RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SUSD4Q5VX71 490 aa12.62□□□□□ -0.39
CUX1-221ENST00000622516 SEC31BQ9NQW1 1179 aa12.62□□□□□ -0.39
CUX1-221ENST00000622516 GPHNQ9NQX3 736 aaPredicted RBP12.62□□□□□ -0.39
CUX1-221ENST00000622516 HELLSQ9NRZ9 838 aa12.62□□□□□ -0.39
CUX1-221ENST00000622516 IL6STP40189 918 aaPredicted RBP12.62□□□□□ -0.39
CUX1-221ENST00000622516 APOBRQ0VD83 1088 aa12.62□□□□□ -0.39
CUX1-221ENST00000622516 PLA2G12BQ9BX93 195 aa12.62□□□□□ -0.39
CUX1-221ENST00000622516 PALLDQ8WX93 1383 aa12.61□□□□□ -0.39
CUX1-221ENST00000622516 COL16A1Q07092 1604 aaPredicted RBP12.61□□□□□ -0.39
CUX1-221ENST00000622516 LOC102724428A0A0B4J2F2 783 aa12.61□□□□□ -0.39
CUX1-221ENST00000622516 SIK1P57059 783 aa12.61□□□□□ -0.39
CUX1-221ENST00000622516 KRT32Q14532 448 aa12.61□□□□□ -0.39
CUX1-221ENST00000622516 ANKRD1Q15327 319 aa12.61□□□□□ -0.39
CUX1-221ENST00000622516 TFIP11Q9UBB9 837 aaKnown RBP12.61□□□□□ -0.39
CUX1-221ENST00000622516 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.61□□□□□ -0.39
CUX1-221ENST00000622516 COL14A1Q05707 1796 aaKnown RBP12.61□□□□□ -0.39
CUX1-221ENST00000622516 FAM98CQ17RN3 349 aaKnown RBP12.61□□□□□ -0.39
CUX1-221ENST00000622516 PTF1AQ7RTS3 328 aa12.61□□□□□ -0.39
CUX1-221ENST00000622516 FAM43AQ8N2R8 423 aa12.61□□□□□ -0.39
CUX1-221ENST00000622516 NCOA5Q9HCD5 579 aaKnown RBP12.61□□□□□ -0.39
CUX1-221ENST00000622516 E7EWF7 191 aa12.6□□□□□ -0.39
CUX1-221ENST00000622516 FAM182BQ5T319 152 aa12.6□□□□□ -0.39
CUX1-221ENST00000622516 LRSAM1Q6UWE0 723 aa12.6□□□□□ -0.39
CUX1-221ENST00000622516 RAB11FIP4Q86YS3 637 aa12.6□□□□□ -0.39
CUX1-221ENST00000622516 PDE8AO60658 829 aa12.6□□□□□ -0.39
CUX1-221ENST00000622516 PHKA1P46020 1223 aa12.6□□□□□ -0.39
CUX1-221ENST00000622516 EIF5P55010 431 aaKnown RBP12.6□□□□□ -0.39
CUX1-221ENST00000622516 SCRN1Q12765 414 aa12.6□□□□□ -0.39
CUX1-221ENST00000622516 TRIM44Q96DX7 344 aaPredicted RBP12.6□□□□□ -0.39
CUX1-221ENST00000622516 RIC1Q4ADV7 1423 aa12.6□□□□□ -0.39
CUX1-221ENST00000622516 FOXP2O15409 715 aa12.6□□□□□ -0.39
CUX1-221ENST00000622516 IDH1O75874 414 aaKnown RBP12.6□□□□□ -0.39
CUX1-221ENST00000622516 ZNF34Q8IZ26 560 aa12.6□□□□□ -0.39
CUX1-221ENST00000622516 CCDC87Q9NVE4 849 aa12.6□□□□□ -0.39
CUX1-221ENST00000622516 PDE8BO95263 885 aa12.59□□□□□ -0.39
CUX1-221ENST00000622516 DHX32Q7L7V1 743 aaKnown RBP12.59□□□□□ -0.39
CUX1-221ENST00000622516 GTF3C6Q969F1 213 aa12.59□□□□□ -0.39
CUX1-221ENST00000622516 DENND2AQ9ULE3 1009 aa12.59□□□□□ -0.39
CUX1-221ENST00000622516 CDHR2Q9BYE9 1310 aa12.59□□□□□ -0.39
CUX1-221ENST00000622516 FGAP02671 866 aa12.59□□□□□ -0.39
CUX1-221ENST00000622516 C8orf37Q96NL8 207 aa12.59□□□□□ -0.39
CUX1-221ENST00000622516 DSCC1Q9BVC3 393 aa12.59□□□□□ -0.39
CUX1-221ENST00000622516 NIP7Q9Y221 180 aaKnown RBP eCLIP12.59□□□□□ -0.392e-10■■■■■ 60.1
CUX1-221ENST00000622516 NUP98P52948 1817 aa12.58□□□□□ -0.39
CUX1-221ENST00000622516 SLC9C2Q5TAH2 1124 aa12.58□□□□□ -0.4
CUX1-221ENST00000622516 ATP6V1DQ9Y5K8 247 aa12.58□□□□□ -0.4
CUX1-221ENST00000622516 WTIPA6NIX2 430 aaPredicted RBP12.58□□□□□ -0.4
CUX1-221ENST00000622516 ERVV-1B6SEH8 477 aa12.58□□□□□ -0.4
CUX1-221ENST00000622516 CCDC102BQ68D86 513 aa12.58□□□□□ -0.4
CUX1-221ENST00000622516 BICDL1Q6ZP65 573 aa12.58□□□□□ -0.4
CUX1-221ENST00000622516 VGLL2Q8N8G2 317 aa12.58□□□□□ -0.4
CUX1-221ENST00000622516 ANP32BQ92688 251 aaKnown RBP12.58□□□□□ -0.4
CUX1-221ENST00000622516 PIH1D3Q9NQM4 214 aaKnown RBP12.58□□□□□ -0.4
CUX1-221ENST00000622516 RFX7Q2KHR2 1363 aa12.58□□□□□ -0.4
CUX1-221ENST00000622516 SLIT2O94813 1529 aa12.58□□□□□ -0.4
CUX1-221ENST00000622516 DOT1LQ8TEK3 1739 aa12.58□□□□□ -0.4
CUX1-221ENST00000622516 GPAA1O43292 621 aa12.57□□□□□ -0.4
CUX1-221ENST00000622516 CEBPZQ03701 1054 aaKnown RBP12.57□□□□□ -0.4
CUX1-221ENST00000622516 IQSEC3Q9UPP2 1182 aaPredicted RBP12.57□□□□□ -0.4
CUX1-221ENST00000622516 LRP6O75581 1613 aa12.57□□□□□ -0.4
CUX1-221ENST00000622516 APPP05067 770 aa12.57□□□□□ -0.4
CUX1-221ENST00000622516 GUCY1B3Q02153 619 aa12.57□□□□□ -0.4
CUX1-221ENST00000622516 TTC6Q86TZ1 520 aa12.57□□□□□ -0.4
CUX1-221ENST00000622516 NKX2-3Q8TAU0 364 aa12.57□□□□□ -0.4
CUX1-221ENST00000622516 MPHOSPH8Q99549 860 aa12.57□□□□□ -0.4
CUX1-221ENST00000622516 SPATA31A5Q5VU36 1347 aa12.57□□□□□ -0.4
CUX1-221ENST00000622516 SPATA31A7Q8IWB4 1347 aa12.57□□□□□ -0.4
CUX1-221ENST00000622516 UBE2HP62256 183 aa12.57□□□□□ -0.4
CUX1-221ENST00000622516 GIMAP6Q6P9H5 292 aa12.57□□□□□ -0.4
CUX1-221ENST00000622516 ALDH8A1Q9H2A2 487 aaPredicted RBP12.57□□□□□ -0.4
CUX1-221ENST00000622516 FBXO3Q9UK99 471 aa12.57□□□□□ -0.4
CUX1-221ENST00000622516 CAMTA2O94983 1202 aa12.56□□□□□ -0.4
CUX1-221ENST00000622516 EXOSC10Q01780 885 aaKnown RBP12.56□□□□□ -0.4
CUX1-221ENST00000622516 MPNDQ8N594 471 aa12.56□□□□□ -0.4
CUX1-221ENST00000622516 UTP14AQ9BVJ6 771 aaKnown RBP12.56□□□□□ -0.4
CUX1-221ENST00000622516 WWC3Q9ULE0 1092 aa12.56□□□□□ -0.4
CUX1-221ENST00000622516 MYH14Q7Z406 1995 aaKnown RBP12.56□□□□□ -0.4
CUX1-221ENST00000622516 CTDNEP1O95476 244 aa12.56□□□□□ -0.4
CUX1-221ENST00000622516 CCDC24Q8N4L8 307 aa12.56□□□□□ -0.4
CUX1-221ENST00000622516 FAM184AQ8NB25 1140 aa12.56□□□□□ -0.4
CUX1-221ENST00000622516 TMEM87AQ8NBN3 555 aa12.56□□□□□ -0.4
CUX1-221ENST00000622516 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.56□□□□□ -0.4
CUX1-221ENST00000622516 APPBP2Q92624 585 aa12.56□□□□□ -0.4
CUX1-221ENST00000622516 SYAP1Q96A49 352 aaPredicted RBP12.56□□□□□ -0.4
CUX1-221ENST00000622516 NGLY1Q96IV0 654 aa12.56□□□□□ -0.4
CUX1-221ENST00000622516 INCENPQ9NQS7 918 aa12.56□□□□□ -0.4
CUX1-221ENST00000622516 H3BQV1 296 aa12.55□□□□□ -0.4
CUX1-221ENST00000622516 PDCP20941 246 aa12.55□□□□□ -0.4
CUX1-221ENST00000622516 IFFO2Q5TF58 517 aa12.55□□□□□ -0.4
CUX1-221ENST00000622516 STK11IPQ8N1F8 1099 aa12.55□□□□□ -0.4
CUX1-221ENST00000622516 TSPY26PQ9H489 355 aa12.55□□□□□ -0.4
CUX1-221ENST00000622516 MYO5AQ9Y4I1 1855 aaKnown RBP12.55□□□□□ -0.4
CUX1-221ENST00000622516 CCDC173Q0VFZ6 552 aa12.55□□□□□ -0.4
CUX1-221ENST00000622516 CAMK4Q16566 473 aa12.55□□□□□ -0.4
CUX1-221ENST00000622516 CDCA7Q9BWT1 371 aaPredicted RBP12.55□□□□□ -0.4
CUX1-221ENST00000622516 ZNF532Q9HCE3 1301 aa12.55□□□□□ -0.4
CUX1-221ENST00000622516 KDM4AO75164 1064 aa12.54□□□□□ -0.4
CUX1-221ENST00000622516 BCAMP50895 628 aa12.54□□□□□ -0.4
CUX1-221ENST00000622516 KRT85P78386 507 aa12.54□□□□□ -0.4
CUX1-221ENST00000622516 FTOQ9C0B1 505 aaKnown RBP eCLIP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms