0.8
PNKP-222ENST00000629088 CHMP3Q9Y3E7 222 aa20.03■□□□□ 0.8
PNKP-222ENST00000629088 A0A1B0GUL6 1792 aa20.03■□□□□ 0.8
PNKP-222ENST00000629088 IL1R1P14778 569 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms