RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 ZC3H12CQ9C0D7 883 aaKnown RBP18.04■□□□□ 0.48
CD48-203ENST00000613788 ZNF609O15014 1411 aa18.04■□□□□ 0.48
CD48-203ENST00000613788 WTIPA6NIX2 430 aaPredicted RBP18.03■□□□□ 0.48
CD48-203ENST00000613788 WASHC4Q2M389 1173 aa18.03■□□□□ 0.48
CD48-203ENST00000613788 VPS33BQ9H267 617 aa18.03■□□□□ 0.48
CD48-203ENST00000613788 SNED1Q8TER0 1413 aa18.03■□□□□ 0.48
CD48-203ENST00000613788 GPR162Q16538 588 aa18.03■□□□□ 0.48
CD48-203ENST00000613788 CCDC158Q5M9N0 1113 aa18.03■□□□□ 0.48
CD48-203ENST00000613788 C16orf71Q8IYS4 520 aaPredicted RBP18.03■□□□□ 0.48
CD48-203ENST00000613788 GPATCH3Q96I76 525 aa18.03■□□□□ 0.48
CD48-203ENST00000613788 TAOK3Q9H2K8 898 aa18.03■□□□□ 0.48
CD48-203ENST00000613788 ARHGAP27Q6ZUM4 889 aa18.02■□□□□ 0.47
CD48-203ENST00000613788 VPS37DQ86XT2 251 aa18.02■□□□□ 0.47
CD48-203ENST00000613788 DBNDD2Q9BQY9 259 aa18.02■□□□□ 0.47
CD48-203ENST00000613788 DBNLQ9UJU6 430 aaKnown RBP18.02■□□□□ 0.47
CD48-203ENST00000613788 MED23Q9ULK4 1368 aa18.02■□□□□ 0.47
CD48-203ENST00000613788 LTBP3Q9NS15 1303 aa18.01■□□□□ 0.47
CD48-203ENST00000613788 ADORA1P30542 326 aa18.01■□□□□ 0.47
CD48-203ENST00000613788 ZNF804AQ7Z570 1209 aa18.01■□□□□ 0.47
CD48-203ENST00000613788 FAM84BQ96KN1 310 aaPredicted RBP18.01■□□□□ 0.47
CD48-203ENST00000613788 G3V3G9 751 aa18■□□□□ 0.47
CD48-203ENST00000613788 RIMBP2O15034 1052 aa18■□□□□ 0.47
CD48-203ENST00000613788 GRIN3BO60391 1043 aa18■□□□□ 0.47
CD48-203ENST00000613788 YBX3P16989 372 aaKnown RBP eCLIP18■□□□□ 0.47
CD48-203ENST00000613788 HIBADHP31937 336 aaKnown RBP18■□□□□ 0.47
CD48-203ENST00000613788 DCAF8Q5TAQ9 597 aa18■□□□□ 0.47
CD48-203ENST00000613788 FBXO33Q7Z6M2 555 aa18■□□□□ 0.47
CD48-203ENST00000613788 GPR101Q96P66 508 aaPredicted RBP18■□□□□ 0.47
CD48-203ENST00000613788 GNL3LQ9NVN8 582 aaKnown RBP18■□□□□ 0.47
CD48-203ENST00000613788 TLR7Q9NYK1 1049 aaKnown RBP18■□□□□ 0.47
CD48-203ENST00000613788 IRS2Q9Y4H2 1338 aa18■□□□□ 0.47
CD48-203ENST00000613788 ARFGEF1Q9Y6D6 1849 aa18■□□□□ 0.47
CD48-203ENST00000613788 NFKBIEO00221 500 aa17.99■□□□□ 0.47
CD48-203ENST00000613788 MX1P20591 662 aa17.99■□□□□ 0.47
CD48-203ENST00000613788 GYG1P46976 350 aa17.99■□□□□ 0.47
CD48-203ENST00000613788 BCAMP50895 628 aa17.99■□□□□ 0.47
CD48-203ENST00000613788 KIAA2012Q0VF49 1180 aa17.99■□□□□ 0.47
CD48-203ENST00000613788 CCDC102BQ68D86 513 aa17.99■□□□□ 0.47
CD48-203ENST00000613788 TXNRD3Q86VQ6 643 aa17.99■□□□□ 0.47
CD48-203ENST00000613788 ECHDC1Q9NTX5 307 aa17.99■□□□□ 0.47
CD48-203ENST00000613788 TTC41PQ6P2S7 1318 aa17.99■□□□□ 0.47
CD48-203ENST00000613788 LTBP1Q14766 1721 aa17.99■□□□□ 0.47
CD48-203ENST00000613788 A0A1B0GUL6 1792 aa17.99■□□□□ 0.47
CD48-203ENST00000613788 PPIP5K2O43314 1243 aa17.98■□□□□ 0.47
CD48-203ENST00000613788 UQCRFS1P1P0C7P4 283 aa17.98■□□□□ 0.47
CD48-203ENST00000613788 KLRK1P26718 216 aa17.98■□□□□ 0.47
CD48-203ENST00000613788 PDE4AP27815 886 aa17.98■□□□□ 0.47
CD48-203ENST00000613788 TTC39AQ5SRH9 613 aa17.98■□□□□ 0.47
CD48-203ENST00000613788 OTUD7AQ8TE49 926 aaPredicted RBP17.98■□□□□ 0.47
CD48-203ENST00000613788 COA1Q9GZY4 146 aa17.98■□□□□ 0.47
CD48-203ENST00000613788 ZNF277Q9NRM2 450 aaPredicted RBP17.98■□□□□ 0.47
CD48-203ENST00000613788 STAP2Q9UGK3 403 aa17.98■□□□□ 0.47
CD48-203ENST00000613788 DUOX1Q9NRD9 1551 aa17.98■□□□□ 0.47
CD48-203ENST00000613788 IARSP41252 1262 aaKnown RBP17.98■□□□□ 0.47
CD48-203ENST00000613788 AOC3Q16853 763 aa17.98■□□□□ 0.47
CD48-203ENST00000613788 PLEKHM2Q8IWE5 1019 aa17.98■□□□□ 0.47
CD48-203ENST00000613788 ZNF512BQ96KM6 892 aaPredicted RBP17.98■□□□□ 0.47
CD48-203ENST00000613788 SALL3Q9BXA9 1300 aa17.97■□□□□ 0.47
CD48-203ENST00000613788 GOLGB1Q14789 3259 aaKnown RBP17.97■□□□□ 0.47
CD48-203ENST00000613788 DCAF8L1A6NGE4 600 aa17.97■□□□□ 0.47
CD48-203ENST00000613788 ERC2O15083 957 aa17.97■□□□□ 0.47
CD48-203ENST00000613788 PHKA1P46020 1223 aa17.97■□□□□ 0.47
CD48-203ENST00000613788 PDE1AP54750 535 aa17.97■□□□□ 0.47
CD48-203ENST00000613788 LARGE2Q8N3Y3 721 aa17.97■□□□□ 0.47
CD48-203ENST00000613788 CD209Q9NNX6 404 aa17.97■□□□□ 0.47
CD48-203ENST00000613788 FRAT2O75474 233 aaPredicted RBP17.96■□□□□ 0.47
CD48-203ENST00000613788 ATP5JP18859 108 aa17.96■□□□□ 0.47
CD48-203ENST00000613788 RASSF7Q02833 373 aa17.96■□□□□ 0.47
CD48-203ENST00000613788 PODNQ7Z5L7 613 aa17.96■□□□□ 0.47
CD48-203ENST00000613788 OSBPL3Q9H4L5 887 aa17.96■□□□□ 0.47
CD48-203ENST00000613788 SEMA3EO15041 775 aa17.95■□□□□ 0.46
CD48-203ENST00000613788 ZBTB22O15209 634 aa17.95■□□□□ 0.46
CD48-203ENST00000613788 GLRX3O76003 335 aaKnown RBP17.95■□□□□ 0.46
CD48-203ENST00000613788 ARID4AP29374 1257 aaPredicted RBP17.95■□□□□ 0.46
CD48-203ENST00000613788 DOK7Q18PE1 504 aa17.95■□□□□ 0.46
CD48-203ENST00000613788 TDRD7Q8NHU6 1098 aaKnown RBP17.95■□□□□ 0.46
CD48-203ENST00000613788 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.95■□□□□ 0.46
CD48-203ENST00000613788 JDP2Q8WYK2 163 aa17.95■□□□□ 0.46
CD48-203ENST00000613788 AOX1Q06278 1338 aa17.95■□□□□ 0.46
CD48-203ENST00000613788 FER1L6Q2WGJ9 1857 aa17.95■□□□□ 0.46
CD48-203ENST00000613788 IL1R1P14778 569 aa17.94■□□□□ 0.46
CD48-203ENST00000613788 LMNB1P20700 586 aa17.94■□□□□ 0.46
CD48-203ENST00000613788 DENND2AQ9ULE3 1009 aa17.94■□□□□ 0.46
CD48-203ENST00000613788 RGS3P49796 1198 aa17.93■□□□□ 0.46
CD48-203ENST00000613788 NIM1KQ8IY84 436 aa17.93■□□□□ 0.46
CD48-203ENST00000613788 DBNDD1Q9H9R9 158 aa17.93■□□□□ 0.46
CD48-203ENST00000613788 ARAP2Q8WZ64 1704 aa17.93■□□□□ 0.46
CD48-203ENST00000613788 ECE2O60344 883 aa17.93■□□□□ 0.46
CD48-203ENST00000613788 TSHZ3Q63HK5 1081 aa17.93■□□□□ 0.46
CD48-203ENST00000613788 PI4K2BQ8TCG2 481 aa17.93■□□□□ 0.46
CD48-203ENST00000613788 BOLA2Q9H3K6 86 aa17.93■□□□□ 0.46
CD48-203ENST00000613788 IQSEC3Q9UPP2 1182 aaPredicted RBP17.93■□□□□ 0.46
CD48-203ENST00000613788 RASGRF1Q13972 1273 aa17.92■□□□□ 0.46
CD48-203ENST00000613788 SKAP1Q86WV1 359 aa17.92■□□□□ 0.46
CD48-203ENST00000613788 SPATA5Q8NB90 893 aa17.92■□□□□ 0.46
CD48-203ENST00000613788 ZNRF3Q9ULT6 936 aa17.92■□□□□ 0.46
CD48-203ENST00000613788 MCAMP43121 646 aa17.91■□□□□ 0.46
CD48-203ENST00000613788 HAUS7Q99871 368 aa17.91■□□□□ 0.46
CD48-203ENST00000613788 HMG20BQ9P0W2 317 aa17.91■□□□□ 0.46
CD48-203ENST00000613788 PDS5AQ29RF7 1337 aaKnown RBP17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms