RNA–Protein interactions for RNA: ENST00000599223.5

IRF3-223, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-223	ENST00000599223	SCARF1	Q14162	830 aa		18.82	■□□□□ 0.6
IRF3-223	ENST00000599223	GCKR	Q14397	625 aa		18.82	■□□□□ 0.6
IRF3-223	ENST00000599223	CHMP4A	Q9BY43	222 aa		18.82	■□□□□ 0.6
IRF3-223	ENST00000599223	MYOZ2	Q9NPC6	264 aa		18.82	■□□□□ 0.6
IRF3-223	ENST00000599223	USP17L3	A6NCW0	530 aa		18.81	■□□□□ 0.6
IRF3-223	ENST00000599223	USP17L4	A6NCW7	530 aa		18.81	■□□□□ 0.6
IRF3-223	ENST00000599223	USP17L8	P0C7I0	530 aa		18.81	■□□□□ 0.6
IRF3-223	ENST00000599223	CCT4	P50991	539 aa	Known RBP	18.81	■□□□□ 0.6
IRF3-223	ENST00000599223	DACT2	Q5SW24	774 aa		18.81	■□□□□ 0.6
IRF3-223	ENST00000599223	USP17L1	Q7RTZ2	530 aa		18.81	■□□□□ 0.6
IRF3-223	ENST00000599223	PODN	Q7Z5L7	613 aa		18.81	■□□□□ 0.6
IRF3-223	ENST00000599223	C2orf69	Q8N8R5	385 aa		18.81	■□□□□ 0.6
IRF3-223	ENST00000599223	SLC10A3	P09131	477 aa		18.8	■□□□□ 0.6
IRF3-223	ENST00000599223	PLA2G12B	Q9BX93	195 aa		18.8	■□□□□ 0.6
IRF3-223	ENST00000599223	MRS2	Q9HD23	443 aa		18.8	■□□□□ 0.6
IRF3-223	ENST00000599223	ITGA6	P23229	1130 aa		18.79	■□□□□ 0.6
IRF3-223	ENST00000599223	ZNF157	P51786	506 aa	Predicted RBP	18.79	■□□□□ 0.6
IRF3-223	ENST00000599223	FKBP5	Q13451	457 aa	Predicted RBP	18.79	■□□□□ 0.6
IRF3-223	ENST00000599223	MCOLN1	Q9GZU1	580 aa		18.79	■□□□□ 0.6
IRF3-223	ENST00000599223	PITPNM2	Q9BZ72	1349 aa		18.78	■□□□□ 0.6
IRF3-223	ENST00000599223	KIF23	Q02241	960 aa	Predicted RBP	18.78	■□□□□ 0.6
IRF3-223	ENST00000599223	NBPF9	Q3BBW0	867 aa		18.78	■□□□□ 0.6
IRF3-223	ENST00000599223	MOB2	Q70IA6	237 aa		18.78	■□□□□ 0.6
IRF3-223	ENST00000599223	RASAL3	Q86YV0	1011 aa		18.78	■□□□□ 0.6
IRF3-223	ENST00000599223	DNAAF4	Q8WXU2	420 aa		18.78	■□□□□ 0.6
IRF3-223	ENST00000599223	SPINK5	Q9NQ38	1064 aa	Predicted RBP	18.78	■□□□□ 0.6
IRF3-223	ENST00000599223	SALL2	Q9Y467	1007 aa	Predicted RBP	18.78	■□□□□ 0.6
IRF3-223	ENST00000599223	CCDC85C	A6NKD9	419 aa		18.77	■□□□□ 0.6
IRF3-223	ENST00000599223	VAMP4	O75379	141 aa		18.77	■□□□□ 0.6
IRF3-223	ENST00000599223	FBXW7	Q969H0	707 aa		18.77	■□□□□ 0.6
IRF3-223	ENST00000599223	ECM29	Q5VYK3	1845 aa		18.77	■□□□□ 0.59
IRF3-223	ENST00000599223	IRS2	Q9Y4H2	1338 aa		18.76	■□□□□ 0.59
IRF3-223	ENST00000599223		F6X3S4	739 aa		18.76	■□□□□ 0.59
IRF3-223	ENST00000599223	SNAP23	O00161	211 aa		18.76	■□□□□ 0.59
IRF3-223	ENST00000599223	SASH1	O94885	1247 aa		18.76	■□□□□ 0.59
IRF3-223	ENST00000599223	CSF1R	P07333	972 aa		18.76	■□□□□ 0.59
IRF3-223	ENST00000599223	IGHMBP2	P38935	993 aa	Known RBP	18.76	■□□□□ 0.59
IRF3-223	ENST00000599223	EXOSC9	Q06265	439 aa	Known RBP	18.76	■□□□□ 0.59
IRF3-223	ENST00000599223	NCBP3	Q53F19	620 aa	Known RBP	18.76	■□□□□ 0.59
IRF3-223	ENST00000599223	PRAMEF18	Q5VWM3	479 aa		18.76	■□□□□ 0.59
IRF3-223	ENST00000599223	LINS1	Q8NG48	757 aa		18.76	■□□□□ 0.59
IRF3-223	ENST00000599223	CCDC102A	Q96A19	550 aa		18.76	■□□□□ 0.59
IRF3-223	ENST00000599223	ZNF804B	A4D1E1	1349 aa		18.75	■□□□□ 0.59
IRF3-223	ENST00000599223	ZNF316	A6NFI3	1004 aa	Predicted RBP	18.75	■□□□□ 0.59
IRF3-223	ENST00000599223	COA1	Q9GZY4	146 aa		18.75	■□□□□ 0.59
IRF3-223	ENST00000599223	MYH16	Q9H6N6	1097 aa		18.75	■□□□□ 0.59
IRF3-223	ENST00000599223	WNT10B	O00744	389 aa		18.74	■□□□□ 0.59
IRF3-223	ENST00000599223	CHRND	Q07001	517 aa		18.74	■□□□□ 0.59
IRF3-223	ENST00000599223	DGKZ	Q13574	1117 aa		18.74	■□□□□ 0.59
IRF3-223	ENST00000599223	STRIP1	Q5VSL9	837 aa		18.74	■□□□□ 0.59
IRF3-223	ENST00000599223	RNF186	Q9NXI6	227 aa		18.74	■□□□□ 0.59
IRF3-223	ENST00000599223	SAGE1	Q9NXZ1	904 aa		18.74	■□□□□ 0.59
IRF3-223	ENST00000599223	LEMD3	Q9Y2U8	911 aa		18.74	■□□□□ 0.59
IRF3-223	ENST00000599223	FOXO4	P98177	505 aa		18.73	■□□□□ 0.59
IRF3-223	ENST00000599223	CSRNP1	Q96S65	589 aa		18.73	■□□□□ 0.59
IRF3-223	ENST00000599223	MYO3B	Q8WXR4	1341 aa		18.73	■□□□□ 0.59
IRF3-223	ENST00000599223	TNRC18	O15417	2968 aa	Predicted RBP	18.72	■□□□□ 0.59
IRF3-223	ENST00000599223	TRPA1	O75762	1119 aa		18.72	■□□□□ 0.59
IRF3-223	ENST00000599223	EPHA10	Q5JZY3	1008 aa		18.72	■□□□□ 0.59
IRF3-223	ENST00000599223	BEND3	Q5T5X7	828 aa		18.72	■□□□□ 0.59
IRF3-223	ENST00000599223	KIAA0825	Q8IV33	1275 aa		18.72	■□□□□ 0.59
IRF3-223	ENST00000599223	WDR63	Q8IWG1	891 aa		18.72	■□□□□ 0.59
IRF3-223	ENST00000599223	MPHOSPH8	Q99549	860 aa		18.72	■□□□□ 0.59
IRF3-223	ENST00000599223	ARAP2	Q8WZ64	1704 aa		18.71	■□□□□ 0.59
IRF3-223	ENST00000599223	TAF5L	O75529	589 aa		18.71	■□□□□ 0.59
IRF3-223	ENST00000599223	FKBP1B	P68106	108 aa		18.71	■□□□□ 0.59
IRF3-223	ENST00000599223	CERS5	Q8N5B7	392 aa		18.71	■□□□□ 0.59
IRF3-223	ENST00000599223	HELB	Q8NG08	1087 aa	Predicted RBP	18.71	■□□□□ 0.59
IRF3-223	ENST00000599223	ANKRD2	Q9GZV1	360 aa		18.71	■□□□□ 0.59
IRF3-223	ENST00000599223	SSC5D	A1L4H1	1573 aa		18.71	■□□□□ 0.59
IRF3-223	ENST00000599223	UBE2Q2L	H0YL09	131 aa		18.7	■□□□□ 0.58
IRF3-223	ENST00000599223	GTF2I	P78347	998 aa		18.7	■□□□□ 0.58
IRF3-223	ENST00000599223	TTLL5	Q6EMB2	1281 aa		18.7	■□□□□ 0.58
IRF3-223	ENST00000599223	OGFOD1	Q8N543	542 aa		18.7	■□□□□ 0.58
IRF3-223	ENST00000599223	ZBED3	Q96IU2	234 aa	Predicted RBP	18.7	■□□□□ 0.58
IRF3-223	ENST00000599223	LAMB1	P07942	1786 aa		18.7	■□□□□ 0.58
IRF3-223	ENST00000599223	ANKRD18B	A2A2Z9	1011 aa		18.69	■□□□□ 0.58
IRF3-223	ENST00000599223	KCNJ4	P48050	445 aa		18.69	■□□□□ 0.58
IRF3-223	ENST00000599223	CD209	Q9NNX6	404 aa		18.69	■□□□□ 0.58
IRF3-223	ENST00000599223	PCDHAC2	Q9Y5I4	1007 aa		18.69	■□□□□ 0.58
IRF3-223	ENST00000599223	ANP32C	O43423	234 aa		18.68	■□□□□ 0.58
IRF3-223	ENST00000599223	RGS19	P49795	217 aa		18.68	■□□□□ 0.58
IRF3-223	ENST00000599223	ZNF594	Q96JF6	807 aa	Predicted RBP	18.68	■□□□□ 0.58
IRF3-223	ENST00000599223	CHMP3	Q9Y3E7	222 aa		18.68	■□□□□ 0.58
IRF3-223	ENST00000599223	AOX1	Q06278	1338 aa		18.68	■□□□□ 0.58
IRF3-223	ENST00000599223	OTOF	Q9HC10	1997 aa		18.68	■□□□□ 0.58
IRF3-223	ENST00000599223	IFIT5	Q13325	482 aa	Known RBP	18.67	■□□□□ 0.58
IRF3-223	ENST00000599223	LMBR1L	Q6UX01	489 aa		18.67	■□□□□ 0.58
IRF3-223	ENST00000599223	FZD1	Q9UP38	647 aa		18.67	■□□□□ 0.58
IRF3-223	ENST00000599223	GRM8	O00222	908 aa		18.66	■□□□□ 0.58
IRF3-223	ENST00000599223	TTLL12	Q14166	644 aa	Predicted RBP	18.66	■□□□□ 0.58
IRF3-223	ENST00000599223	C15orf52	Q6ZUT6	534 aa	Known RBP	18.66	■□□□□ 0.58
IRF3-223	ENST00000599223	JAG2	Q9Y219	1238 aa		18.66	■□□□□ 0.58
IRF3-223	ENST00000599223	HTT	P42858	3142 aa		18.66	■□□□□ 0.58
IRF3-223	ENST00000599223	COL1A1	P02452	1464 aa	Predicted RBP	18.65	■□□□□ 0.58
IRF3-223	ENST00000599223	MLLT1	Q03111	559 aa	Predicted RBP	18.65	■□□□□ 0.58
IRF3-223	ENST00000599223	MKRN3	Q13064	507 aa	Known RBP	18.65	■□□□□ 0.58
IRF3-223	ENST00000599223	APOBEC3F	Q8IUX4	373 aa	Known RBP	18.65	■□□□□ 0.58
IRF3-223	ENST00000599223	PRKG1	Q13976	671 aa		18.64	■□□□□ 0.57
IRF3-223	ENST00000599223	KAZALD1	Q96I82	304 aa		18.64	■□□□□ 0.57

Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms