RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 F6X3S4 739 aa12.45□□□□□ -0.42
VRK3-216ENST00000599342 AOC2O75106 756 aa12.45□□□□□ -0.42
VRK3-216ENST00000599342 CSF1RP07333 972 aa12.45□□□□□ -0.42
VRK3-216ENST00000599342 USP17L8P0C7I0 530 aa12.45□□□□□ -0.42
VRK3-216ENST00000599342 KCNJ4P48050 445 aa12.45□□□□□ -0.42
VRK3-216ENST00000599342 HUNKP57058 714 aa12.45□□□□□ -0.42
VRK3-216ENST00000599342 ZNF280AP59817 542 aaPredicted RBP12.45□□□□□ -0.42
VRK3-216ENST00000599342 C2orf69Q8N8R5 385 aa12.45□□□□□ -0.42
VRK3-216ENST00000599342 COA1Q9GZY4 146 aa12.45□□□□□ -0.42
VRK3-216ENST00000599342 CHMP3Q9Y3E7 222 aa12.45□□□□□ -0.42
VRK3-216ENST00000599342 ZNF804BA4D1E1 1349 aa12.44□□□□□ -0.42
VRK3-216ENST00000599342 MYO3BQ8WXR4 1341 aa12.44□□□□□ -0.42
VRK3-216ENST00000599342 IFIT5Q13325 482 aaKnown RBP12.44□□□□□ -0.42
VRK3-216ENST00000599342 SCARF1Q14162 830 aa12.44□□□□□ -0.42
VRK3-216ENST00000599342 BEND3Q5T5X7 828 aa12.44□□□□□ -0.42
VRK3-216ENST00000599342 OGFOD1Q8N543 542 aa12.44□□□□□ -0.42
VRK3-216ENST00000599342 GBA2Q9HCG7 927 aaPredicted RBP12.44□□□□□ -0.42
VRK3-216ENST00000599342 MYOZ2Q9NPC6 264 aa12.44□□□□□ -0.42
VRK3-216ENST00000599342 PSME4Q14997 1843 aa12.44□□□□□ -0.42
VRK3-216ENST00000599342 WTIPA6NIX2 430 aaPredicted RBP12.43□□□□□ -0.42
VRK3-216ENST00000599342 CA12O43570 354 aa12.43□□□□□ -0.42
VRK3-216ENST00000599342 BRPF1P55201 1214 aaPredicted RBP12.43□□□□□ -0.42
VRK3-216ENST00000599342 CHRNDQ07001 517 aa12.43□□□□□ -0.42
VRK3-216ENST00000599342 NOGQ13253 232 aa12.43□□□□□ -0.42
VRK3-216ENST00000599342 STRIP1Q5VSL9 837 aa12.43□□□□□ -0.42
VRK3-216ENST00000599342 ANGEL2Q5VTE6 544 aaKnown RBP12.43□□□□□ -0.42
VRK3-216ENST00000599342 SLC4A10Q6U841 1118 aa12.43□□□□□ -0.42
VRK3-216ENST00000599342 DLK2Q6UY11 383 aa12.43□□□□□ -0.42
VRK3-216ENST00000599342 GMLQ99445 158 aa12.43□□□□□ -0.42
VRK3-216ENST00000599342 ASTN2O75129 1339 aaPredicted RBP12.42□□□□□ -0.42
VRK3-216ENST00000599342 GRM8O00222 908 aa12.42□□□□□ -0.42
VRK3-216ENST00000599342 TAF7LQ5H9L4 462 aa12.42□□□□□ -0.42
VRK3-216ENST00000599342 RGMBQ6NW40 437 aa12.42□□□□□ -0.42
VRK3-216ENST00000599342 CDCA5Q96FF9 252 aa12.42□□□□□ -0.42
VRK3-216ENST00000599342 C9orf78Q9NZ63 289 aaPredicted RBP12.42□□□□□ -0.42
VRK3-216ENST00000599342 PITPNM2Q9BZ72 1349 aa12.41□□□□□ -0.42
VRK3-216ENST00000599342 ZNF157P51786 506 aaPredicted RBP12.41□□□□□ -0.42
VRK3-216ENST00000599342 FOXO4P98177 505 aa12.41□□□□□ -0.42
VRK3-216ENST00000599342 CCDC57Q2TAC2 916 aa12.41□□□□□ -0.42
VRK3-216ENST00000599342 DACT2Q5SW24 774 aa12.41□□□□□ -0.42
VRK3-216ENST00000599342 TTLL5Q6EMB2 1281 aa12.41□□□□□ -0.42
VRK3-216ENST00000599342 TXNRD3Q86VQ6 643 aa12.41□□□□□ -0.42
VRK3-216ENST00000599342 SRCIN1Q9C0H9 1055 aa12.41□□□□□ -0.42
VRK3-216ENST00000599342 TSKSQ9UJT2 592 aa12.41□□□□□ -0.42
VRK3-216ENST00000599342 HDAC9Q9UKV0 1011 aa12.41□□□□□ -0.42
VRK3-216ENST00000599342 ALDH1L1O75891 902 aa12.4□□□□□ -0.42
VRK3-216ENST00000599342 KLRK1P26718 216 aa12.4□□□□□ -0.42
VRK3-216ENST00000599342 MMP14P50281 582 aa12.4□□□□□ -0.42
VRK3-216ENST00000599342 LMBR1LQ6UX01 489 aa12.4□□□□□ -0.42
VRK3-216ENST00000599342 CCDC102AQ96A19 550 aa12.4□□□□□ -0.42
VRK3-216ENST00000599342 MXD3Q9BW11 206 aa12.4□□□□□ -0.42
VRK3-216ENST00000599342 ZNF521Q96K83 1311 aa12.39□□□□□ -0.43
VRK3-216ENST00000599342 TAF5LO75529 589 aa12.39□□□□□ -0.43
VRK3-216ENST00000599342 GTF2IP78347 998 aa12.39□□□□□ -0.43
VRK3-216ENST00000599342 ZNF804AQ7Z570 1209 aa12.39□□□□□ -0.43
VRK3-216ENST00000599342 HELBQ8NG08 1087 aaPredicted RBP12.39□□□□□ -0.43
VRK3-216ENST00000599342 CD209Q9NNX6 404 aa12.39□□□□□ -0.43
VRK3-216ENST00000599342 CNNM1Q9NRU3 951 aa12.39□□□□□ -0.43
VRK3-216ENST00000599342 FAM155AB1AL88 458 aaPredicted RBP12.38□□□□□ -0.43
VRK3-216ENST00000599342 E9PSI1 815 aa12.38□□□□□ -0.43
VRK3-216ENST00000599342 WNT10BO00744 389 aa12.38□□□□□ -0.43
VRK3-216ENST00000599342 FKBP1BP68106 108 aa12.38□□□□□ -0.43
VRK3-216ENST00000599342 NBPF9Q3BBW0 867 aa12.38□□□□□ -0.43
VRK3-216ENST00000599342 LDHAL6AQ6ZMR3 332 aa12.38□□□□□ -0.43
VRK3-216ENST00000599342 KIAA0825Q8IV33 1275 aa12.38□□□□□ -0.43
VRK3-216ENST00000599342 POLR2AP24928 1970 aaKnown RBP12.38□□□□□ -0.43
VRK3-216ENST00000599342 SNAP23O00161 211 aa12.37□□□□□ -0.43
VRK3-216ENST00000599342 PLIN1O60240 522 aa12.37□□□□□ -0.43
VRK3-216ENST00000599342 SASH1O94885 1247 aa12.37□□□□□ -0.43
VRK3-216ENST00000599342 SLC10A3P09131 477 aa12.37□□□□□ -0.43
VRK3-216ENST00000599342 NF2P35240 595 aa12.37□□□□□ -0.43
VRK3-216ENST00000599342 EPHA10Q5JZY3 1008 aa12.37□□□□□ -0.43
VRK3-216ENST00000599342 C15orf52Q6ZUT6 534 aaKnown RBP12.37□□□□□ -0.43
VRK3-216ENST00000599342 ZNF594Q96JF6 807 aaPredicted RBP12.37□□□□□ -0.43
VRK3-216ENST00000599342 ZIC5Q96T25 663 aa12.37□□□□□ -0.43
VRK3-216ENST00000599342 SCAF8Q9UPN6 1271 aaKnown RBP12.37□□□□□ -0.43
VRK3-216ENST00000599342 PAPPA2Q9BXP8 1791 aa12.37□□□□□ -0.43
VRK3-216ENST00000599342 ZNF646O15015 1829 aaPredicted RBP12.37□□□□□ -0.43
VRK3-216ENST00000599342 PTPRCP08575 1304 aa12.37□□□□□ -0.43
VRK3-216ENST00000599342 KIF23Q02241 960 aaPredicted RBP12.36□□□□□ -0.43
VRK3-216ENST00000599342 TTLL12Q14166 644 aaPredicted RBP12.36□□□□□ -0.43
VRK3-216ENST00000599342 APOBEC3FQ8IUX4 373 aaKnown RBP12.36□□□□□ -0.43
VRK3-216ENST00000599342 ABHD8Q96I13 439 aa12.36□□□□□ -0.43
VRK3-216ENST00000599342 SUCLG2Q96I99 432 aa12.36□□□□□ -0.43
VRK3-216ENST00000599342 IL1R1P14778 569 aa12.35□□□□□ -0.43
VRK3-216ENST00000599342 DLGAP5Q15398 846 aa12.35□□□□□ -0.43
VRK3-216ENST00000599342 RASAL3Q86YV0 1011 aa12.35□□□□□ -0.43
VRK3-216ENST00000599342 MRPL50Q8N5N7 158 aaKnown RBP12.35□□□□□ -0.43
VRK3-216ENST00000599342 SAGE1Q9NXZ1 904 aa12.35□□□□□ -0.43
VRK3-216ENST00000599342 A0A1B0GUL6 1792 aa12.35□□□□□ -0.43
VRK3-216ENST00000599342 IRS2Q9Y4H2 1338 aa12.35□□□□□ -0.43
VRK3-216ENST00000599342 F8W031 263 aaPredicted RBP12.34□□□□□ -0.43
VRK3-216ENST00000599342 MYO1BO43795 1136 aa12.34□□□□□ -0.43
VRK3-216ENST00000599342 NBPF7P0C2Y1 421 aaPredicted RBP12.34□□□□□ -0.43
VRK3-216ENST00000599342 PRAMEF18Q5VWM3 479 aa12.34□□□□□ -0.43
VRK3-216ENST00000599342 REM2Q8IYK8 340 aaPredicted RBP12.34□□□□□ -0.43
VRK3-216ENST00000599342 BICC1Q9H694 974 aaKnown RBP12.34□□□□□ -0.43
VRK3-216ENST00000599342 UTYO14607 1347 aa12.34□□□□□ -0.43
VRK3-216ENST00000599342 FKBP1AP62942 108 aaKnown RBP12.33□□□□□ -0.44
VRK3-216ENST00000599342 SLFN5Q08AF3 891 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms