RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 XDHP47989 1333 aa7.93□□□□□ -1.14
VRK3-220ENST00000600259 WNT10BO00744 389 aa7.92□□□□□ -1.14
VRK3-220ENST00000600259 APAF1O14727 1248 aa7.92□□□□□ -1.14
VRK3-220ENST00000600259 TBC1D8O95759 1140 aa7.92□□□□□ -1.14
VRK3-220ENST00000600259 HSP90B1P14625 803 aaKnown RBP7.92□□□□□ -1.14
VRK3-220ENST00000600259 GOLGA2Q08379 1002 aa7.92□□□□□ -1.14
VRK3-220ENST00000600259 ANKRD18AQ8IVF6 992 aa7.92□□□□□ -1.14
VRK3-220ENST00000600259 TSPYL6Q8N831 410 aa7.92□□□□□ -1.14
VRK3-220ENST00000600259 ZNF296Q8WUU4 475 aaPredicted RBP7.92□□□□□ -1.14
VRK3-220ENST00000600259 IFT57Q9NWB7 429 aa7.92□□□□□ -1.14
VRK3-220ENST00000600259 HPS5Q9UPZ3 1129 aa7.92□□□□□ -1.14
VRK3-220ENST00000600259 G3V3G9 751 aa7.91□□□□□ -1.14
VRK3-220ENST00000600259 H7C1W4 665 aa7.91□□□□□ -1.14
VRK3-220ENST00000600259 GPR25O00155 361 aa7.91□□□□□ -1.14
VRK3-220ENST00000600259 CCT4P50991 539 aaKnown RBP7.91□□□□□ -1.14
VRK3-220ENST00000600259 CTSWP56202 376 aa7.91□□□□□ -1.14
VRK3-220ENST00000600259 GNAI1P63096 354 aa7.91□□□□□ -1.14
VRK3-220ENST00000600259 PTPN12Q05209 780 aaKnown RBP7.91□□□□□ -1.14
VRK3-220ENST00000600259 WDR43Q15061 677 aaKnown RBP eCLIP7.91□□□□□ -1.14
VRK3-220ENST00000600259 LDLRAD1Q5T700 205 aa7.91□□□□□ -1.14
VRK3-220ENST00000600259 DCAF8Q5TAQ9 597 aa7.91□□□□□ -1.14
VRK3-220ENST00000600259 STRIP1Q5VSL9 837 aa7.91□□□□□ -1.14
VRK3-220ENST00000600259 KSR2Q6VAB6 950 aa7.91□□□□□ -1.14
VRK3-220ENST00000600259 CFHR5Q9BXR6 569 aa7.91□□□□□ -1.14
VRK3-220ENST00000600259 GREM2Q9H772 168 aa7.91□□□□□ -1.14
VRK3-220ENST00000600259 MAP3K2Q9Y2U5 619 aa7.91□□□□□ -1.14
VRK3-220ENST00000600259 MED23Q9ULK4 1368 aa7.9□□□□□ -1.14
VRK3-220ENST00000600259 IRS2Q9Y4H2 1338 aa7.9□□□□□ -1.14
VRK3-220ENST00000600259 PI4KAP2A4QPH2 592 aa7.9□□□□□ -1.14
VRK3-220ENST00000600259 SLC4A2P04920 1241 aa7.9□□□□□ -1.14
VRK3-220ENST00000600259 CSF1RP07333 972 aa7.9□□□□□ -1.14
VRK3-220ENST00000600259 CASP7P55210 303 aa7.9□□□□□ -1.14
VRK3-220ENST00000600259 PKN2Q16513 984 aaKnown RBP7.9□□□□□ -1.14
VRK3-220ENST00000600259 G2E3Q7L622 706 aa7.9□□□□□ -1.14
VRK3-220ENST00000600259 PI4KAP1Q8N8J0 262 aa7.9□□□□□ -1.14
VRK3-220ENST00000600259 COA1Q9GZY4 146 aa7.9□□□□□ -1.14
VRK3-220ENST00000600259 NEURL1BA8MQ27 555 aa7.89□□□□□ -1.15
VRK3-220ENST00000600259 KLRK1P26718 216 aa7.89□□□□□ -1.15
VRK3-220ENST00000600259 MMP14P50281 582 aa7.89□□□□□ -1.15
VRK3-220ENST00000600259 CWF19L2Q2TBE0 894 aaKnown RBP7.89□□□□□ -1.15
VRK3-220ENST00000600259 PRPF38BQ5VTL8 546 aaKnown RBP7.89□□□□□ -1.15
VRK3-220ENST00000600259 CCDC30Q5VVM6 783 aa7.89□□□□□ -1.15
VRK3-220ENST00000600259 TTLL5Q6EMB2 1281 aa7.89□□□□□ -1.15
VRK3-220ENST00000600259 CDC5LQ99459 802 aaKnown RBP7.89□□□□□ -1.15
VRK3-220ENST00000600259 PLA2G12BQ9BX93 195 aa7.89□□□□□ -1.15
VRK3-220ENST00000600259 PRKRIP1Q9H875 184 aaPredicted RBP7.89□□□□□ -1.15
VRK3-220ENST00000600259 LEMD3Q9Y2U8 911 aa7.89□□□□□ -1.15
VRK3-220ENST00000600259 PAPPA2Q9BXP8 1791 aa7.89□□□□□ -1.15
VRK3-220ENST00000600259 SNAP23O00161 211 aa7.88□□□□□ -1.15
VRK3-220ENST00000600259 SASH1O94885 1247 aa7.88□□□□□ -1.15
VRK3-220ENST00000600259 DDX58O95786 925 aaKnown RBP7.88□□□□□ -1.15
VRK3-220ENST00000600259 MAP3K11Q16584 847 aa7.88□□□□□ -1.15
VRK3-220ENST00000600259 SPRYD7Q5W111 196 aa7.88□□□□□ -1.15
VRK3-220ENST00000600259 FBXO46Q6PJ61 603 aaPredicted RBP7.88□□□□□ -1.15
VRK3-220ENST00000600259 OGFOD1Q8N543 542 aa7.88□□□□□ -1.15
VRK3-220ENST00000600259 CERS5Q8N5B7 392 aa7.88□□□□□ -1.15
VRK3-220ENST00000600259 FZD1Q9UP38 647 aa7.88□□□□□ -1.15
VRK3-220ENST00000600259 PSME4Q14997 1843 aa7.87□□□□□ -1.15
VRK3-220ENST00000600259 ZNF804BA4D1E1 1349 aa7.87□□□□□ -1.15
VRK3-220ENST00000600259 AOX1Q06278 1338 aa7.87□□□□□ -1.15
VRK3-220ENST00000600259 MYO3BQ8WXR4 1341 aa7.87□□□□□ -1.15
VRK3-220ENST00000600259 FKTNO75072 461 aa7.87□□□□□ -1.15
VRK3-220ENST00000600259 GTF2IP78347 998 aa7.87□□□□□ -1.15
VRK3-220ENST00000600259 CALD1Q05682 793 aaKnown RBP7.87□□□□□ -1.15
VRK3-220ENST00000600259 MKRN3Q13064 507 aaKnown RBP7.87□□□□□ -1.15
VRK3-220ENST00000600259 GCKRQ14397 625 aa7.87□□□□□ -1.15
VRK3-220ENST00000600259 C15orf52Q6ZUT6 534 aaKnown RBP7.87□□□□□ -1.15
VRK3-220ENST00000600259 KIAA0825Q8IV33 1275 aa7.87□□□□□ -1.15
VRK3-220ENST00000600259 MTMR14Q8NCE2 650 aa7.87□□□□□ -1.15
VRK3-220ENST00000600259 CD209Q9NNX6 404 aa7.87□□□□□ -1.15
VRK3-220ENST00000600259 HDAC9Q9UKV0 1011 aa7.87□□□□□ -1.15
VRK3-220ENST00000600259 PCDHAC2Q9Y5I4 1007 aa7.87□□□□□ -1.15
VRK3-220ENST00000600259 AKAP11Q9UKA4 1901 aa7.87□□□□□ -1.15
VRK3-220ENST00000600259 ZNF646O15015 1829 aaPredicted RBP7.87□□□□□ -1.15
VRK3-220ENST00000600259 HTTP42858 3142 aa7.86□□□□□ -1.15
VRK3-220ENST00000600259 ITGA6P23229 1130 aa7.86□□□□□ -1.15
VRK3-220ENST00000600259 GJA5P36382 358 aa7.86□□□□□ -1.15
VRK3-220ENST00000600259 CAP1Q01518 475 aa7.86□□□□□ -1.15
VRK3-220ENST00000600259 CHRNDQ07001 517 aa7.86□□□□□ -1.15
VRK3-220ENST00000600259 SREBF2Q12772 1141 aa7.86□□□□□ -1.15
VRK3-220ENST00000600259 PRKG1Q13976 671 aa7.86□□□□□ -1.15
VRK3-220ENST00000600259 TTLL12Q14166 644 aaPredicted RBP7.86□□□□□ -1.15
VRK3-220ENST00000600259 ARMC9Q7Z3E5 817 aa7.86□□□□□ -1.15
VRK3-220ENST00000600259 UBE3BQ7Z3V4 1068 aa7.86□□□□□ -1.15
VRK3-220ENST00000600259 APOBEC3FQ8IUX4 373 aaKnown RBP7.86□□□□□ -1.15
VRK3-220ENST00000600259 TSR2Q969E8 191 aaKnown RBP7.86□□□□□ -1.15
VRK3-220ENST00000600259 CLMNQ96JQ2 1002 aa7.86□□□□□ -1.15
VRK3-220ENST00000600259 CHMP4AQ9BY43 222 aa7.86□□□□□ -1.15
VRK3-220ENST00000600259 ANKRD2Q9GZV1 360 aa7.86□□□□□ -1.15
VRK3-220ENST00000600259 DEFB129Q9H1M3 183 aa7.86□□□□□ -1.15
VRK3-220ENST00000600259 IGF2BP3O00425 579 aaKnown RBP eCLIP7.85□□□□□ -1.15
VRK3-220ENST00000600259 ZBTB22O15209 634 aa7.85□□□□□ -1.15
VRK3-220ENST00000600259 USP2O75604 605 aaPredicted RBP7.85□□□□□ -1.15
VRK3-220ENST00000600259 IL1R1P14778 569 aa7.85□□□□□ -1.15
VRK3-220ENST00000600259 NF2P35240 595 aa7.85□□□□□ -1.15
VRK3-220ENST00000600259 IGHMBP2P38935 993 aaKnown RBP7.85□□□□□ -1.15
VRK3-220ENST00000600259 INHBEP58166 350 aa7.85□□□□□ -1.15
VRK3-220ENST00000600259 FOXO4P98177 505 aa7.85□□□□□ -1.15
VRK3-220ENST00000600259 NEXNQ0ZGT2 675 aa7.85□□□□□ -1.15
VRK3-220ENST00000600259 CCDC184Q52MB2 194 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms