RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ZNF609O15014 1411 aa24.37■■□□□ 1.49
UPF3A-211ENST00000618700 SBF1O95248 1867 aa24.37■■□□□ 1.49
UPF3A-211ENST00000618700 C6orf229H3BNL8 230 aa24.37■■□□□ 1.49
UPF3A-211ENST00000618700 RAB11FIP3O75154 756 aa24.37■■□□□ 1.49
UPF3A-211ENST00000618700 PUM3Q15397 648 aaKnown RBP24.37■■□□□ 1.49
UPF3A-211ENST00000618700 GPR101Q96P66 508 aaPredicted RBP24.37■■□□□ 1.49
UPF3A-211ENST00000618700 ZNF277Q9NRM2 450 aaPredicted RBP24.37■■□□□ 1.49
UPF3A-211ENST00000618700 ARAP2Q8WZ64 1704 aa24.37■■□□□ 1.49
UPF3A-211ENST00000618700 MED23Q9ULK4 1368 aa24.37■■□□□ 1.49
UPF3A-211ENST00000618700 IGHDP01880 384 aa24.36■■□□□ 1.49
UPF3A-211ENST00000618700 KCNJ4P48050 445 aa24.36■■□□□ 1.49
UPF3A-211ENST00000618700 C15orf52Q6ZUT6 534 aaKnown RBP24.36■■□□□ 1.49
UPF3A-211ENST00000618700 VPS33BQ9H267 617 aa24.36■■□□□ 1.49
UPF3A-211ENST00000618700 RWDD1Q9H446 243 aaPredicted RBP24.36■■□□□ 1.49
UPF3A-211ENST00000618700 SSUH2Q9Y2M2 353 aa24.36■■□□□ 1.49
UPF3A-211ENST00000618700 COL4A5P29400 1685 aa24.36■■□□□ 1.49
UPF3A-211ENST00000618700 KLRK1P26718 216 aa24.35■■□□□ 1.49
UPF3A-211ENST00000618700 KIAA2012Q0VF49 1180 aa24.35■■□□□ 1.49
UPF3A-211ENST00000618700 ERICH6BQ5W0A0 696 aa24.35■■□□□ 1.49
UPF3A-211ENST00000618700 EYA3Q99504 573 aa24.35■■□□□ 1.49
UPF3A-211ENST00000618700 GPR108Q9NPR9 543 aa24.35■■□□□ 1.49
UPF3A-211ENST00000618700 LMNB1P20700 586 aa24.34■■□□□ 1.49
UPF3A-211ENST00000618700 IARSP41252 1262 aaKnown RBP24.34■■□□□ 1.49
UPF3A-211ENST00000618700 ATP2B3Q16720 1220 aa24.34■■□□□ 1.49
UPF3A-211ENST00000618700 WASHC4Q2M389 1173 aa24.34■■□□□ 1.49
UPF3A-211ENST00000618700 RHPN1Q8TCX5 695 aa24.34■■□□□ 1.49
UPF3A-211ENST00000618700 KIF1BPQ96EK5 621 aa24.34■■□□□ 1.49
UPF3A-211ENST00000618700 AOC3Q16853 763 aa24.33■■□□□ 1.49
UPF3A-211ENST00000618700 LPIN2Q92539 896 aa24.33■■□□□ 1.49
UPF3A-211ENST00000618700 AKAP2Q9Y2D5 859 aa24.33■■□□□ 1.49
UPF3A-211ENST00000618700 DICER1Q9UPY3 1922 aaKnown RBP24.32■■□□□ 1.48
UPF3A-211ENST00000618700 SPDYE4A6NLX3 237 aa24.32■■□□□ 1.48
UPF3A-211ENST00000618700 PPIP5K2O43314 1243 aa24.32■■□□□ 1.48
UPF3A-211ENST00000618700 TXNRD3Q86VQ6 643 aa24.32■■□□□ 1.48
UPF3A-211ENST00000618700 SMC5Q8IY18 1101 aa24.32■■□□□ 1.48
UPF3A-211ENST00000618700 GCC1Q96CN9 775 aa24.32■■□□□ 1.48
UPF3A-211ENST00000618700 CCDC88AQ3V6T2 1871 aa24.32■■□□□ 1.48
UPF3A-211ENST00000618700 APBB1O00213 710 aa24.31■■□□□ 1.48
UPF3A-211ENST00000618700 SLC5A1P13866 664 aa24.31■■□□□ 1.48
UPF3A-211ENST00000618700 TNNI3KQ59H18 835 aa24.31■■□□□ 1.48
UPF3A-211ENST00000618700 ZC3H12CQ9C0D7 883 aaKnown RBP24.31■■□□□ 1.48
UPF3A-211ENST00000618700 FPGT-TNNI3KV9GXZ4 949 aa24.31■■□□□ 1.48
UPF3A-211ENST00000618700 TIAM2Q8IVF5 1701 aa24.3■■□□□ 1.48
UPF3A-211ENST00000618700 A0A1B0GUL7 405 aa24.3■■□□□ 1.48
UPF3A-211ENST00000618700 IFIT1P09914 478 aaKnown RBP24.3■■□□□ 1.48
UPF3A-211ENST00000618700 LARGE2Q8N3Y3 721 aa24.3■■□□□ 1.48
UPF3A-211ENST00000618700 LRRCC1Q9C099 1032 aa24.3■■□□□ 1.48
UPF3A-211ENST00000618700 RIMBP2O15034 1052 aa24.29■■□□□ 1.48
UPF3A-211ENST00000618700 IL1RAPL2Q9NP60 686 aa24.29■■□□□ 1.48
UPF3A-211ENST00000618700 TIMM10P62072 90 aa24.28■■□□□ 1.48
UPF3A-211ENST00000618700 C9orf131Q5VYM1 1079 aa24.28■■□□□ 1.48
UPF3A-211ENST00000618700 EAF2Q96CJ1 260 aaPredicted RBP24.28■■□□□ 1.48
UPF3A-211ENST00000618700 RNF181Q9P0P0 153 aa24.28■■□□□ 1.48
UPF3A-211ENST00000618700 ADORA1P30542 326 aa24.27■■□□□ 1.48
UPF3A-211ENST00000618700 FAM84BQ96KN1 310 aaPredicted RBP24.27■■□□□ 1.48
UPF3A-211ENST00000618700 GYG1P46976 350 aa24.26■■□□□ 1.47
UPF3A-211ENST00000618700 FBXO33Q7Z6M2 555 aa24.26■■□□□ 1.47
UPF3A-211ENST00000618700 NIM1KQ8IY84 436 aa24.26■■□□□ 1.47
UPF3A-211ENST00000618700 CLASRPQ8N2M8 674 aaKnown RBP24.26■■□□□ 1.47
UPF3A-211ENST00000618700 XAGE2Q96GT9 111 aa24.26■■□□□ 1.47
UPF3A-211ENST00000618700 COA1Q9GZY4 146 aa24.26■■□□□ 1.47
UPF3A-211ENST00000618700 KDM2BQ8NHM5 1336 aa24.26■■□□□ 1.47
UPF3A-211ENST00000618700 SMARCA5O60264 1052 aaPredicted RBP24.25■■□□□ 1.47
UPF3A-211ENST00000618700 ZNF804AQ7Z570 1209 aa24.25■■□□□ 1.47
UPF3A-211ENST00000618700 REM2Q8IYK8 340 aaPredicted RBP24.25■■□□□ 1.47
UPF3A-211ENST00000618700 DBNDD1Q9H9R9 158 aa24.25■■□□□ 1.47
UPF3A-211ENST00000618700 ECE2O60344 883 aa24.24■■□□□ 1.47
UPF3A-211ENST00000618700 HIBADHP31937 336 aaKnown RBP24.24■■□□□ 1.47
UPF3A-211ENST00000618700 DOK7Q18PE1 504 aa24.24■■□□□ 1.47
UPF3A-211ENST00000618700 CAVIN4Q5BKX8 364 aa24.24■■□□□ 1.47
UPF3A-211ENST00000618700 AACSQ86V21 672 aa24.24■■□□□ 1.47
UPF3A-211ENST00000618700 JDP2Q8WYK2 163 aa24.24■■□□□ 1.47
UPF3A-211ENST00000618700 NEUROD6Q96NK8 337 aa24.24■■□□□ 1.47
UPF3A-211ENST00000618700 DBNDD2Q9BQY9 259 aa24.24■■□□□ 1.47
UPF3A-211ENST00000618700 TLR7Q9NYK1 1049 aaKnown RBP24.24■■□□□ 1.47
UPF3A-211ENST00000618700 DBNLQ9UJU6 430 aaKnown RBP24.24■■□□□ 1.47
UPF3A-211ENST00000618700 YDJCA8MPS7 323 aa24.23■■□□□ 1.47
UPF3A-211ENST00000618700 FZD9O00144 591 aa24.23■■□□□ 1.47
UPF3A-211ENST00000618700 IL1R1P14778 569 aa24.23■■□□□ 1.47
UPF3A-211ENST00000618700 BCAMP50895 628 aa24.23■■□□□ 1.47
UPF3A-211ENST00000618700 ZNF784Q8NCA9 323 aaPredicted RBP24.23■■□□□ 1.47
UPF3A-211ENST00000618700 CD209Q9NNX6 404 aa24.23■■□□□ 1.47
UPF3A-211ENST00000618700 ZNRF3Q9ULT6 936 aa24.23■■□□□ 1.47
UPF3A-211ENST00000618700 ZC3H4Q9UPT8 1303 aaKnown RBP24.23■■□□□ 1.47
UPF3A-211ENST00000618700 SCN9AQ15858 1988 aa24.23■■□□□ 1.47
UPF3A-211ENST00000618700 ANKRD45Q5TZF3 282 aa24.22■■□□□ 1.47
UPF3A-211ENST00000618700 PODNQ7Z5L7 613 aa24.22■■□□□ 1.47
UPF3A-211ENST00000618700 CCDC8Q9H0W5 538 aaPredicted RBP24.22■■□□□ 1.47
UPF3A-211ENST00000618700 PPP4R2Q9NY27 417 aa24.22■■□□□ 1.47
UPF3A-211ENST00000618700 ZNF646O15015 1829 aaPredicted RBP24.21■■□□□ 1.47
UPF3A-211ENST00000618700 PSME4Q14997 1843 aa24.21■■□□□ 1.47
UPF3A-211ENST00000618700 PHKA1P46020 1223 aa24.21■■□□□ 1.47
UPF3A-211ENST00000618700 NUCB1Q02818 461 aa24.21■■□□□ 1.47
UPF3A-211ENST00000618700 CCDC102BQ68D86 513 aa24.21■■□□□ 1.47
UPF3A-211ENST00000618700 TDRD7Q8NHU6 1098 aaKnown RBP24.21■■□□□ 1.47
UPF3A-211ENST00000618700 CCDC136Q96JN2 1154 aa24.21■■□□□ 1.47
UPF3A-211ENST00000618700 G3V3G9 751 aa24.2■■□□□ 1.46
UPF3A-211ENST00000618700 DCAF8Q5TAQ9 597 aa24.2■■□□□ 1.46
UPF3A-211ENST00000618700 VPS37DQ86XT2 251 aa24.2■■□□□ 1.46
UPF3A-211ENST00000618700 COL1A1P02452 1464 aaPredicted RBP24.19■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms