RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 KCNJ4P48050 445 aa12.25□□□□□ -0.45
VRK3-224ENST00000601849 STRIP1Q5VSL9 837 aa12.25□□□□□ -0.45
VRK3-224ENST00000601849 MED23Q9ULK4 1368 aa12.25□□□□□ -0.45
VRK3-224ENST00000601849 ZNF609O15014 1411 aa12.25□□□□□ -0.45
VRK3-224ENST00000601849 PKN2Q16513 984 aaKnown RBP12.24□□□□□ -0.45
VRK3-224ENST00000601849 TWISTNBQ3B726 338 aaPredicted RBP12.24□□□□□ -0.45
VRK3-224ENST00000601849 TTLL5Q6EMB2 1281 aa12.24□□□□□ -0.45
VRK3-224ENST00000601849 ARMC9Q7Z3E5 817 aa12.24□□□□□ -0.45
VRK3-224ENST00000601849 GMLQ99445 158 aa12.24□□□□□ -0.45
VRK3-224ENST00000601849 GREM2Q9H772 168 aa12.24□□□□□ -0.45
VRK3-224ENST00000601849 NEURL1BA8MQ27 555 aa12.23□□□□□ -0.45
VRK3-224ENST00000601849 IGKV5-2P06315 115 aa12.23□□□□□ -0.45
VRK3-224ENST00000601849 CCDC27Q2M243 656 aa12.23□□□□□ -0.45
VRK3-224ENST00000601849 CTU1Q7Z7A3 348 aaKnown RBP12.23□□□□□ -0.45
VRK3-224ENST00000601849 ZNF804BA4D1E1 1349 aa12.22□□□□□ -0.45
VRK3-224ENST00000601849 ASTN2O75129 1339 aaPredicted RBP12.22□□□□□ -0.45
VRK3-224ENST00000601849 CASP8AP2Q9UKL3 1982 aa12.22□□□□□ -0.45
VRK3-224ENST00000601849 UBE2Q2LH0YL09 131 aa12.22□□□□□ -0.45
VRK3-224ENST00000601849 H7C1W4 665 aa12.22□□□□□ -0.45
VRK3-224ENST00000601849 SREBF2Q12772 1141 aa12.22□□□□□ -0.45
VRK3-224ENST00000601849 FKBP5Q13451 457 aaPredicted RBP12.22□□□□□ -0.45
VRK3-224ENST00000601849 CWF19L2Q2TBE0 894 aaKnown RBP12.22□□□□□ -0.45
VRK3-224ENST00000601849 NBPF9Q3BBW0 867 aa12.22□□□□□ -0.45
VRK3-224ENST00000601849 DACT2Q5SW24 774 aa12.22□□□□□ -0.45
VRK3-224ENST00000601849 UBE3BQ7Z3V4 1068 aa12.22□□□□□ -0.45
VRK3-224ENST00000601849 RASAL3Q86YV0 1011 aa12.22□□□□□ -0.45
VRK3-224ENST00000601849 APOBEC3FQ8IUX4 373 aaKnown RBP12.22□□□□□ -0.45
VRK3-224ENST00000601849 TSPYL6Q8N831 410 aa12.22□□□□□ -0.45
VRK3-224ENST00000601849 TSR2Q969E8 191 aaKnown RBP12.22□□□□□ -0.45
VRK3-224ENST00000601849 POLR2AP24928 1970 aaKnown RBP12.21□□□□□ -0.45
VRK3-224ENST00000601849 ANKRD18BA2A2Z9 1011 aa12.21□□□□□ -0.45
VRK3-224ENST00000601849 WNT10BO00744 389 aa12.21□□□□□ -0.45
VRK3-224ENST00000601849 MYO1BO43795 1136 aa12.21□□□□□ -0.45
VRK3-224ENST00000601849 ITGA6P23229 1130 aa12.21□□□□□ -0.45
VRK3-224ENST00000601849 GCKRQ14397 625 aa12.21□□□□□ -0.45
VRK3-224ENST00000601849 WWC1Q8IX03 1113 aa12.21□□□□□ -0.45
VRK3-224ENST00000601849 IL16Q14005 1332 aa12.2□□□□□ -0.46
VRK3-224ENST00000601849 TM4SF4P48230 202 aa12.2□□□□□ -0.46
VRK3-224ENST00000601849 INHBEP58166 350 aa12.2□□□□□ -0.46
VRK3-224ENST00000601849 GTF2IP78347 998 aa12.2□□□□□ -0.46
VRK3-224ENST00000601849 DLGAP5Q15398 846 aa12.2□□□□□ -0.46
VRK3-224ENST00000601849 NCBP3Q53F19 620 aaKnown RBP12.2□□□□□ -0.46
VRK3-224ENST00000601849 LINS1Q8NG48 757 aa12.2□□□□□ -0.46
VRK3-224ENST00000601849 DNAAF4Q8WXU2 420 aa12.2□□□□□ -0.46
VRK3-224ENST00000601849 PLA2G12BQ9BX93 195 aa12.2□□□□□ -0.46
VRK3-224ENST00000601849 AKAP11Q9UKA4 1901 aa12.19□□□□□ -0.46
VRK3-224ENST00000601849 PPP1R12BO60237 982 aaPredicted RBP12.19□□□□□ -0.46
VRK3-224ENST00000601849 ALDH1A1P00352 501 aa12.19□□□□□ -0.46
VRK3-224ENST00000601849 CSF1RP07333 972 aa12.19□□□□□ -0.46
VRK3-224ENST00000601849 FLIIQ13045 1269 aa12.19□□□□□ -0.46
VRK3-224ENST00000601849 IFIT5Q13325 482 aaKnown RBP12.19□□□□□ -0.46
VRK3-224ENST00000601849 TAF7LQ5H9L4 462 aa12.19□□□□□ -0.46
VRK3-224ENST00000601849 PRAMEF18Q5VWM3 479 aa12.19□□□□□ -0.46
VRK3-224ENST00000601849 KIAA0825Q8IV33 1275 aa12.19□□□□□ -0.46
VRK3-224ENST00000601849 CHMP3Q9Y3E7 222 aa12.19□□□□□ -0.46
VRK3-224ENST00000601849 SLC34A2O95436 690 aa12.18□□□□□ -0.46
VRK3-224ENST00000601849 TBC1D8O95759 1140 aa12.18□□□□□ -0.46
VRK3-224ENST00000601849 CHRNDQ07001 517 aa12.18□□□□□ -0.46
VRK3-224ENST00000601849 SUPT20HL1Q3ZLR7 823 aa12.18□□□□□ -0.46
VRK3-224ENST00000601849 NOM1Q5C9Z4 860 aaKnown RBP12.18□□□□□ -0.46
VRK3-224ENST00000601849 ZNF804AQ7Z570 1209 aa12.18□□□□□ -0.46
VRK3-224ENST00000601849 SLC10A4Q96EP9 437 aa12.18□□□□□ -0.46
VRK3-224ENST00000601849 MXD3Q9BW11 206 aa12.18□□□□□ -0.46
VRK3-224ENST00000601849 CD209Q9NNX6 404 aa12.18□□□□□ -0.46
VRK3-224ENST00000601849 SCAF8Q9UPN6 1271 aaKnown RBP12.18□□□□□ -0.46
VRK3-224ENST00000601849 SCN9AQ15858 1988 aa12.18□□□□□ -0.46
VRK3-224ENST00000601849 PAPPA2Q9BXP8 1791 aa12.18□□□□□ -0.46
VRK3-224ENST00000601849 COL4A1P02462 1669 aa12.17□□□□□ -0.46
VRK3-224ENST00000601849 WTIPA6NIX2 430 aaPredicted RBP12.17□□□□□ -0.46
VRK3-224ENST00000601849 SASH1O94885 1247 aa12.17□□□□□ -0.46
VRK3-224ENST00000601849 SOX10P56693 466 aa12.17□□□□□ -0.46
VRK3-224ENST00000601849 PRKG1Q13976 671 aa12.17□□□□□ -0.46
VRK3-224ENST00000601849 CCDC57Q2TAC2 916 aa12.17□□□□□ -0.46
VRK3-224ENST00000601849 OTUD7BQ6GQQ9 843 aa12.17□□□□□ -0.46
VRK3-224ENST00000601849 MOB2Q70IA6 237 aa12.17□□□□□ -0.46
VRK3-224ENST00000601849 G2E3Q7L622 706 aa12.17□□□□□ -0.46
VRK3-224ENST00000601849 WDR63Q8IWG1 891 aa12.17□□□□□ -0.46
VRK3-224ENST00000601849 ZNF296Q8WUU4 475 aaPredicted RBP12.17□□□□□ -0.46
VRK3-224ENST00000601849 ANGEL1Q9UNK9 670 aaKnown RBP12.17□□□□□ -0.46
VRK3-224ENST00000601849 PPP2R3BQ9Y5P8 575 aa12.17□□□□□ -0.46
VRK3-224ENST00000601849 MANSC4A6NHS7 340 aaPredicted RBP12.16□□□□□ -0.46
VRK3-224ENST00000601849 UNCXA6NJT0 531 aa12.16□□□□□ -0.46
VRK3-224ENST00000601849 GPR25O00155 361 aa12.16□□□□□ -0.46
VRK3-224ENST00000601849 MKRN3Q13064 507 aaKnown RBP12.16□□□□□ -0.46
VRK3-224ENST00000601849 TXNRD3Q86VQ6 643 aa12.16□□□□□ -0.46
VRK3-224ENST00000601849 DEFB129Q9H1M3 183 aa12.16□□□□□ -0.46
VRK3-224ENST00000601849 FKTNO75072 461 aa12.15□□□□□ -0.46
VRK3-224ENST00000601849 RBM5P52756 815 aaKnown RBP eCLIP12.15□□□□□ -0.46
VRK3-224ENST00000601849 FKBP1AP62942 108 aaKnown RBP12.15□□□□□ -0.46
VRK3-224ENST00000601849 PTPN12Q05209 780 aaKnown RBP12.15□□□□□ -0.46
VRK3-224ENST00000601849 FBXO46Q6PJ61 603 aaPredicted RBP12.15□□□□□ -0.46
VRK3-224ENST00000601849 LDHAL6AQ6ZMR3 332 aa12.15□□□□□ -0.46
VRK3-224ENST00000601849 MTMR14Q8NCE2 650 aa12.15□□□□□ -0.46
VRK3-224ENST00000601849 CNNM1Q9NRU3 951 aa12.15□□□□□ -0.46
VRK3-224ENST00000601849 C9orf78Q9NZ63 289 aaPredicted RBP12.15□□□□□ -0.46
VRK3-224ENST00000601849 HPS5Q9UPZ3 1129 aa12.15□□□□□ -0.46
VRK3-224ENST00000601849 PSME4Q14997 1843 aa12.14□□□□□ -0.47
VRK3-224ENST00000601849 ANP32CO43423 234 aa12.14□□□□□ -0.47
VRK3-224ENST00000601849 VAMP4O75379 141 aa12.14□□□□□ -0.47
VRK3-224ENST00000601849 TAF5LO75529 589 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms