RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 TFCP2Q12800 502 aa23.62■■□□□ 1.37
SQSTM1-216ENST00000626660 ATP2B3Q16720 1220 aa23.62■■□□□ 1.37
SQSTM1-216ENST00000626660 C15orf52Q6ZUT6 534 aaKnown RBP23.62■■□□□ 1.37
SQSTM1-216ENST00000626660 ERC1Q8IUD2 1116 aa23.62■■□□□ 1.37
SQSTM1-216ENST00000626660 ZNRF3Q9ULT6 936 aa23.62■■□□□ 1.37
SQSTM1-216ENST00000626660 EXOC6BQ9Y2D4 811 aa23.62■■□□□ 1.37
SQSTM1-216ENST00000626660 AKAP2Q9Y2D5 859 aa23.62■■□□□ 1.37
SQSTM1-216ENST00000626660 COL4A5P29400 1685 aa23.61■■□□□ 1.37
SQSTM1-216ENST00000626660 DOK7Q18PE1 504 aa23.61■■□□□ 1.37
SQSTM1-216ENST00000626660 LPIN2Q92539 896 aa23.61■■□□□ 1.37
SQSTM1-216ENST00000626660 DBNDD1Q9H9R9 158 aa23.61■■□□□ 1.37
SQSTM1-216ENST00000626660 ECE2O60344 883 aa23.6■■□□□ 1.37
SQSTM1-216ENST00000626660 KLRK1P26718 216 aa23.6■■□□□ 1.37
SQSTM1-216ENST00000626660 ZNF804AQ7Z570 1209 aa23.6■■□□□ 1.37
SQSTM1-216ENST00000626660 COA1Q9GZY4 146 aa23.6■■□□□ 1.37
SQSTM1-216ENST00000626660 FZD9O00144 591 aa23.59■■□□□ 1.37
SQSTM1-216ENST00000626660 FGFR2P21802 821 aa23.59■■□□□ 1.37
SQSTM1-216ENST00000626660 DPY19L2Q6NUT2 758 aa23.59■■□□□ 1.37
SQSTM1-216ENST00000626660 TXNRD3Q86VQ6 643 aa23.59■■□□□ 1.37
SQSTM1-216ENST00000626660 RAB11FIP3O75154 756 aa23.58■■□□□ 1.37
SQSTM1-216ENST00000626660 SASH1O94885 1247 aa23.58■■□□□ 1.37
SQSTM1-216ENST00000626660 NEFLP07196 543 aa23.58■■□□□ 1.37
SQSTM1-216ENST00000626660 CAVIN4Q5BKX8 364 aa23.58■■□□□ 1.37
SQSTM1-216ENST00000626660 VPS37DQ86XT2 251 aa23.58■■□□□ 1.37
SQSTM1-216ENST00000626660 IRS2Q9Y4H2 1338 aa23.58■■□□□ 1.36
SQSTM1-216ENST00000626660 PODNQ7Z5L7 613 aa23.57■■□□□ 1.36
SQSTM1-216ENST00000626660 HIBADHP31937 336 aaKnown RBP23.56■■□□□ 1.36
SQSTM1-216ENST00000626660 GPR108Q9NPR9 543 aa23.56■■□□□ 1.36
SQSTM1-216ENST00000626660 ZNF541Q9H0D2 1346 aa23.56■■□□□ 1.36
SQSTM1-216ENST00000626660 APBB1O00213 710 aa23.55■■□□□ 1.36
SQSTM1-216ENST00000626660 HSPA6P17066 643 aa23.55■■□□□ 1.36
SQSTM1-216ENST00000626660 GYG1P46976 350 aa23.55■■□□□ 1.36
SQSTM1-216ENST00000626660 TNIP1Q15025 636 aa23.55■■□□□ 1.36
SQSTM1-216ENST00000626660 CIAPIN1Q6FI81 312 aa23.55■■□□□ 1.36
SQSTM1-216ENST00000626660 KIF1BPQ96EK5 621 aa23.55■■□□□ 1.36
SQSTM1-216ENST00000626660 NEUROD6Q96NK8 337 aa23.55■■□□□ 1.36
SQSTM1-216ENST00000626660 ARAP2Q8WZ64 1704 aa23.55■■□□□ 1.36
SQSTM1-216ENST00000626660 KDM2BQ8NHM5 1336 aa23.55■■□□□ 1.36
SQSTM1-216ENST00000626660 ZNF609O15014 1411 aa23.54■■□□□ 1.36
SQSTM1-216ENST00000626660 A0A1B0GUL7 405 aa23.54■■□□□ 1.36
SQSTM1-216ENST00000626660 GLTPD2A6NH11 291 aa23.54■■□□□ 1.36
SQSTM1-216ENST00000626660 YDJCA8MPS7 323 aa23.54■■□□□ 1.36
SQSTM1-216ENST00000626660 RAD17O75943 681 aa23.54■■□□□ 1.36
SQSTM1-216ENST00000626660 HDAC1Q13547 482 aaPredicted RBP23.54■■□□□ 1.36
SQSTM1-216ENST00000626660 RHPN1Q8TCX5 695 aa23.54■■□□□ 1.36
SQSTM1-216ENST00000626660 FAM84BQ96KN1 310 aaPredicted RBP23.54■■□□□ 1.36
SQSTM1-216ENST00000626660 RWDD1Q9H446 243 aaPredicted RBP23.54■■□□□ 1.36
SQSTM1-216ENST00000626660 DCTPP1Q9H773 170 aa23.54■■□□□ 1.36
SQSTM1-216ENST00000626660 CD209Q9NNX6 404 aa23.54■■□□□ 1.36
SQSTM1-216ENST00000626660 SCN9AQ15858 1988 aa23.54■■□□□ 1.36
SQSTM1-216ENST00000626660 CEP350Q5VT06 3117 aa23.53■■□□□ 1.36
SQSTM1-216ENST00000626660 TIMM10P62072 90 aa23.53■■□□□ 1.36
SQSTM1-216ENST00000626660 CXCL9Q07325 125 aa23.53■■□□□ 1.36
SQSTM1-216ENST00000626660 TNNI3KQ59H18 835 aa23.53■■□□□ 1.36
SQSTM1-216ENST00000626660 FBXO33Q7Z6M2 555 aa23.53■■□□□ 1.36
SQSTM1-216ENST00000626660 GJA3Q9Y6H8 435 aa23.53■■□□□ 1.36
SQSTM1-216ENST00000626660 FPGT-TNNI3KV9GXZ4 949 aa23.53■■□□□ 1.36
SQSTM1-216ENST00000626660 PSME4Q14997 1843 aa23.52■■□□□ 1.36
SQSTM1-216ENST00000626660 GORABQ5T7V8 394 aa23.52■■□□□ 1.36
SQSTM1-216ENST00000626660 GPC2Q8N158 579 aa23.52■■□□□ 1.36
SQSTM1-216ENST00000626660 USP17L3A6NCW0 530 aa23.51■■□□□ 1.35
SQSTM1-216ENST00000626660 USP17L4A6NCW7 530 aa23.51■■□□□ 1.35
SQSTM1-216ENST00000626660 FRAT2O75474 233 aaPredicted RBP23.51■■□□□ 1.35
SQSTM1-216ENST00000626660 IL1R1P14778 569 aa23.51■■□□□ 1.35
SQSTM1-216ENST00000626660 BCAMP50895 628 aa23.51■■□□□ 1.35
SQSTM1-216ENST00000626660 USP17L1Q7RTZ2 530 aa23.51■■□□□ 1.35
SQSTM1-216ENST00000626660 CLASRPQ8N2M8 674 aaKnown RBP23.51■■□□□ 1.35
SQSTM1-216ENST00000626660 FBXW7Q969H0 707 aa23.51■■□□□ 1.35
SQSTM1-216ENST00000626660 LRRCC1Q9C099 1032 aa23.51■■□□□ 1.35
SQSTM1-216ENST00000626660 GNL3LQ9NVN8 582 aaKnown RBP23.51■■□□□ 1.35
SQSTM1-216ENST00000626660 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.51■■□□□ 1.35
SQSTM1-216ENST00000626660 DDNO94850 711 aaPredicted RBP23.5■■□□□ 1.35
SQSTM1-216ENST00000626660 ADORA1P30542 326 aa23.5■■□□□ 1.35
SQSTM1-216ENST00000626660 XAGE2Q96GT9 111 aa23.5■■□□□ 1.35
SQSTM1-216ENST00000626660 IL1RAPL2Q9NP60 686 aa23.5■■□□□ 1.35
SQSTM1-216ENST00000626660 KCNQ5Q9NR82 932 aa23.5■■□□□ 1.35
SQSTM1-216ENST00000626660 MYH13Q9UKX3 1938 aa23.5■■□□□ 1.35
SQSTM1-216ENST00000626660 PSMD14O00487 310 aa23.49■■□□□ 1.35
SQSTM1-216ENST00000626660 TDRD7Q8NHU6 1098 aaKnown RBP23.49■■□□□ 1.35
SQSTM1-216ENST00000626660 STRIP1Q5VSL9 837 aa23.48■■□□□ 1.35
SQSTM1-216ENST00000626660 AACSQ86V21 672 aa23.48■■□□□ 1.35
SQSTM1-216ENST00000626660 GCC1Q96CN9 775 aa23.48■■□□□ 1.35
SQSTM1-216ENST00000626660 ZBTB47Q9UFB7 747 aaPredicted RBP23.48■■□□□ 1.35
SQSTM1-216ENST00000626660 GTF2IP78347 998 aa23.47■■□□□ 1.35
SQSTM1-216ENST00000626660 CCDC102BQ68D86 513 aa23.47■■□□□ 1.35
SQSTM1-216ENST00000626660 TTLL5Q6EMB2 1281 aa23.47■■□□□ 1.35
SQSTM1-216ENST00000626660 EAF2Q96CJ1 260 aaPredicted RBP23.47■■□□□ 1.35
SQSTM1-216ENST00000626660 BCL11AQ9H165 835 aa23.47■■□□□ 1.35
SQSTM1-216ENST00000626660 IQSEC3Q9UPP2 1182 aaPredicted RBP23.47■■□□□ 1.35
SQSTM1-216ENST00000626660 VIL1P09327 827 aaKnown RBP23.46■■□□□ 1.35
SQSTM1-216ENST00000626660 PHKA1P46020 1223 aa23.46■■□□□ 1.35
SQSTM1-216ENST00000626660 L3MBTL3Q96JM7 780 aaPredicted RBP23.46■■□□□ 1.35
SQSTM1-216ENST00000626660 WDR90Q96KV7 1748 aa23.46■■□□□ 1.35
SQSTM1-216ENST00000626660 CCDC8Q9H0W5 538 aaPredicted RBP23.46■■□□□ 1.35
SQSTM1-216ENST00000626660 FAM205AQ6ZU69 1335 aa23.45■■□□□ 1.34
SQSTM1-216ENST00000626660 SEMA3EO15041 775 aa23.45■■□□□ 1.34
SQSTM1-216ENST00000626660 IFIT2P09913 472 aaKnown RBP23.45■■□□□ 1.34
SQSTM1-216ENST00000626660 RPS12P25398 132 aaKnown RBP23.45■■□□□ 1.34
SQSTM1-216ENST00000626660 LMOD1P29536 600 aaPredicted RBP23.45■■□□□ 1.34
SQSTM1-216ENST00000626660 GMPSP49915 693 aaPredicted RBP23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms