RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 SCN9AQ15858 1988 aa18.31■□□□□ 0.52
PNKP-221ENST00000627317 PSMD14O00487 310 aa18.3■□□□□ 0.52
PNKP-221ENST00000627317 ATP2B4P23634 1241 aa18.3■□□□□ 0.52
PNKP-221ENST00000627317 LDHAL6AQ6ZMR3 332 aa18.3■□□□□ 0.52
PNKP-221ENST00000627317 USP50Q70EL3 339 aaPredicted RBP18.3■□□□□ 0.52
PNKP-221ENST00000627317 CNNM1Q9NRU3 951 aa18.3■□□□□ 0.52
PNKP-221ENST00000627317 IRS2Q9Y4H2 1338 aa18.29■□□□□ 0.52
PNKP-221ENST00000627317 SHTN1A0MZ66 631 aa18.29■□□□□ 0.52
PNKP-221ENST00000627317 IRX6P78412 446 aaPredicted RBP18.29■□□□□ 0.52
PNKP-221ENST00000627317 CEP85Q6P2H3 762 aa18.29■□□□□ 0.52
PNKP-221ENST00000627317 KLHDC4Q8TBB5 520 aa18.29■□□□□ 0.52
PNKP-221ENST00000627317 ZC3H12CQ9C0D7 883 aaKnown RBP18.29■□□□□ 0.52
PNKP-221ENST00000627317 ADARB2Q9NS39 739 aaKnown RBP18.29■□□□□ 0.52
PNKP-221ENST00000627317 PCNTO95613 3336 aa18.29■□□□□ 0.52
PNKP-221ENST00000627317 A0A1B0GUL6 1792 aa18.28■□□□□ 0.52
PNKP-221ENST00000627317 PNMA6EA0A0J9YXQ4 647 aa18.28■□□□□ 0.52
PNKP-221ENST00000627317 RFX5P48382 616 aaPredicted RBP18.28■□□□□ 0.52
PNKP-221ENST00000627317 ATP8B2P98198 1209 aa18.28■□□□□ 0.52
PNKP-221ENST00000627317 MAP1SQ66K74 1059 aaPredicted RBP18.28■□□□□ 0.52
PNKP-221ENST00000627317 DPF2Q92785 391 aa18.28■□□□□ 0.52
PNKP-221ENST00000627317 ZBTB12Q9Y330 459 aaPredicted RBP18.28■□□□□ 0.52
PNKP-221ENST00000627317 ZNF646O15015 1829 aaPredicted RBP18.28■□□□□ 0.52
PNKP-221ENST00000627317 VIL1P09327 827 aaKnown RBP18.27■□□□□ 0.52
PNKP-221ENST00000627317 KLRK1P26718 216 aa18.27■□□□□ 0.52
PNKP-221ENST00000627317 PTPN12Q05209 780 aaKnown RBP18.27■□□□□ 0.52
PNKP-221ENST00000627317 KLRG1Q96E93 195 aa18.27■□□□□ 0.52
PNKP-221ENST00000627317 SIL1Q9H173 461 aa18.27■□□□□ 0.52
PNKP-221ENST00000627317 PGAP2Q9UHJ9 254 aa18.27■□□□□ 0.52
PNKP-221ENST00000627317 HMMRO75330 724 aa18.26■□□□□ 0.51
PNKP-221ENST00000627317 RPS12P25398 132 aaKnown RBP18.26■□□□□ 0.51
PNKP-221ENST00000627317 HIRAP54198 1017 aaPredicted RBP18.26■□□□□ 0.51
PNKP-221ENST00000627317 CHRNDQ07001 517 aa18.26■□□□□ 0.51
PNKP-221ENST00000627317 TXNRD3Q86VQ6 643 aa18.26■□□□□ 0.51
PNKP-221ENST00000627317 RPAP2Q8IXW5 612 aaPredicted RBP18.26■□□□□ 0.51
PNKP-221ENST00000627317 MICALL2Q8IY33 904 aa18.26■□□□□ 0.51
PNKP-221ENST00000627317 CNTROBQ8N137 903 aa18.26■□□□□ 0.51
PNKP-221ENST00000627317 EXOC6Q8TAG9 804 aa18.26■□□□□ 0.51
PNKP-221ENST00000627317 TRPM4Q8TD43 1214 aa18.26■□□□□ 0.51
PNKP-221ENST00000627317 ANKRD2Q9GZV1 360 aa18.26■□□□□ 0.51
PNKP-221ENST00000627317 CREBZFQ9NS37 354 aa18.26■□□□□ 0.51
PNKP-221ENST00000627317 PA2G4Q9UQ80 394 aaKnown RBP18.26■□□□□ 0.51
PNKP-221ENST00000627317 LEMD3Q9Y2U8 911 aa18.26■□□□□ 0.51
PNKP-221ENST00000627317 PSME4Q14997 1843 aa18.26■□□□□ 0.51
PNKP-221ENST00000627317 EYA2O00167 538 aa18.25■□□□□ 0.51
PNKP-221ENST00000627317 AAMPQ13685 434 aa18.25■□□□□ 0.51
PNKP-221ENST00000627317 POLA2Q14181 598 aa18.25■□□□□ 0.51
PNKP-221ENST00000627317 JMYQ8N9B5 988 aa18.25■□□□□ 0.51
PNKP-221ENST00000627317 SSH3Q8TE77 659 aa18.25■□□□□ 0.51
PNKP-221ENST00000627317 PUS3Q9BZE2 481 aaKnown RBP18.25■□□□□ 0.51
PNKP-221ENST00000627317 COPRSQ9NQ92 184 aa18.25■□□□□ 0.51
PNKP-221ENST00000627317 CNOT7Q9UIV1 285 aaKnown RBP18.25■□□□□ 0.51
PNKP-221ENST00000627317 ZNF804BA4D1E1 1349 aa18.24■□□□□ 0.51
PNKP-221ENST00000627317 EGFRP00533 1210 aa18.24■□□□□ 0.51
PNKP-221ENST00000627317 LRRC24Q50LG9 513 aa18.24■□□□□ 0.51
PNKP-221ENST00000627317 METTL24Q5JXM2 366 aa18.24■□□□□ 0.51
PNKP-221ENST00000627317 PODNQ7Z5L7 613 aa18.24■□□□□ 0.51
PNKP-221ENST00000627317 GMLQ99445 158 aa18.24■□□□□ 0.51
PNKP-221ENST00000627317 FBXO3Q9UK99 471 aa18.24■□□□□ 0.51
PNKP-221ENST00000627317 CLEC11AQ9Y240 323 aa18.24■□□□□ 0.51
PNKP-221ENST00000627317 MROH5Q6ZUA9 1318 aa18.23■□□□□ 0.51
PNKP-221ENST00000627317 CIAO1O76071 339 aa18.23■□□□□ 0.51
PNKP-221ENST00000627317 KCNJ4P48050 445 aa18.23■□□□□ 0.51
PNKP-221ENST00000627317 C15orf52Q6ZUT6 534 aaKnown RBP18.23■□□□□ 0.51
PNKP-221ENST00000627317 RIPOR2Q9Y4F9 1068 aa18.23■□□□□ 0.51
PNKP-221ENST00000627317 SNAP23O00161 211 aa18.22■□□□□ 0.51
PNKP-221ENST00000627317 NEFLP07196 543 aa18.22■□□□□ 0.51
PNKP-221ENST00000627317 ZNF280AP59817 542 aaPredicted RBP18.22■□□□□ 0.51
PNKP-221ENST00000627317 OS9Q13438 667 aaPredicted RBP18.22■□□□□ 0.51
PNKP-221ENST00000627317 RSBN1LQ6PCB5 846 aaPredicted RBP18.22■□□□□ 0.51
PNKP-221ENST00000627317 HELBQ8NG08 1087 aaPredicted RBP18.22■□□□□ 0.51
PNKP-221ENST00000627317 ZC3H15Q8WU90 426 aaKnown RBP18.22■□□□□ 0.51
PNKP-221ENST00000627317 COA1Q9GZY4 146 aa18.22■□□□□ 0.51
PNKP-221ENST00000627317 TAF5LO75529 589 aa18.21■□□□□ 0.51
PNKP-221ENST00000627317 SURF6O75683 361 aaKnown RBP18.21■□□□□ 0.51
PNKP-221ENST00000627317 IL15P40933 162 aaPredicted RBP18.21■□□□□ 0.51
PNKP-221ENST00000627317 FMR1Q06787 632 aaKnown RBP eCLIP18.21■□□□□ 0.51
PNKP-221ENST00000627317 G3BP1Q13283 466 aaKnown RBP eCLIP18.21■□□□□ 0.51
PNKP-221ENST00000627317 SAMD7Q7Z3H4 446 aa18.21■□□□□ 0.51
PNKP-221ENST00000627317 SIRT2Q8IXJ6 389 aa18.21■□□□□ 0.51
PNKP-221ENST00000627317 USP17L3A6NCW0 530 aa18.2■□□□□ 0.5
PNKP-221ENST00000627317 USP17L4A6NCW7 530 aa18.2■□□□□ 0.5
PNKP-221ENST00000627317 TMEM88BA6NKF7 163 aa18.2■□□□□ 0.5
PNKP-221ENST00000627317 H7C1D1 291 aa18.2■□□□□ 0.5
PNKP-221ENST00000627317 TRAF5O00463 557 aa18.2■□□□□ 0.5
PNKP-221ENST00000627317 DACT2Q5SW24 774 aa18.2■□□□□ 0.5
PNKP-221ENST00000627317 USP17L1Q7RTZ2 530 aa18.2■□□□□ 0.5
PNKP-221ENST00000627317 ATG9AQ7Z3C6 839 aa18.2■□□□□ 0.5
PNKP-221ENST00000627317 AGBL3Q8NEM8 1001 aa18.2■□□□□ 0.5
PNKP-221ENST00000627317 PCDHB15Q9Y5E8 787 aa18.2■□□□□ 0.5
PNKP-221ENST00000627317 CNTNAP1P78357 1384 aa18.19■□□□□ 0.5
PNKP-221ENST00000627317 G3V3G9 751 aa18.19■□□□□ 0.5
PNKP-221ENST00000627317 DCAF8Q5TAQ9 597 aa18.19■□□□□ 0.5
PNKP-221ENST00000627317 CEP126Q9P2H0 1117 aa18.19■□□□□ 0.5
PNKP-221ENST00000627317 TBC1D10BQ4KMP7 808 aaPredicted RBP18.18■□□□□ 0.5
PNKP-221ENST00000627317 HSP90AB4PQ58FF6 505 aa18.18■□□□□ 0.5
PNKP-221ENST00000627317 STRIP1Q5VSL9 837 aa18.18■□□□□ 0.5
PNKP-221ENST00000627317 NOP58Q9Y2X3 529 aaKnown RBP18.18■□□□□ 0.5
PNKP-221ENST00000627317 PDE8BO95263 885 aa18.17■□□□□ 0.5
PNKP-221ENST00000627317 PUM3Q15397 648 aaKnown RBP18.17■□□□□ 0.5
PNKP-221ENST00000627317 CST9Q5W186 159 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms