RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 LDHDQ86WU2 507 aa21.04■□□□□ 0.96
TRIM28-215ENST00000601150 ITPRIPQ8IWB1 547 aa21.04■□□□□ 0.96
TRIM28-215ENST00000601150 VIL1P09327 827 aaKnown RBP21.03■□□□□ 0.96
TRIM28-215ENST00000601150 RPS12P25398 132 aaKnown RBP21.03■□□□□ 0.96
TRIM28-215ENST00000601150 PTPN12Q05209 780 aaKnown RBP21.03■□□□□ 0.96
TRIM28-215ENST00000601150 METTL24Q5JXM2 366 aa21.03■□□□□ 0.96
TRIM28-215ENST00000601150 ZBTB12Q9Y330 459 aaPredicted RBP21.03■□□□□ 0.96
TRIM28-215ENST00000601150 IRS2Q9Y4H2 1338 aa21.03■□□□□ 0.96
TRIM28-215ENST00000601150 EYA2O00167 538 aa21.02■□□□□ 0.96
TRIM28-215ENST00000601150 POTEIP0CG38 1075 aa21.02■□□□□ 0.96
TRIM28-215ENST00000601150 POTEJP0CG39 1038 aa21.02■□□□□ 0.96
TRIM28-215ENST00000601150 MTX1Q13505 466 aa21.02■□□□□ 0.96
TRIM28-215ENST00000601150 UBE4AQ14139 1066 aa21.02■□□□□ 0.96
TRIM28-215ENST00000601150 CHADLQ6NUI6 762 aa21.02■□□□□ 0.96
TRIM28-215ENST00000601150 DPF2Q92785 391 aa21.02■□□□□ 0.96
TRIM28-215ENST00000601150 ADARB2Q9NS39 739 aaKnown RBP21.02■□□□□ 0.96
TRIM28-215ENST00000601150 USP17L3A6NCW0 530 aa21.01■□□□□ 0.95
TRIM28-215ENST00000601150 USP17L4A6NCW7 530 aa21.01■□□□□ 0.95
TRIM28-215ENST00000601150 USP50Q70EL3 339 aaPredicted RBP21.01■□□□□ 0.95
TRIM28-215ENST00000601150 USP17L1Q7RTZ2 530 aa21.01■□□□□ 0.95
TRIM28-215ENST00000601150 PANK1Q8TE04 598 aa21.01■□□□□ 0.95
TRIM28-215ENST00000601150 CNOT7Q9UIV1 285 aaKnown RBP21.01■□□□□ 0.95
TRIM28-215ENST00000601150 FBXO3Q9UK99 471 aa21.01■□□□□ 0.95
TRIM28-215ENST00000601150 ZNF609O15014 1411 aa21.01■□□□□ 0.95
TRIM28-215ENST00000601150 SRGAP3O43295 1099 aa21■□□□□ 0.95
TRIM28-215ENST00000601150 PDE8BO95263 885 aa21■□□□□ 0.95
TRIM28-215ENST00000601150 HSPA6P17066 643 aa21■□□□□ 0.95
TRIM28-215ENST00000601150 RSBN1LQ6PCB5 846 aaPredicted RBP21■□□□□ 0.95
TRIM28-215ENST00000601150 ZNF804AQ7Z570 1209 aa21■□□□□ 0.95
TRIM28-215ENST00000601150 VGLL2Q8N8G2 317 aa21■□□□□ 0.95
TRIM28-215ENST00000601150 CD209Q9NNX6 404 aa21■□□□□ 0.95
TRIM28-215ENST00000601150 CLEC11AQ9Y240 323 aa21■□□□□ 0.95
TRIM28-215ENST00000601150 H7C1D1 291 aa20.99■□□□□ 0.95
TRIM28-215ENST00000601150 ZBTB7BO15156 539 aaPredicted RBP20.99■□□□□ 0.95
TRIM28-215ENST00000601150 CIAO1O76071 339 aa20.99■□□□□ 0.95
TRIM28-215ENST00000601150 MICALL2Q8IY33 904 aa20.99■□□□□ 0.95
TRIM28-215ENST00000601150 SIL1Q9H173 461 aa20.99■□□□□ 0.95
TRIM28-215ENST00000601150 COPRSQ9NQ92 184 aa20.99■□□□□ 0.95
TRIM28-215ENST00000601150 STRIP1Q5VSL9 837 aa20.98■□□□□ 0.95
TRIM28-215ENST00000601150 ATG9AQ7Z3C6 839 aa20.98■□□□□ 0.95
TRIM28-215ENST00000601150 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.98■□□□□ 0.95
TRIM28-215ENST00000601150 AGBL3Q8NEM8 1001 aa20.98■□□□□ 0.95
TRIM28-215ENST00000601150 FBXW7Q969H0 707 aa20.97■□□□□ 0.95
TRIM28-215ENST00000601150 PA2G4Q9UQ80 394 aaKnown RBP20.97■□□□□ 0.95
TRIM28-215ENST00000601150 SHTN1A0MZ66 631 aa20.96■□□□□ 0.95
TRIM28-215ENST00000601150 IL1R1P14778 569 aa20.96■□□□□ 0.95
TRIM28-215ENST00000601150 IL15P40933 162 aaPredicted RBP20.96■□□□□ 0.95
TRIM28-215ENST00000601150 PUM3Q15397 648 aaKnown RBP20.96■□□□□ 0.95
TRIM28-215ENST00000601150 DACT2Q5SW24 774 aa20.96■□□□□ 0.95
TRIM28-215ENST00000601150 TTLL5Q6EMB2 1281 aa20.96■□□□□ 0.95
TRIM28-215ENST00000601150 GMLQ99445 158 aa20.96■□□□□ 0.95
TRIM28-215ENST00000601150 HIBADHP31937 336 aaKnown RBP20.95■□□□□ 0.94
TRIM28-215ENST00000601150 GTF2IP78347 998 aa20.95■□□□□ 0.94
TRIM28-215ENST00000601150 MVPQ14764 893 aaKnown RBP20.95■□□□□ 0.94
TRIM28-215ENST00000601150 CEP126Q9P2H0 1117 aa20.95■□□□□ 0.94
TRIM28-215ENST00000601150 MYO3BQ8WXR4 1341 aa20.95■□□□□ 0.94
TRIM28-215ENST00000601150 PNMA6EA0A0J9YXQ4 647 aa20.94■□□□□ 0.94
TRIM28-215ENST00000601150 FGFR2P21802 821 aa20.94■□□□□ 0.94
TRIM28-215ENST00000601150 GYG1P46976 350 aa20.94■□□□□ 0.94
TRIM28-215ENST00000601150 APLP1P51693 650 aa20.94■□□□□ 0.94
TRIM28-215ENST00000601150 TRPM4Q8TD43 1214 aa20.94■□□□□ 0.94
TRIM28-215ENST00000601150 FAM84BQ96KN1 310 aaPredicted RBP20.94■□□□□ 0.94
TRIM28-215ENST00000601150 C1orf115Q9H7X2 142 aa20.94■□□□□ 0.94
TRIM28-215ENST00000601150 MYH13Q9UKX3 1938 aa20.94■□□□□ 0.94
TRIM28-215ENST00000601150 IFIT1P09914 478 aaKnown RBP20.93■□□□□ 0.94
TRIM28-215ENST00000601150 USP17L8P0C7I0 530 aa20.93■□□□□ 0.94
TRIM28-215ENST00000601150 PDE3AQ14432 1141 aa20.93■□□□□ 0.94
TRIM28-215ENST00000601150 CAVIN4Q5BKX8 364 aa20.93■□□□□ 0.94
TRIM28-215ENST00000601150 MAP1SQ66K74 1059 aaPredicted RBP20.93■□□□□ 0.94
TRIM28-215ENST00000601150 SAMD7Q7Z3H4 446 aa20.93■□□□□ 0.94
TRIM28-215ENST00000601150 MXD3Q9BW11 206 aa20.93■□□□□ 0.94
TRIM28-215ENST00000601150 DDX19BQ9UMR2 479 aa20.93■□□□□ 0.94
TRIM28-215ENST00000601150 COG6Q9Y2V7 657 aa20.93■□□□□ 0.94
TRIM28-215ENST00000601150 ARAP2Q8WZ64 1704 aa20.92■□□□□ 0.94
TRIM28-215ENST00000601150 SLC5A1P13866 664 aa20.92■□□□□ 0.94
TRIM28-215ENST00000601150 HIRAP54198 1017 aaPredicted RBP20.92■□□□□ 0.94
TRIM28-215ENST00000601150 ZNF280AP59817 542 aaPredicted RBP20.92■□□□□ 0.94
TRIM28-215ENST00000601150 ATP8B2P98198 1209 aa20.92■□□□□ 0.94
TRIM28-215ENST00000601150 TBC1D10BQ4KMP7 808 aaPredicted RBP20.92■□□□□ 0.94
TRIM28-215ENST00000601150 FBXO33Q7Z6M2 555 aa20.92■□□□□ 0.94
TRIM28-215ENST00000601150 VPS37DQ86XT2 251 aa20.92■□□□□ 0.94
TRIM28-215ENST00000601150 CNTROBQ8N137 903 aa20.92■□□□□ 0.94
TRIM28-215ENST00000601150 TDRD7Q8NHU6 1098 aaKnown RBP20.92■□□□□ 0.94
TRIM28-215ENST00000601150 ZC3H15Q8WU90 426 aaKnown RBP20.92■□□□□ 0.94
TRIM28-215ENST00000601150 LPIN2Q92539 896 aa20.92■□□□□ 0.94
TRIM28-215ENST00000601150 SASH1O94885 1247 aa20.91■□□□□ 0.94
TRIM28-215ENST00000601150 ITGBL1O95965 494 aaPredicted RBP20.91■□□□□ 0.94
TRIM28-215ENST00000601150 POLA2Q14181 598 aa20.91■□□□□ 0.94
TRIM28-215ENST00000601150 ATP2B3Q16720 1220 aa20.91■□□□□ 0.94
TRIM28-215ENST00000601150 RBM26Q5T8P6 1007 aaKnown RBP20.91■□□□□ 0.94
TRIM28-215ENST00000601150 PGAP2Q9UHJ9 254 aa20.91■□□□□ 0.94
TRIM28-215ENST00000601150 FAM205AQ6ZU69 1335 aa20.9■□□□□ 0.94
TRIM28-215ENST00000601150 KIF4BQ2VIQ3 1234 aa20.9■□□□□ 0.94
TRIM28-215ENST00000601150 OGFOD1Q8N543 542 aa20.9■□□□□ 0.94
TRIM28-215ENST00000601150 SSH3Q8TE77 659 aa20.9■□□□□ 0.94
TRIM28-215ENST00000601150 CHMP4BQ9H444 224 aaKnown RBP20.9■□□□□ 0.94
TRIM28-215ENST00000601150 POLR2AP24928 1970 aaKnown RBP20.9■□□□□ 0.94
TRIM28-215ENST00000601150 TRPM7Q96QT4 1865 aa20.9■□□□□ 0.94
TRIM28-215ENST00000601150 PASKQ96RG2 1323 aa20.89■□□□□ 0.93
TRIM28-215ENST00000601150 EGFRP00533 1210 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms