RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 A0A1B0GUL6 1792 aa22.63■■□□□ 1.21
LIG1-216ENST00000598938 POLA2Q14181 598 aa22.63■■□□□ 1.21
LIG1-216ENST00000598938 LRRC24Q50LG9 513 aa22.63■■□□□ 1.21
LIG1-216ENST00000598938 SSH3Q8TE77 659 aa22.63■■□□□ 1.21
LIG1-216ENST00000598938 ANKRD2Q9GZV1 360 aa22.63■■□□□ 1.21
LIG1-216ENST00000598938 ANKIB1Q9P2G1 1089 aa22.63■■□□□ 1.21
LIG1-216ENST00000598938 POLLQ9UGP5 575 aa22.63■■□□□ 1.21
LIG1-216ENST00000598938 LBX1P52954 281 aa22.62■■□□□ 1.21
LIG1-216ENST00000598938 TBC1D16Q8TBP0 767 aa22.62■■□□□ 1.21
LIG1-216ENST00000598938 VPS33BQ9H267 617 aa22.62■■□□□ 1.21
LIG1-216ENST00000598938 GGA1Q9UJY5 639 aa22.62■■□□□ 1.21
LIG1-216ENST00000598938 FBXO3Q9UK99 471 aa22.62■■□□□ 1.21
LIG1-216ENST00000598938 EYA2O00167 538 aa22.61■■□□□ 1.21
LIG1-216ENST00000598938 ATP2B4P23634 1241 aa22.61■■□□□ 1.21
LIG1-216ENST00000598938 MAP1SQ66K74 1059 aaPredicted RBP22.61■■□□□ 1.21
LIG1-216ENST00000598938 PA2G4Q9UQ80 394 aaKnown RBP22.61■■□□□ 1.21
LIG1-216ENST00000598938 MROH5Q6ZUA9 1318 aa22.6■■□□□ 1.21
LIG1-216ENST00000598938 WDR33Q9C0J8 1336 aaKnown RBP22.6■■□□□ 1.21
LIG1-216ENST00000598938 CIAO1O76071 339 aa22.6■■□□□ 1.21
LIG1-216ENST00000598938 UFL1O94874 794 aa22.6■■□□□ 1.21
LIG1-216ENST00000598938 HSPA8P11142 646 aaKnown RBP22.6■■□□□ 1.21
LIG1-216ENST00000598938 EIF6P56537 245 aaKnown RBP22.6■■□□□ 1.21
LIG1-216ENST00000598938 ATG9AQ7Z3C6 839 aa22.6■■□□□ 1.21
LIG1-216ENST00000598938 RPAP2Q8IXW5 612 aaPredicted RBP22.6■■□□□ 1.21
LIG1-216ENST00000598938 C6orf229H3BNL8 230 aa22.59■■□□□ 1.21
LIG1-216ENST00000598938 LMOD1P29536 600 aaPredicted RBP22.59■■□□□ 1.21
LIG1-216ENST00000598938 SIL1Q9H173 461 aa22.59■■□□□ 1.21
LIG1-216ENST00000598938 LEMD3Q9Y2U8 911 aa22.59■■□□□ 1.21
LIG1-216ENST00000598938 COL4A5P29400 1685 aa22.58■■□□□ 1.21
LIG1-216ENST00000598938 WTIPA6NIX2 430 aaPredicted RBP22.58■■□□□ 1.21
LIG1-216ENST00000598938 KIAA2012Q0VF49 1180 aa22.58■■□□□ 1.21
LIG1-216ENST00000598938 HELBQ8NG08 1087 aaPredicted RBP22.58■■□□□ 1.21
LIG1-216ENST00000598938 EYA3Q99504 573 aa22.58■■□□□ 1.21
LIG1-216ENST00000598938 ABT1Q9ULW3 272 aaKnown RBP22.58■■□□□ 1.21
LIG1-216ENST00000598938 PPIP5K2O43314 1243 aa22.57■■□□□ 1.2
LIG1-216ENST00000598938 TAF5LO75529 589 aa22.57■■□□□ 1.2
LIG1-216ENST00000598938 AOC3Q16853 763 aa22.57■■□□□ 1.2
LIG1-216ENST00000598938 SIRT2Q8IXJ6 389 aa22.57■■□□□ 1.2
LIG1-216ENST00000598938 VGLL2Q8N8G2 317 aa22.57■■□□□ 1.2
LIG1-216ENST00000598938 GPR101Q96P66 508 aaPredicted RBP22.57■■□□□ 1.2
LIG1-216ENST00000598938 ZNF804BA4D1E1 1349 aa22.57■■□□□ 1.2
LIG1-216ENST00000598938 IL15P40933 162 aaPredicted RBP22.56■■□□□ 1.2
LIG1-216ENST00000598938 ECE1P42892 770 aa22.56■■□□□ 1.2
LIG1-216ENST00000598938 WASHC4Q2M389 1173 aa22.56■■□□□ 1.2
LIG1-216ENST00000598938 METTL24Q5JXM2 366 aa22.56■■□□□ 1.2
LIG1-216ENST00000598938 MED23Q9ULK4 1368 aa22.55■■□□□ 1.2
LIG1-216ENST00000598938 CENPBP07199 599 aaPredicted RBP22.55■■□□□ 1.2
LIG1-216ENST00000598938 AAMPQ13685 434 aa22.55■■□□□ 1.2
LIG1-216ENST00000598938 USP50Q70EL3 339 aaPredicted RBP22.55■■□□□ 1.2
LIG1-216ENST00000598938 LARGE2Q8N3Y3 721 aa22.55■■□□□ 1.2
LIG1-216ENST00000598938 NOP58Q9Y2X3 529 aaKnown RBP22.55■■□□□ 1.2
LIG1-216ENST00000598938 IRS2Q9Y4H2 1338 aa22.55■■□□□ 1.2
LIG1-216ENST00000598938 SNAP23O00161 211 aa22.54■■□□□ 1.2
LIG1-216ENST00000598938 PDE8BO95263 885 aa22.54■■□□□ 1.2
LIG1-216ENST00000598938 KCNJ4P48050 445 aa22.54■■□□□ 1.2
LIG1-216ENST00000598938 SCNN1DP51172 638 aa22.54■■□□□ 1.2
LIG1-216ENST00000598938 EXOC6Q8TAG9 804 aa22.54■■□□□ 1.2
LIG1-216ENST00000598938 ABHD8Q96I13 439 aa22.54■■□□□ 1.2
LIG1-216ENST00000598938 RIMBP2O15034 1052 aa22.53■■□□□ 1.2
LIG1-216ENST00000598938 HMMRO75330 724 aa22.53■■□□□ 1.2
LIG1-216ENST00000598938 UBE4AQ14139 1066 aa22.53■■□□□ 1.2
LIG1-216ENST00000598938 C15orf52Q6ZUT6 534 aaKnown RBP22.53■■□□□ 1.2
LIG1-216ENST00000598938 ZC3H12CQ9C0D7 883 aaKnown RBP22.53■■□□□ 1.2
LIG1-216ENST00000598938 GJA3Q9Y6H8 435 aa22.53■■□□□ 1.2
LIG1-216ENST00000598938 G3BP1Q13283 466 aaKnown RBP eCLIP22.52■■□□□ 1.2
LIG1-216ENST00000598938 BEGAINQ9BUH8 593 aa22.52■■□□□ 1.2
LIG1-216ENST00000598938 CEP126Q9P2H0 1117 aa22.52■■□□□ 1.2
LIG1-216ENST00000598938 PCDHB15Q9Y5E8 787 aa22.52■■□□□ 1.2
LIG1-216ENST00000598938 SURF6O75683 361 aaKnown RBP22.51■■□□□ 1.19
LIG1-216ENST00000598938 FGFR2P21802 821 aa22.51■■□□□ 1.19
LIG1-216ENST00000598938 KLRK1P26718 216 aa22.51■■□□□ 1.19
LIG1-216ENST00000598938 NIM1KQ8IY84 436 aa22.51■■□□□ 1.19
LIG1-216ENST00000598938 CAPNS2Q96L46 248 aa22.51■■□□□ 1.19
LIG1-216ENST00000598938 IRX6P78412 446 aaPredicted RBP22.5■■□□□ 1.19
LIG1-216ENST00000598938 PUM3Q15397 648 aaKnown RBP22.5■■□□□ 1.19
LIG1-216ENST00000598938 TXNRD3Q86VQ6 643 aa22.5■■□□□ 1.19
LIG1-216ENST00000598938 SASH1O94885 1247 aa22.49■■□□□ 1.19
LIG1-216ENST00000598938 EPS15P42566 896 aa22.49■■□□□ 1.19
LIG1-216ENST00000598938 TFCP2Q12800 502 aa22.49■■□□□ 1.19
LIG1-216ENST00000598938 ZNRF3Q9ULT6 936 aa22.49■■□□□ 1.19
LIG1-216ENST00000598938 TLL2Q9Y6L7 1015 aa22.49■■□□□ 1.19
LIG1-216ENST00000598938 SLC34A2O95436 690 aa22.48■■□□□ 1.19
LIG1-216ENST00000598938 MAP2K2P36507 400 aa22.48■■□□□ 1.19
LIG1-216ENST00000598938 DOK7Q18PE1 504 aa22.48■■□□□ 1.19
LIG1-216ENST00000598938 DBNDD1Q9H9R9 158 aa22.48■■□□□ 1.19
LIG1-216ENST00000598938 YDJCA8MPS7 323 aa22.47■■□□□ 1.19
LIG1-216ENST00000598938 ECE2O60344 883 aa22.47■■□□□ 1.19
LIG1-216ENST00000598938 OS9Q13438 667 aaPredicted RBP22.47■■□□□ 1.19
LIG1-216ENST00000598938 LPIN2Q92539 896 aa22.47■■□□□ 1.19
LIG1-216ENST00000598938 ADARB2Q9NS39 739 aaKnown RBP22.47■■□□□ 1.19
LIG1-216ENST00000598938 EXOC6BQ9Y2D4 811 aa22.47■■□□□ 1.19
LIG1-216ENST00000598938 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.47■■□□□ 1.19
LIG1-216ENST00000598938 CA12O43570 354 aa22.46■■□□□ 1.19
LIG1-216ENST00000598938 ATP2B3Q16720 1220 aa22.46■■□□□ 1.19
LIG1-216ENST00000598938 HSP90AB4PQ58FF6 505 aa22.46■■□□□ 1.19
LIG1-216ENST00000598938 CST9Q5W186 159 aa22.46■■□□□ 1.19
LIG1-216ENST00000598938 PAXIP1Q6ZW49 1069 aaPredicted RBP22.46■■□□□ 1.19
LIG1-216ENST00000598938 HHIPL1Q96JK4 782 aa22.46■■□□□ 1.19
LIG1-216ENST00000598938 COA1Q9GZY4 146 aa22.46■■□□□ 1.19
LIG1-216ENST00000598938 GPRC5DQ9NZD1 345 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms