RNA–Protein interactions for RNA: ENST00000589447.1

LINC01539-203, Transcript of long intergenic non-protein coding RNA 1539, humanhuman

TSL 4

Gene LINC01539, Length 575 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01539-203ENST00000589447 YTHDC2Q9H6S0 1430 aaKnown RBP3.98□□□□□ -1.77
LINC01539-203ENST00000589447 hCG_2014768A0A024R1R8 64 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 NUTM2BA6NNL0 878 aaPredicted RBP3.98□□□□□ -1.77
LINC01539-203ENST00000589447 SMTNL1A8MU46 457 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 NUTM2EB1AL46 878 aaPredicted RBP3.98□□□□□ -1.77
LINC01539-203ENST00000589447 SCAMP3O14828 347 aaKnown RBP3.98□□□□□ -1.77
LINC01539-203ENST00000589447 CBX1P83916 185 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 RNF20Q5VTR2 975 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 SDE2Q6IQ49 451 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 CEP85Q6P2H3 762 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 ZNF771Q7L3S4 317 aaPredicted RBP3.98□□□□□ -1.77
LINC01539-203ENST00000589447 RIC3Q7Z5B4 369 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 LAPTM4BQ86VI4 370 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 NUTM2AQ8IVF1 878 aaPredicted RBP3.98□□□□□ -1.77
LINC01539-203ENST00000589447 SIRT2Q8IXJ6 389 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 ZCRB1Q8TBF4 217 aaKnown RBP3.98□□□□□ -1.77
LINC01539-203ENST00000589447 ANKRD7Q92527 254 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 IL17RAQ96F46 866 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 GJD4Q96KN9 370 aaPredicted RBP3.98□□□□□ -1.77
LINC01539-203ENST00000589447 PHOX2BQ99453 314 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 ADAM33Q9BZ11 813 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 TANGO6Q9C0B7 1094 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 SRCIN1Q9C0H9 1055 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 GGNBP2Q9H3C7 697 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 MBIPQ9NS73 344 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 OGFRQ9NZT2 677 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 LIMD1Q9UGP4 676 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.98□□□□□ -1.77
LINC01539-203ENST00000589447 TBX22Q9Y458 520 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.98□□□□□ -1.77
LINC01539-203ENST00000589447 SLIT2O94813 1529 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 LTN1O94822 1766 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 RGPD2P0DJD1 1756 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 COL18A1P39060 1754 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 ARHGEF10O15013 1369 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 RPAP1Q9BWH6 1393 aaPredicted RBP3.98□□□□□ -1.77
LINC01539-203ENST00000589447 SHANK3Q9BYB0 1731 aa3.98□□□□□ -1.77
LINC01539-203ENST00000589447 PARP4Q9UKK3 1724 aaKnown RBP3.98□□□□□ -1.77
LINC01539-203ENST00000589447 SPATA31A6Q5VVP1 1343 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 EDC4Q6P2E9 1401 aaKnown RBP3.97□□□□□ -1.77
LINC01539-203ENST00000589447 RGPD3A6NKT7 1758 aaPredicted RBP3.97□□□□□ -1.77
LINC01539-203ENST00000589447 RGPD4Q7Z3J3 1758 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 A0A0U1RQG5 324 aaPredicted RBP3.97□□□□□ -1.77
LINC01539-203ENST00000589447 BHMG1C9JSJ3 638 aaPredicted RBP3.97□□□□□ -1.77
LINC01539-203ENST00000589447 FYB1O15117 783 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 SPTLC1O15269 473 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 CTIFO43310 598 aaKnown RBP3.97□□□□□ -1.77
LINC01539-203ENST00000589447 OATP04181 439 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 ZNF853P0CG23 659 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 CCDC192P0DO97 292 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 HCLS1P14317 486 aaPredicted RBP3.97□□□□□ -1.77
LINC01539-203ENST00000589447 CCT4P50991 539 aaKnown RBP3.97□□□□□ -1.77
LINC01539-203ENST00000589447 FGD1P98174 961 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 HSP90AB2PQ58FF8 381 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 SOGA3Q5TF21 947 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 TMEM164Q5U3C3 297 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.97□□□□□ -1.77
LINC01539-203ENST00000589447 USP48Q86UV5 1035 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 KIAA1524Q8TCG1 905 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 GPATCH3Q96I76 525 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 SPACA7Q96KW9 195 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 ESYT1Q9BSJ8 1104 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 TSPYL1Q9H0U9 437 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 RABGEF1Q9UJ41 708 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 NSFL1CQ9UNZ2 370 aaKnown RBP3.97□□□□□ -1.77
LINC01539-203ENST00000589447 PAXBP1Q9Y5B6 917 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 AATKQ6ZMQ8 1374 aa3.97□□□□□ -1.77
LINC01539-203ENST00000589447 CCDC171Q6TFL3 1326 aa3.96□□□□□ -1.77
LINC01539-203ENST00000589447 CCDC194A0A1B0GVG4 234 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 ATP9BO43861 1147 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 NEMFO60524 1076 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 LILRB3O75022 631 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 CAVIN2O95810 425 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 F13A1P00488 732 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 ZSCAN22P10073 491 aaPredicted RBP3.96□□□□□ -1.78
LINC01539-203ENST00000589447 PDE1AP54750 535 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 EN1Q05925 392 aaPredicted RBP3.96□□□□□ -1.78
LINC01539-203ENST00000589447 PSME1Q06323 249 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 RBL2Q08999 1139 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 ATP2B3Q16720 1220 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 IFFO2Q5TF58 517 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 SPTY2D1Q68D10 685 aaPredicted RBP3.96□□□□□ -1.78
LINC01539-203ENST00000589447 TMEM132EQ6IEE7 984 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 NYAP1Q6ZVC0 841 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 CCDC112Q8NEF3 446 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 FAM200AQ8TCP9 573 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 ORAI2Q96SN7 254 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 GMLQ99445 158 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 TMX1Q9H3N1 280 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 TTC12Q9H892 705 aaPredicted RBP3.96□□□□□ -1.78
LINC01539-203ENST00000589447 ANO2Q9NQ90 1003 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 SMC3Q9UQE7 1217 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 USP54Q70EL1 1684 aa3.96□□□□□ -1.78
LINC01539-203ENST00000589447 SOS2Q07890 1332 aaPredicted RBP3.95□□□□□ -1.78
LINC01539-203ENST00000589447 TRIM6-TRIM34B2RNG4 842 aa3.95□□□□□ -1.78
LINC01539-203ENST00000589447 KIF2AO00139 706 aaPredicted RBP3.95□□□□□ -1.78
LINC01539-203ENST00000589447 HTATSF1O43719 755 aaKnown RBP3.95□□□□□ -1.78
LINC01539-203ENST00000589447 STX6O43752 255 aa3.95□□□□□ -1.78
LINC01539-203ENST00000589447 AP1G2O75843 785 aa3.95□□□□□ -1.78
LINC01539-203ENST00000589447 ADAMTS2O95450 1211 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms