RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 CRBNQ96SW2 442 aa20.53■□□□□ 0.88
CCDC28A-202ENST00000611852 COA1Q9GZY4 146 aa20.53■□□□□ 0.88
CCDC28A-202ENST00000611852 KCNQ5Q9NR82 932 aa20.53■□□□□ 0.88
CCDC28A-202ENST00000611852 CEP126Q9P2H0 1117 aa20.53■□□□□ 0.88
CCDC28A-202ENST00000611852 RAD17O75943 681 aa20.53■□□□□ 0.88
CCDC28A-202ENST00000611852 FGFR2P21802 821 aa20.53■□□□□ 0.88
CCDC28A-202ENST00000611852 PUM3Q15397 648 aaKnown RBP20.53■□□□□ 0.88
CCDC28A-202ENST00000611852 PODNQ7Z5L7 613 aa20.53■□□□□ 0.88
CCDC28A-202ENST00000611852 SIRT2Q8IXJ6 389 aa20.53■□□□□ 0.88
CCDC28A-202ENST00000611852 NMRK2Q9NPI5 230 aa20.53■□□□□ 0.88
CCDC28A-202ENST00000611852 SCN9AQ15858 1988 aa20.52■□□□□ 0.88
CCDC28A-202ENST00000611852 G3BP1Q13283 466 aaKnown RBP eCLIP20.52■□□□□ 0.87
CCDC28A-202ENST00000611852 CIAPIN1Q6FI81 312 aa20.52■□□□□ 0.87
CCDC28A-202ENST00000611852 L3MBTL3Q96JM7 780 aaPredicted RBP20.52■□□□□ 0.87
CCDC28A-202ENST00000611852 NOP58Q9Y2X3 529 aaKnown RBP20.52■□□□□ 0.87
CCDC28A-202ENST00000611852 GJA3Q9Y6H8 435 aa20.52■□□□□ 0.87
CCDC28A-202ENST00000611852 WDR90Q96KV7 1748 aa20.52■□□□□ 0.87
CCDC28A-202ENST00000611852 SURF6O75683 361 aaKnown RBP20.51■□□□□ 0.87
CCDC28A-202ENST00000611852 TNIP1Q15025 636 aa20.51■□□□□ 0.87
CCDC28A-202ENST00000611852 POTECB2RU33 542 aa20.5■□□□□ 0.87
CCDC28A-202ENST00000611852 TFCP2Q12800 502 aa20.5■□□□□ 0.87
CCDC28A-202ENST00000611852 ZNF804AQ7Z570 1209 aa20.5■□□□□ 0.87
CCDC28A-202ENST00000611852 LPIN2Q92539 896 aa20.5■□□□□ 0.87
CCDC28A-202ENST00000611852 RRAGCQ9HB90 399 aa20.5■□□□□ 0.87
CCDC28A-202ENST00000611852 CD209Q9NNX6 404 aa20.5■□□□□ 0.87
CCDC28A-202ENST00000611852 PSMD14O00487 310 aa20.49■□□□□ 0.87
CCDC28A-202ENST00000611852 GYG1P46976 350 aa20.49■□□□□ 0.87
CCDC28A-202ENST00000611852 FAM84BQ96KN1 310 aaPredicted RBP20.49■□□□□ 0.87
CCDC28A-202ENST00000611852 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.49■□□□□ 0.87
CCDC28A-202ENST00000611852 HMMRO75330 724 aa20.48■□□□□ 0.87
CCDC28A-202ENST00000611852 SASH1O94885 1247 aa20.48■□□□□ 0.87
CCDC28A-202ENST00000611852 IFIT1P09914 478 aaKnown RBP20.48■□□□□ 0.87
CCDC28A-202ENST00000611852 ATP2B3Q16720 1220 aa20.48■□□□□ 0.87
CCDC28A-202ENST00000611852 PSME4Q14997 1843 aa20.48■□□□□ 0.87
CCDC28A-202ENST00000611852 SLC5A1P13866 664 aa20.48■□□□□ 0.87
CCDC28A-202ENST00000611852 IL1R1P14778 569 aa20.48■□□□□ 0.87
CCDC28A-202ENST00000611852 VEGFAP15692 232 aaPredicted RBP20.48■□□□□ 0.87
CCDC28A-202ENST00000611852 KIF3CO14782 793 aa20.47■□□□□ 0.87
CCDC28A-202ENST00000611852 VIL1P09327 827 aaKnown RBP20.47■□□□□ 0.87
CCDC28A-202ENST00000611852 HIBADHP31937 336 aaKnown RBP20.47■□□□□ 0.87
CCDC28A-202ENST00000611852 SCNN1DP51172 638 aa20.47■□□□□ 0.87
CCDC28A-202ENST00000611852 OS9Q13438 667 aaPredicted RBP20.47■□□□□ 0.87
CCDC28A-202ENST00000611852 CAVIN4Q5BKX8 364 aa20.47■□□□□ 0.87
CCDC28A-202ENST00000611852 FBXO33Q7Z6M2 555 aa20.47■□□□□ 0.87
CCDC28A-202ENST00000611852 EXOC6BQ9Y2D4 811 aa20.47■□□□□ 0.87
CCDC28A-202ENST00000611852 SCN4AP35499 1836 aa20.46■□□□□ 0.87
CCDC28A-202ENST00000611852 USP17L3A6NCW0 530 aa20.46■□□□□ 0.87
CCDC28A-202ENST00000611852 USP17L4A6NCW7 530 aa20.46■□□□□ 0.87
CCDC28A-202ENST00000611852 GMPSP49915 693 aaPredicted RBP20.46■□□□□ 0.87
CCDC28A-202ENST00000611852 USP17L1Q7RTZ2 530 aa20.46■□□□□ 0.87
CCDC28A-202ENST00000611852 AKAP2Q9Y2D5 859 aa20.46■□□□□ 0.87
CCDC28A-202ENST00000611852 ZBTB12Q9Y330 459 aaPredicted RBP20.46■□□□□ 0.87
CCDC28A-202ENST00000611852 PCDHB15Q9Y5E8 787 aa20.46■□□□□ 0.87
CCDC28A-202ENST00000611852 IQCA1LA6NCM1 817 aa20.45■□□□□ 0.86
CCDC28A-202ENST00000611852 BCAMP50895 628 aa20.45■□□□□ 0.86
CCDC28A-202ENST00000611852 TIMM10P62072 90 aa20.45■□□□□ 0.86
CCDC28A-202ENST00000611852 TDRD7Q8NHU6 1098 aaKnown RBP20.45■□□□□ 0.86
CCDC28A-202ENST00000611852 ZNF646O15015 1829 aaPredicted RBP20.44■□□□□ 0.86
CCDC28A-202ENST00000611852 A0A1B0GUL7 405 aa20.44■□□□□ 0.86
CCDC28A-202ENST00000611852 STRIP1Q5VSL9 837 aa20.44■□□□□ 0.86
CCDC28A-202ENST00000611852 TTLL5Q6EMB2 1281 aa20.44■□□□□ 0.86
CCDC28A-202ENST00000611852 VPS37DQ86XT2 251 aa20.44■□□□□ 0.86
CCDC28A-202ENST00000611852 HACL1Q9UJ83 578 aa20.44■□□□□ 0.86
CCDC28A-202ENST00000611852 RPS12P25398 132 aaKnown RBP20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 GTF2IP78347 998 aa20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 HSP90AB4PQ58FF6 505 aa20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 DACT2Q5SW24 774 aa20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 RSBN1LQ6PCB5 846 aaPredicted RBP20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 EXOC6Q8TAG9 804 aa20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 GPRC5DQ9NZD1 345 aa20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 ARAP2Q8WZ64 1704 aa20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 ZNF609O15014 1411 aa20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 LMOD1P29536 600 aaPredicted RBP20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 ADORA1P30542 326 aa20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 EPS15P42566 896 aa20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 AAMPQ13685 434 aa20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 ERC1Q8IUD2 1116 aa20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 DPF2Q92785 391 aa20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 FBXW7Q969H0 707 aa20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 TAF1DQ9H5J8 278 aaPredicted RBP20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 GPR108Q9NPR9 543 aa20.43■□□□□ 0.86
CCDC28A-202ENST00000611852 AGBL3Q8NEM8 1001 aa20.42■□□□□ 0.86
CCDC28A-202ENST00000611852 GMLQ99445 158 aa20.42■□□□□ 0.86
CCDC28A-202ENST00000611852 IQSEC3Q9UPP2 1182 aaPredicted RBP20.42■□□□□ 0.86
CCDC28A-202ENST00000611852 EPHX2P34913 555 aa20.41■□□□□ 0.86
CCDC28A-202ENST00000611852 TNNI3KQ59H18 835 aa20.41■□□□□ 0.86
CCDC28A-202ENST00000611852 XAGE2Q96GT9 111 aa20.41■□□□□ 0.86
CCDC28A-202ENST00000611852 NEUROD6Q96NK8 337 aa20.41■□□□□ 0.86
CCDC28A-202ENST00000611852 MXD3Q9BW11 206 aa20.41■□□□□ 0.86
CCDC28A-202ENST00000611852 CNOT7Q9UIV1 285 aaKnown RBP20.41■□□□□ 0.86
CCDC28A-202ENST00000611852 FPGT-TNNI3KV9GXZ4 949 aa20.41■□□□□ 0.86
CCDC28A-202ENST00000611852 IRX6P78412 446 aaPredicted RBP20.4■□□□□ 0.86
CCDC28A-202ENST00000611852 RHPN1Q8TCX5 695 aa20.4■□□□□ 0.86
CCDC28A-202ENST00000611852 JAG2Q9Y219 1238 aa20.4■□□□□ 0.86
CCDC28A-202ENST00000611852 FAM205AQ6ZU69 1335 aa20.39■□□□□ 0.86
CCDC28A-202ENST00000611852 MYO3BQ8WXR4 1341 aa20.39■□□□□ 0.86
CCDC28A-202ENST00000611852 SHTN1A0MZ66 631 aa20.39■□□□□ 0.85
CCDC28A-202ENST00000611852 PHKA1P46020 1223 aa20.39■□□□□ 0.85
CCDC28A-202ENST00000611852 CCDC102BQ68D86 513 aa20.39■□□□□ 0.85
CCDC28A-202ENST00000611852 MICALL2Q8IY33 904 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 160.2 ms