RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 PNMA8AQ86V59 439 aaPredicted RBP17.31■□□□□ 0.36
UPF1-205ENST00000598209 LDHDQ86WU2 507 aa17.31■□□□□ 0.36
UPF1-205ENST00000598209 GNAI2P04899 355 aa17.3■□□□□ 0.36
UPF1-205ENST00000598209 VIL1P09327 827 aaKnown RBP17.3■□□□□ 0.36
UPF1-205ENST00000598209 HSPA6P17066 643 aa17.3■□□□□ 0.36
UPF1-205ENST00000598209 PTPN12Q05209 780 aaKnown RBP17.3■□□□□ 0.36
UPF1-205ENST00000598209 METTL24Q5JXM2 366 aa17.3■□□□□ 0.36
UPF1-205ENST00000598209 CHADLQ6NUI6 762 aa17.3■□□□□ 0.36
UPF1-205ENST00000598209 C15orf52Q6ZUT6 534 aaKnown RBP17.3■□□□□ 0.36
UPF1-205ENST00000598209 ITPRIPQ8IWB1 547 aa17.3■□□□□ 0.36
UPF1-205ENST00000598209 USP17L3A6NCW0 530 aa17.29■□□□□ 0.36
UPF1-205ENST00000598209 USP17L4A6NCW7 530 aa17.29■□□□□ 0.36
UPF1-205ENST00000598209 EYA2O00167 538 aa17.29■□□□□ 0.36
UPF1-205ENST00000598209 RPS12P25398 132 aaKnown RBP17.29■□□□□ 0.36
UPF1-205ENST00000598209 UBE4AQ14139 1066 aa17.29■□□□□ 0.36
UPF1-205ENST00000598209 USP17L1Q7RTZ2 530 aa17.29■□□□□ 0.36
UPF1-205ENST00000598209 PANK1Q8TE04 598 aa17.29■□□□□ 0.36
UPF1-205ENST00000598209 DPF2Q92785 391 aa17.29■□□□□ 0.36
UPF1-205ENST00000598209 ADARB2Q9NS39 739 aaKnown RBP17.29■□□□□ 0.36
UPF1-205ENST00000598209 CNOT7Q9UIV1 285 aaKnown RBP17.29■□□□□ 0.36
UPF1-205ENST00000598209 CLEC11AQ9Y240 323 aa17.29■□□□□ 0.36
UPF1-205ENST00000598209 SHTN1A0MZ66 631 aa17.28■□□□□ 0.36
UPF1-205ENST00000598209 RSBN1LQ6PCB5 846 aaPredicted RBP17.28■□□□□ 0.36
UPF1-205ENST00000598209 USP50Q70EL3 339 aaPredicted RBP17.28■□□□□ 0.36
UPF1-205ENST00000598209 MICALL2Q8IY33 904 aa17.28■□□□□ 0.36
UPF1-205ENST00000598209 CD209Q9NNX6 404 aa17.28■□□□□ 0.36
UPF1-205ENST00000598209 H7C1D1 291 aa17.27■□□□□ 0.36
UPF1-205ENST00000598209 SRGAP3O43295 1099 aa17.27■□□□□ 0.36
UPF1-205ENST00000598209 MS4A1P11836 297 aa17.27■□□□□ 0.36
UPF1-205ENST00000598209 MTX1Q13505 466 aa17.27■□□□□ 0.36
UPF1-205ENST00000598209 ZNF804AQ7Z570 1209 aa17.27■□□□□ 0.36
UPF1-205ENST00000598209 VGLL2Q8N8G2 317 aa17.27■□□□□ 0.36
UPF1-205ENST00000598209 FBXW7Q969H0 707 aa17.27■□□□□ 0.36
UPF1-205ENST00000598209 SIL1Q9H173 461 aa17.27■□□□□ 0.36
UPF1-205ENST00000598209 FBXO3Q9UK99 471 aa17.27■□□□□ 0.36
UPF1-205ENST00000598209 PA2G4Q9UQ80 394 aaKnown RBP17.27■□□□□ 0.36
UPF1-205ENST00000598209 ZNF609O15014 1411 aa17.27■□□□□ 0.35
UPF1-205ENST00000598209 PDE8BO95263 885 aa17.26■□□□□ 0.35
UPF1-205ENST00000598209 ATG9AQ7Z3C6 839 aa17.26■□□□□ 0.35
UPF1-205ENST00000598209 AGBL3Q8NEM8 1001 aa17.26■□□□□ 0.35
UPF1-205ENST00000598209 COPRSQ9NQ92 184 aa17.26■□□□□ 0.35
UPF1-205ENST00000598209 ZBTB7BO15156 539 aaPredicted RBP17.25■□□□□ 0.35
UPF1-205ENST00000598209 CIAO1O76071 339 aa17.25■□□□□ 0.35
UPF1-205ENST00000598209 DACT2Q5SW24 774 aa17.25■□□□□ 0.35
UPF1-205ENST00000598209 STRIP1Q5VSL9 837 aa17.25■□□□□ 0.35
UPF1-205ENST00000598209 TTLL5Q6EMB2 1281 aa17.25■□□□□ 0.35
UPF1-205ENST00000598209 TRPM4Q8TD43 1214 aa17.25■□□□□ 0.35
UPF1-205ENST00000598209 POLR2AP24928 1970 aaKnown RBP17.25■□□□□ 0.35
UPF1-205ENST00000598209 MYH13Q9UKX3 1938 aa17.24■□□□□ 0.35
UPF1-205ENST00000598209 IL1R1P14778 569 aa17.24■□□□□ 0.35
UPF1-205ENST00000598209 GYG1P46976 350 aa17.24■□□□□ 0.35
UPF1-205ENST00000598209 GTF2IP78347 998 aa17.24■□□□□ 0.35
UPF1-205ENST00000598209 MAP1SQ66K74 1059 aaPredicted RBP17.24■□□□□ 0.35
UPF1-205ENST00000598209 SAMD7Q7Z3H4 446 aa17.24■□□□□ 0.35
UPF1-205ENST00000598209 GMLQ99445 158 aa17.24■□□□□ 0.35
UPF1-205ENST00000598209 MXD3Q9BW11 206 aa17.24■□□□□ 0.35
UPF1-205ENST00000598209 C1orf115Q9H7X2 142 aa17.24■□□□□ 0.35
UPF1-205ENST00000598209 PNMA6EA0A0J9YXQ4 647 aa17.23■□□□□ 0.35
UPF1-205ENST00000598209 HIBADHP31937 336 aaKnown RBP17.23■□□□□ 0.35
UPF1-205ENST00000598209 IL15P40933 162 aaPredicted RBP17.23■□□□□ 0.35
UPF1-205ENST00000598209 APLP1P51693 650 aa17.23■□□□□ 0.35
UPF1-205ENST00000598209 HIRAP54198 1017 aaPredicted RBP17.23■□□□□ 0.35
UPF1-205ENST00000598209 PUM3Q15397 648 aaKnown RBP17.23■□□□□ 0.35
UPF1-205ENST00000598209 TBC1D10BQ4KMP7 808 aaPredicted RBP17.23■□□□□ 0.35
UPF1-205ENST00000598209 CNTROBQ8N137 903 aa17.23■□□□□ 0.35
UPF1-205ENST00000598209 FAM84BQ96KN1 310 aaPredicted RBP17.23■□□□□ 0.35
UPF1-205ENST00000598209 CEP126Q9P2H0 1117 aa17.23■□□□□ 0.35
UPF1-205ENST00000598209 MYO3BQ8WXR4 1341 aa17.22■□□□□ 0.35
UPF1-205ENST00000598209 TRPM7Q96QT4 1865 aa17.22■□□□□ 0.35
UPF1-205ENST00000598209 ITGBL1O95965 494 aaPredicted RBP17.22■□□□□ 0.35
UPF1-205ENST00000598209 IFIT1P09914 478 aaKnown RBP17.22■□□□□ 0.35
UPF1-205ENST00000598209 USP17L8P0C7I0 530 aa17.22■□□□□ 0.35
UPF1-205ENST00000598209 FGFR2P21802 821 aa17.22■□□□□ 0.35
UPF1-205ENST00000598209 MVPQ14764 893 aaKnown RBP17.22■□□□□ 0.35
UPF1-205ENST00000598209 RBM26Q5T8P6 1007 aaKnown RBP17.22■□□□□ 0.35
UPF1-205ENST00000598209 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.22■□□□□ 0.35
UPF1-205ENST00000598209 ARAP2Q8WZ64 1704 aa17.21■□□□□ 0.35
UPF1-205ENST00000598209 EGFRP00533 1210 aa17.21■□□□□ 0.35
UPF1-205ENST00000598209 SLC5A1P13866 664 aa17.21■□□□□ 0.35
UPF1-205ENST00000598209 ZNF280AP59817 542 aaPredicted RBP17.21■□□□□ 0.35
UPF1-205ENST00000598209 KIF4BQ2VIQ3 1234 aa17.21■□□□□ 0.35
UPF1-205ENST00000598209 CAVIN4Q5BKX8 364 aa17.21■□□□□ 0.35
UPF1-205ENST00000598209 FBXO33Q7Z6M2 555 aa17.21■□□□□ 0.35
UPF1-205ENST00000598209 VPS37DQ86XT2 251 aa17.21■□□□□ 0.35
UPF1-205ENST00000598209 TDRD7Q8NHU6 1098 aaKnown RBP17.21■□□□□ 0.35
UPF1-205ENST00000598209 COG6Q9Y2V7 657 aa17.21■□□□□ 0.35
UPF1-205ENST00000598209 PASKQ96RG2 1323 aa17.21■□□□□ 0.34
UPF1-205ENST00000598209 ATP8B2P98198 1209 aa17.2■□□□□ 0.34
UPF1-205ENST00000598209 ZC3H15Q8WU90 426 aaKnown RBP17.2■□□□□ 0.34
UPF1-205ENST00000598209 LPIN2Q92539 896 aa17.2■□□□□ 0.34
UPF1-205ENST00000598209 PGAP2Q9UHJ9 254 aa17.2■□□□□ 0.34
UPF1-205ENST00000598209 SASH1O94885 1247 aa17.19■□□□□ 0.34
UPF1-205ENST00000598209 BCAMP50895 628 aa17.19■□□□□ 0.34
UPF1-205ENST00000598209 HTRA3P83110 453 aa17.19■□□□□ 0.34
UPF1-205ENST00000598209 POLA2Q14181 598 aa17.19■□□□□ 0.34
UPF1-205ENST00000598209 PDE3AQ14432 1141 aa17.19■□□□□ 0.34
UPF1-205ENST00000598209 ATP2B3Q16720 1220 aa17.19■□□□□ 0.34
UPF1-205ENST00000598209 DDX19BQ9UMR2 479 aa17.19■□□□□ 0.34
UPF1-205ENST00000598209 JAG2Q9Y219 1238 aa17.19■□□□□ 0.34
UPF1-205ENST00000598209 FAM205AQ6ZU69 1335 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms