RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 SUPT16HQ9Y5B9 1047 aaKnown RBP25.21■■□□□ 1.63
PTCD3-220ENST00000627371 ARAP2Q8WZ64 1704 aa25.2■■□□□ 1.63
PTCD3-220ENST00000627371 DDNO94850 711 aaPredicted RBP25.2■■□□□ 1.62
PTCD3-220ENST00000627371 GPC2Q8N158 579 aa25.2■■□□□ 1.62
PTCD3-220ENST00000627371 CXCL9Q07325 125 aa25.19■■□□□ 1.62
PTCD3-220ENST00000627371 PUM3Q15397 648 aaKnown RBP25.19■■□□□ 1.62
PTCD3-220ENST00000627371 COA1Q9GZY4 146 aa25.19■■□□□ 1.62
PTCD3-220ENST00000627371 CEP126Q9P2H0 1117 aa25.19■■□□□ 1.62
PTCD3-220ENST00000627371 CIAPIN1Q6FI81 312 aa25.18■■□□□ 1.62
PTCD3-220ENST00000627371 PODNQ7Z5L7 613 aa25.18■■□□□ 1.62
PTCD3-220ENST00000627371 CRBNQ96SW2 442 aa25.18■■□□□ 1.62
PTCD3-220ENST00000627371 RAD17O75943 681 aa25.17■■□□□ 1.62
PTCD3-220ENST00000627371 FGFR2P21802 821 aa25.17■■□□□ 1.62
PTCD3-220ENST00000627371 G3BP1Q13283 466 aaKnown RBP eCLIP25.17■■□□□ 1.62
PTCD3-220ENST00000627371 L3MBTL3Q96JM7 780 aaPredicted RBP25.17■■□□□ 1.62
PTCD3-220ENST00000627371 MYH13Q9UKX3 1938 aa25.17■■□□□ 1.62
PTCD3-220ENST00000627371 TNIP1Q15025 636 aa25.16■■□□□ 1.62
PTCD3-220ENST00000627371 NMRK2Q9NPI5 230 aa25.16■■□□□ 1.62
PTCD3-220ENST00000627371 NOP58Q9Y2X3 529 aaKnown RBP25.16■■□□□ 1.62
PTCD3-220ENST00000627371 GJA3Q9Y6H8 435 aa25.16■■□□□ 1.62
PTCD3-220ENST00000627371 HMMRO75330 724 aa25.15■■□□□ 1.62
PTCD3-220ENST00000627371 SURF6O75683 361 aaKnown RBP25.15■■□□□ 1.62
PTCD3-220ENST00000627371 ZNF804AQ7Z570 1209 aa25.15■■□□□ 1.62
PTCD3-220ENST00000627371 SIRT2Q8IXJ6 389 aa25.15■■□□□ 1.62
PTCD3-220ENST00000627371 LPIN2Q92539 896 aa25.15■■□□□ 1.62
PTCD3-220ENST00000627371 CD209Q9NNX6 404 aa25.14■■□□□ 1.62
PTCD3-220ENST00000627371 KCNQ5Q9NR82 932 aa25.14■■□□□ 1.62
PTCD3-220ENST00000627371 PSMD14O00487 310 aa25.13■■□□□ 1.61
PTCD3-220ENST00000627371 IFIT1P09914 478 aaKnown RBP25.13■■□□□ 1.61
PTCD3-220ENST00000627371 SLC5A1P13866 664 aa25.13■■□□□ 1.61
PTCD3-220ENST00000627371 TFCP2Q12800 502 aa25.13■■□□□ 1.61
PTCD3-220ENST00000627371 ATP2B3Q16720 1220 aa25.13■■□□□ 1.61
PTCD3-220ENST00000627371 RRAGCQ9HB90 399 aa25.13■■□□□ 1.61
PTCD3-220ENST00000627371 POTECB2RU33 542 aa25.12■■□□□ 1.61
PTCD3-220ENST00000627371 IL1R1P14778 569 aa25.12■■□□□ 1.61
PTCD3-220ENST00000627371 GYG1P46976 350 aa25.12■■□□□ 1.61
PTCD3-220ENST00000627371 OS9Q13438 667 aaPredicted RBP25.12■■□□□ 1.61
PTCD3-220ENST00000627371 FAM84BQ96KN1 310 aaPredicted RBP25.12■■□□□ 1.61
PTCD3-220ENST00000627371 ZNF609O15014 1411 aa25.12■■□□□ 1.61
PTCD3-220ENST00000627371 SASH1O94885 1247 aa25.11■■□□□ 1.61
PTCD3-220ENST00000627371 VEGFAP15692 232 aaPredicted RBP25.11■■□□□ 1.61
PTCD3-220ENST00000627371 HIBADHP31937 336 aaKnown RBP25.11■■□□□ 1.61
PTCD3-220ENST00000627371 AKAP2Q9Y2D5 859 aa25.11■■□□□ 1.61
PTCD3-220ENST00000627371 IQCA1LA6NCM1 817 aa25.1■■□□□ 1.61
PTCD3-220ENST00000627371 USP17L3A6NCW0 530 aa25.1■■□□□ 1.61
PTCD3-220ENST00000627371 USP17L4A6NCW7 530 aa25.1■■□□□ 1.61
PTCD3-220ENST00000627371 KIF3CO14782 793 aa25.1■■□□□ 1.61
PTCD3-220ENST00000627371 VIL1P09327 827 aaKnown RBP25.1■■□□□ 1.61
PTCD3-220ENST00000627371 SCNN1DP51172 638 aa25.1■■□□□ 1.61
PTCD3-220ENST00000627371 CAVIN4Q5BKX8 364 aa25.1■■□□□ 1.61
PTCD3-220ENST00000627371 USP17L1Q7RTZ2 530 aa25.1■■□□□ 1.61
PTCD3-220ENST00000627371 FBXO33Q7Z6M2 555 aa25.1■■□□□ 1.61
PTCD3-220ENST00000627371 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.1■■□□□ 1.61
PTCD3-220ENST00000627371 GMPSP49915 693 aaPredicted RBP25.09■■□□□ 1.61
PTCD3-220ENST00000627371 VPS37DQ86XT2 251 aa25.09■■□□□ 1.61
PTCD3-220ENST00000627371 EXOC6BQ9Y2D4 811 aa25.09■■□□□ 1.61
PTCD3-220ENST00000627371 RPS12P25398 132 aaKnown RBP25.08■■□□□ 1.61
PTCD3-220ENST00000627371 AAMPQ13685 434 aa25.08■■□□□ 1.61
PTCD3-220ENST00000627371 HSP90AB4PQ58FF6 505 aa25.08■■□□□ 1.61
PTCD3-220ENST00000627371 STRIP1Q5VSL9 837 aa25.08■■□□□ 1.61
PTCD3-220ENST00000627371 TDRD7Q8NHU6 1098 aaKnown RBP25.08■■□□□ 1.61
PTCD3-220ENST00000627371 HACL1Q9UJ83 578 aa25.08■■□□□ 1.61
PTCD3-220ENST00000627371 A0A1B0GUL7 405 aa25.07■■□□□ 1.6
PTCD3-220ENST00000627371 LMOD1P29536 600 aaPredicted RBP25.07■■□□□ 1.6
PTCD3-220ENST00000627371 RSBN1LQ6PCB5 846 aaPredicted RBP25.07■■□□□ 1.6
PTCD3-220ENST00000627371 ERC1Q8IUD2 1116 aa25.07■■□□□ 1.6
PTCD3-220ENST00000627371 GPRC5DQ9NZD1 345 aa25.07■■□□□ 1.6
PTCD3-220ENST00000627371 ZBTB12Q9Y330 459 aaPredicted RBP25.07■■□□□ 1.6
PTCD3-220ENST00000627371 PCDHB15Q9Y5E8 787 aa25.07■■□□□ 1.6
PTCD3-220ENST00000627371 BCAMP50895 628 aa25.06■■□□□ 1.6
PTCD3-220ENST00000627371 DACT2Q5SW24 774 aa25.06■■□□□ 1.6
PTCD3-220ENST00000627371 TTLL5Q6EMB2 1281 aa25.06■■□□□ 1.6
PTCD3-220ENST00000627371 DPF2Q92785 391 aa25.06■■□□□ 1.6
PTCD3-220ENST00000627371 FBXW7Q969H0 707 aa25.06■■□□□ 1.6
PTCD3-220ENST00000627371 GPR108Q9NPR9 543 aa25.06■■□□□ 1.6
PTCD3-220ENST00000627371 TIMM10P62072 90 aa25.05■■□□□ 1.6
PTCD3-220ENST00000627371 GTF2IP78347 998 aa25.05■■□□□ 1.6
PTCD3-220ENST00000627371 AGBL3Q8NEM8 1001 aa25.05■■□□□ 1.6
PTCD3-220ENST00000627371 TAF1DQ9H5J8 278 aaPredicted RBP25.05■■□□□ 1.6
PTCD3-220ENST00000627371 ADAMTSL1Q8N6G6 1762 aa25.05■■□□□ 1.6
PTCD3-220ENST00000627371 ADORA1P30542 326 aa25.04■■□□□ 1.6
PTCD3-220ENST00000627371 EPHX2P34913 555 aa25.04■■□□□ 1.6
PTCD3-220ENST00000627371 TNNI3KQ59H18 835 aa25.04■■□□□ 1.6
PTCD3-220ENST00000627371 EXOC6Q8TAG9 804 aa25.04■■□□□ 1.6
PTCD3-220ENST00000627371 FPGT-TNNI3KV9GXZ4 949 aa25.04■■□□□ 1.6
PTCD3-220ENST00000627371 FAM205AQ6ZU69 1335 aa25.04■■□□□ 1.6
PTCD3-220ENST00000627371 MYO3BQ8WXR4 1341 aa25.04■■□□□ 1.6
PTCD3-220ENST00000627371 EPS15P42566 896 aa25.03■■□□□ 1.6
PTCD3-220ENST00000627371 XAGE2Q96GT9 111 aa25.03■■□□□ 1.6
PTCD3-220ENST00000627371 GMLQ99445 158 aa25.03■■□□□ 1.6
PTCD3-220ENST00000627371 RAB11FIP3O75154 756 aa25.02■■□□□ 1.6
PTCD3-220ENST00000627371 C16orf71Q8IYS4 520 aaPredicted RBP25.02■■□□□ 1.6
PTCD3-220ENST00000627371 NEUROD6Q96NK8 337 aa25.02■■□□□ 1.6
PTCD3-220ENST00000627371 MXD3Q9BW11 206 aa25.02■■□□□ 1.6
PTCD3-220ENST00000627371 CNOT7Q9UIV1 285 aaKnown RBP25.02■■□□□ 1.6
PTCD3-220ENST00000627371 IQSEC3Q9UPP2 1182 aaPredicted RBP25.02■■□□□ 1.6
PTCD3-220ENST00000627371 ZBTB22O15209 634 aa25.01■■□□□ 1.59
PTCD3-220ENST00000627371 FKBP1AP62942 108 aaKnown RBP25.01■■□□□ 1.59
PTCD3-220ENST00000627371 MICALL2Q8IY33 904 aa25.01■■□□□ 1.59
PTCD3-220ENST00000627371 RHPN1Q8TCX5 695 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms