RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PSMD1Q99460 953 aa17.62■□□□□ 0.41
UPF1-211ENST00000600868 CCDC8Q9H0W5 538 aaPredicted RBP17.62■□□□□ 0.41
UPF1-211ENST00000600868 DBNLQ9UJU6 430 aaKnown RBP17.62■□□□□ 0.41
UPF1-211ENST00000600868 IRS2Q9Y4H2 1338 aa17.62■□□□□ 0.41
UPF1-211ENST00000600868 ADORA1P30542 326 aa17.61■□□□□ 0.41
UPF1-211ENST00000600868 DBNDD2Q9BQY9 259 aa17.61■□□□□ 0.41
UPF1-211ENST00000600868 BCL11AQ9H165 835 aa17.61■□□□□ 0.41
UPF1-211ENST00000600868 FER1L6Q2WGJ9 1857 aa17.61■□□□□ 0.41
UPF1-211ENST00000600868 PDE4AP27815 886 aa17.6■□□□□ 0.41
UPF1-211ENST00000600868 FKBP4Q02790 459 aaKnown RBP eCLIP17.6■□□□□ 0.41
UPF1-211ENST00000600868 EYA3Q99504 573 aa17.6■□□□□ 0.41
UPF1-211ENST00000600868 TLR7Q9NYK1 1049 aaKnown RBP17.6■□□□□ 0.41
UPF1-211ENST00000600868 SALL3Q9BXA9 1300 aa17.6■□□□□ 0.41
UPF1-211ENST00000600868 MED23Q9ULK4 1368 aa17.6■□□□□ 0.41
UPF1-211ENST00000600868 LTBP3Q9NS15 1303 aa17.59■□□□□ 0.41
UPF1-211ENST00000600868 KLRK1P26718 216 aa17.59■□□□□ 0.41
UPF1-211ENST00000600868 FBXO33Q7Z6M2 555 aa17.59■□□□□ 0.41
UPF1-211ENST00000600868 OTUD7AQ8TE49 926 aaPredicted RBP17.59■□□□□ 0.41
UPF1-211ENST00000600868 GPATCH3Q96I76 525 aa17.59■□□□□ 0.41
UPF1-211ENST00000600868 VPS33BQ9H267 617 aa17.59■□□□□ 0.41
UPF1-211ENST00000600868 STAP2Q9UGK3 403 aa17.59■□□□□ 0.41
UPF1-211ENST00000600868 TTC41PQ6P2S7 1318 aa17.58■□□□□ 0.4
UPF1-211ENST00000600868 MX1P20591 662 aa17.58■□□□□ 0.4
UPF1-211ENST00000600868 WASHC4Q2M389 1173 aa17.58■□□□□ 0.4
UPF1-211ENST00000600868 CAVIN4Q5BKX8 364 aa17.58■□□□□ 0.4
UPF1-211ENST00000600868 CCDC158Q5M9N0 1113 aa17.58■□□□□ 0.4
UPF1-211ENST00000600868 GORABQ5T7V8 394 aa17.58■□□□□ 0.4
UPF1-211ENST00000600868 PLEKHM2Q8IWE5 1019 aa17.58■□□□□ 0.4
UPF1-211ENST00000600868 FAM84BQ96KN1 310 aaPredicted RBP17.58■□□□□ 0.4
UPF1-211ENST00000600868 ZC3H12CQ9C0D7 883 aaKnown RBP17.58■□□□□ 0.4
UPF1-211ENST00000600868 TAOK3Q9H2K8 898 aa17.58■□□□□ 0.4
UPF1-211ENST00000600868 ECHDC1Q9NTX5 307 aa17.58■□□□□ 0.4
UPF1-211ENST00000600868 NFKBIEO00221 500 aa17.57■□□□□ 0.4
UPF1-211ENST00000600868 ZBTB22O15209 634 aa17.57■□□□□ 0.4
UPF1-211ENST00000600868 YBX3P16989 372 aaKnown RBP eCLIP17.57■□□□□ 0.4
UPF1-211ENST00000600868 HIBADHP31937 336 aaKnown RBP17.57■□□□□ 0.4
UPF1-211ENST00000600868 GYG1P46976 350 aa17.57■□□□□ 0.4
UPF1-211ENST00000600868 BCAMP50895 628 aa17.57■□□□□ 0.4
UPF1-211ENST00000600868 PDE1AP54750 535 aa17.57■□□□□ 0.4
UPF1-211ENST00000600868 CCDC102BQ68D86 513 aa17.57■□□□□ 0.4
UPF1-211ENST00000600868 TXNRD3Q86VQ6 643 aa17.57■□□□□ 0.4
UPF1-211ENST00000600868 ZNF512BQ96KM6 892 aaPredicted RBP17.57■□□□□ 0.4
UPF1-211ENST00000600868 GPR101Q96P66 508 aaPredicted RBP17.57■□□□□ 0.4
UPF1-211ENST00000600868 OSBPL3Q9H4L5 887 aa17.57■□□□□ 0.4
UPF1-211ENST00000600868 AOX1Q06278 1338 aa17.56■□□□□ 0.4
UPF1-211ENST00000600868 PHKA1P46020 1223 aa17.56■□□□□ 0.4
UPF1-211ENST00000600868 KIAA2012Q0VF49 1180 aa17.56■□□□□ 0.4
UPF1-211ENST00000600868 ZNF804AQ7Z570 1209 aa17.56■□□□□ 0.4
UPF1-211ENST00000600868 VPS37DQ86XT2 251 aa17.56■□□□□ 0.4
UPF1-211ENST00000600868 SRCAPQ6ZRS2 3230 aa17.55■□□□□ 0.4
UPF1-211ENST00000600868 RIMBP2O15034 1052 aa17.55■□□□□ 0.4
UPF1-211ENST00000600868 ATP5JP18859 108 aa17.55■□□□□ 0.4
UPF1-211ENST00000600868 ARID4AP29374 1257 aaPredicted RBP17.55■□□□□ 0.4
UPF1-211ENST00000600868 TTC39AQ5SRH9 613 aa17.55■□□□□ 0.4
UPF1-211ENST00000600868 PELP1Q8IZL8 1130 aaKnown RBP17.55■□□□□ 0.4
UPF1-211ENST00000600868 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.55■□□□□ 0.4
UPF1-211ENST00000600868 COA1Q9GZY4 146 aa17.55■□□□□ 0.4
UPF1-211ENST00000600868 GNL3LQ9NVN8 582 aaKnown RBP17.55■□□□□ 0.4
UPF1-211ENST00000600868 ERC2O15083 957 aa17.54■□□□□ 0.4
UPF1-211ENST00000600868 UQCRFS1P1P0C7P4 283 aa17.54■□□□□ 0.4
UPF1-211ENST00000600868 ARHGAP27Q6ZUM4 889 aa17.54■□□□□ 0.4
UPF1-211ENST00000600868 CD209Q9NNX6 404 aa17.54■□□□□ 0.4
UPF1-211ENST00000600868 ZNF277Q9NRM2 450 aaPredicted RBP17.54■□□□□ 0.4
UPF1-211ENST00000600868 SEMA3EO15041 775 aa17.53■□□□□ 0.4
UPF1-211ENST00000600868 PPIP5K2O43314 1243 aa17.53■□□□□ 0.4
UPF1-211ENST00000600868 GLRX3O76003 335 aaKnown RBP17.53■□□□□ 0.4
UPF1-211ENST00000600868 IL1R1P14778 569 aa17.53■□□□□ 0.4
UPF1-211ENST00000600868 IARSP41252 1262 aaKnown RBP17.53■□□□□ 0.4
UPF1-211ENST00000600868 GPR162Q16538 588 aa17.53■□□□□ 0.4
UPF1-211ENST00000600868 AOC3Q16853 763 aa17.53■□□□□ 0.4
UPF1-211ENST00000600868 SKAP1Q86WV1 359 aa17.53■□□□□ 0.4
UPF1-211ENST00000600868 TDRD7Q8NHU6 1098 aaKnown RBP17.53■□□□□ 0.4
UPF1-211ENST00000600868 PI4K2BQ8TCG2 481 aa17.53■□□□□ 0.4
UPF1-211ENST00000600868 GRIN3BO60391 1043 aa17.52■□□□□ 0.4
UPF1-211ENST00000600868 RGS3P49796 1198 aa17.52■□□□□ 0.4
UPF1-211ENST00000600868 TSHZ3Q63HK5 1081 aa17.52■□□□□ 0.4
UPF1-211ENST00000600868 PODNQ7Z5L7 613 aa17.52■□□□□ 0.4
UPF1-211ENST00000600868 LARGE2Q8N3Y3 721 aa17.52■□□□□ 0.4
UPF1-211ENST00000600868 G3V3G9 751 aa17.51■□□□□ 0.39
UPF1-211ENST00000600868 MCAMP43121 646 aa17.51■□□□□ 0.39
UPF1-211ENST00000600868 RASSF7Q02833 373 aa17.51■□□□□ 0.39
UPF1-211ENST00000600868 DCAF8Q5TAQ9 597 aa17.51■□□□□ 0.39
UPF1-211ENST00000600868 HAUS7Q99871 368 aa17.51■□□□□ 0.39
UPF1-211ENST00000600868 DENND2AQ9ULE3 1009 aa17.51■□□□□ 0.39
UPF1-211ENST00000600868 PDS5AQ29RF7 1337 aaKnown RBP17.5■□□□□ 0.39
UPF1-211ENST00000600868 LMNB1P20700 586 aa17.5■□□□□ 0.39
UPF1-211ENST00000600868 RASGRF1Q13972 1273 aa17.5■□□□□ 0.39
UPF1-211ENST00000600868 SCARF1Q14162 830 aa17.5■□□□□ 0.39
UPF1-211ENST00000600868 DOK7Q18PE1 504 aa17.5■□□□□ 0.39
UPF1-211ENST00000600868 BOLA2Q9H3K6 86 aa17.5■□□□□ 0.39
UPF1-211ENST00000600868 AKAP11Q9UKA4 1901 aa17.49■□□□□ 0.39
UPF1-211ENST00000600868 ECE2O60344 883 aa17.49■□□□□ 0.39
UPF1-211ENST00000600868 FRAT2O75474 233 aaPredicted RBP17.49■□□□□ 0.39
UPF1-211ENST00000600868 PRELPP51888 382 aa17.49■□□□□ 0.39
UPF1-211ENST00000600868 TTC22Q5TAA0 569 aa17.49■□□□□ 0.39
UPF1-211ENST00000600868 NIM1KQ8IY84 436 aa17.49■□□□□ 0.39
UPF1-211ENST00000600868 SPATA5Q8NB90 893 aa17.49■□□□□ 0.39
UPF1-211ENST00000600868 DBNDD1Q9H9R9 158 aa17.49■□□□□ 0.39
UPF1-211ENST00000600868 HMG20BQ9P0W2 317 aa17.49■□□□□ 0.39
UPF1-211ENST00000600868 IQSEC3Q9UPP2 1182 aaPredicted RBP17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms