RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 OR13H1Q8NG92 308 aa10.95□□□□□ -0.66
VMP1-208ENST00000588617 HNRNPLLQ8WVV9 542 aaKnown RBP10.95□□□□□ -0.66
VMP1-208ENST00000588617 RHOVQ96L33 236 aa10.95□□□□□ -0.66
VMP1-208ENST00000588617 CRISPLD1Q9H336 500 aa10.95□□□□□ -0.66
VMP1-208ENST00000588617 UBP1Q9NZI7 540 aa10.95□□□□□ -0.66
VMP1-208ENST00000588617 SALL4Q9UJQ4 1053 aa10.95□□□□□ -0.66
VMP1-208ENST00000588617 KCNH4Q9UQ05 1017 aa10.95□□□□□ -0.66
VMP1-208ENST00000588617 hCG_2014768A0A024R1R8 64 aa10.94□□□□□ -0.66
VMP1-208ENST00000588617 MMP20O60882 483 aa10.94□□□□□ -0.66
VMP1-208ENST00000588617 PGBD3Q8N328 593 aa10.94□□□□□ -0.66
VMP1-208ENST00000588617 CWC22Q9HCG8 908 aaKnown RBP10.94□□□□□ -0.66
VMP1-208ENST00000588617 KCNQ5Q9NR82 932 aa10.94□□□□□ -0.66
VMP1-208ENST00000588617 GREM1O60565 184 aa10.93□□□□□ -0.66
VMP1-208ENST00000588617 GARTP22102 1010 aa10.93□□□□□ -0.66
VMP1-208ENST00000588617 APOBRQ0VD83 1088 aa10.93□□□□□ -0.66
VMP1-208ENST00000588617 CCINQ13939 588 aa10.93□□□□□ -0.66
VMP1-208ENST00000588617 GOLM1Q8NBJ4 401 aa10.93□□□□□ -0.66
VMP1-208ENST00000588617 KCNB2Q92953 911 aa10.93□□□□□ -0.66
VMP1-208ENST00000588617 NKD1Q969G9 470 aa10.93□□□□□ -0.66
VMP1-208ENST00000588617 RNPC3Q96LT9 517 aaKnown RBP10.93□□□□□ -0.66
VMP1-208ENST00000588617 TCF12Q99081 682 aa10.93□□□□□ -0.66
VMP1-208ENST00000588617 CHMP4AQ9BY43 222 aa10.93□□□□□ -0.66
VMP1-208ENST00000588617 CEP44Q9C0F1 390 aa10.93□□□□□ -0.66
VMP1-208ENST00000588617 ZFYVE1Q9HBF4 777 aa10.93□□□□□ -0.66
VMP1-208ENST00000588617 PRKAG3Q9UGI9 489 aa10.93□□□□□ -0.66
VMP1-208ENST00000588617 ST8SIA5O15466 376 aa10.92□□□□□ -0.66
VMP1-208ENST00000588617 CELA3AP09093 270 aa10.92□□□□□ -0.66
VMP1-208ENST00000588617 CAMK2GQ13555 558 aaPredicted RBP10.92□□□□□ -0.66
VMP1-208ENST00000588617 SAMD5Q5TGI4 173 aa10.92□□□□□ -0.66
VMP1-208ENST00000588617 ZNF787Q6DD87 383 aa10.92□□□□□ -0.66
VMP1-208ENST00000588617 NLRP8Q86W28 1048 aa10.92□□□□□ -0.66
VMP1-208ENST00000588617 NCAPG2Q86XI2 1143 aa10.92□□□□□ -0.66
VMP1-208ENST00000588617 DEPDC7Q96QD5 511 aa10.92□□□□□ -0.66
VMP1-208ENST00000588617 OSMRQ99650 979 aa10.92□□□□□ -0.66
VMP1-208ENST00000588617 SRRTQ9BXP5 876 aaKnown RBP10.92□□□□□ -0.66
VMP1-208ENST00000588617 SNTG2Q9NY99 539 aa10.92□□□□□ -0.66
VMP1-208ENST00000588617 CCDC85CA6NKD9 419 aa10.91□□□□□ -0.66
VMP1-208ENST00000588617 ENPP3O14638 875 aa10.91□□□□□ -0.66
VMP1-208ENST00000588617 RARAP10276 462 aa10.91□□□□□ -0.66
VMP1-208ENST00000588617 LMNB2Q03252 620 aa10.91□□□□□ -0.66
VMP1-208ENST00000588617 PCNX4Q63HM2 1172 aa10.91□□□□□ -0.66
VMP1-208ENST00000588617 CCNJLQ8IV13 435 aa10.91□□□□□ -0.66
VMP1-208ENST00000588617 FIGNL2A6NMB9 653 aa10.9□□□□□ -0.66
VMP1-208ENST00000588617 TTLL8A6PVC2 850 aa10.9□□□□□ -0.66
VMP1-208ENST00000588617 KCNQ4P56696 695 aa10.9□□□□□ -0.66
VMP1-208ENST00000588617 SFSWAPQ12872 951 aaKnown RBP10.9□□□□□ -0.66
VMP1-208ENST00000588617 ZCRB1Q8TBF4 217 aaKnown RBP10.9□□□□□ -0.66
VMP1-208ENST00000588617 ZKSCAN3Q9BRR0 538 aa10.9□□□□□ -0.66
VMP1-208ENST00000588617 GSX2Q9BZM3 304 aa10.9□□□□□ -0.66
VMP1-208ENST00000588617 AAASQ9NRG9 546 aa10.9□□□□□ -0.66
VMP1-208ENST00000588617 FAM221BA6H8Z2 402 aa10.89□□□□□ -0.67
VMP1-208ENST00000588617 RAB11FIP3O75154 756 aa10.89□□□□□ -0.67
VMP1-208ENST00000588617 F11P03951 625 aa10.89□□□□□ -0.67
VMP1-208ENST00000588617 PSAPP07602 524 aa10.89□□□□□ -0.67
VMP1-208ENST00000588617 CHMP4BP1P59074 171 aa10.89□□□□□ -0.67
VMP1-208ENST00000588617 ANAPC15P60006 121 aa10.89□□□□□ -0.67
VMP1-208ENST00000588617 GAS2L1Q99501 681 aaPredicted RBP10.89□□□□□ -0.67
VMP1-208ENST00000588617 SMAD7O15105 426 aaKnown RBP10.88□□□□□ -0.67
VMP1-208ENST00000588617 AVPP01185 164 aa10.88□□□□□ -0.67
VMP1-208ENST00000588617 ACPPP15309 386 aa10.88□□□□□ -0.67
VMP1-208ENST00000588617 HYAL2Q12891 473 aa10.88□□□□□ -0.67
VMP1-208ENST00000588617 RASA3Q14644 834 aa10.88□□□□□ -0.67
VMP1-208ENST00000588617 EFHC2Q5JST6 749 aa10.88□□□□□ -0.67
VMP1-208ENST00000588617 TTBK2Q6IQ55 1244 aa10.88□□□□□ -0.67
VMP1-208ENST00000588617 CCDC81Q6ZN84 652 aa10.88□□□□□ -0.67
VMP1-208ENST00000588617 CRIPAKQ8N1N5 446 aa10.88□□□□□ -0.67
VMP1-208ENST00000588617 CNTNAP3BQ96NU0 1288 aa10.88□□□□□ -0.67
VMP1-208ENST00000588617 PNMA5Q96PV4 448 aa10.88□□□□□ -0.67
VMP1-208ENST00000588617 CNTNAP3Q9BZ76 1288 aa10.88□□□□□ -0.67
VMP1-208ENST00000588617 ZFATQ9P243 1243 aa10.88□□□□□ -0.67
VMP1-208ENST00000588617 MARCH6O60337 910 aa10.87□□□□□ -0.67
VMP1-208ENST00000588617 TRPA1O75762 1119 aa10.87□□□□□ -0.67
VMP1-208ENST00000588617 TFE3P19532 575 aaPredicted RBP10.87□□□□□ -0.67
VMP1-208ENST00000588617 CRKP46108 304 aa10.87□□□□□ -0.67
VMP1-208ENST00000588617 GRIA4P48058 902 aa10.87□□□□□ -0.67
VMP1-208ENST00000588617 SPRED3Q2MJR0 410 aa10.87□□□□□ -0.67
VMP1-208ENST00000588617 SEZ6Q53EL9 994 aa10.87□□□□□ -0.67
VMP1-208ENST00000588617 COL13A1Q5TAT6 717 aaPredicted RBP10.87□□□□□ -0.67
VMP1-208ENST00000588617 MRPL14Q6P1L8 145 aaKnown RBP10.87□□□□□ -0.67
VMP1-208ENST00000588617 AGMOQ6ZNB7 445 aa10.87□□□□□ -0.67
VMP1-208ENST00000588617 LRP10Q7Z4F1 713 aa10.87□□□□□ -0.67
VMP1-208ENST00000588617 FILIP1Q7Z7B0 1213 aa10.87□□□□□ -0.67
VMP1-208ENST00000588617 SLITRK4Q8IW52 837 aa10.87□□□□□ -0.67
VMP1-208ENST00000588617 MICAL1Q8TDZ2 1067 aa10.87□□□□□ -0.67
VMP1-208ENST00000588617 NOP58Q9Y2X3 529 aaKnown RBP10.87□□□□□ -0.67
VMP1-208ENST00000588617 DYRK1BQ9Y463 629 aa10.87□□□□□ -0.67
VMP1-208ENST00000588617 TNNI3KQ59H18 835 aa10.86□□□□□ -0.67
VMP1-208ENST00000588617 FAM196AQ6ZSG2 479 aa10.86□□□□□ -0.67
VMP1-208ENST00000588617 SHDQ96IW2 340 aa10.86□□□□□ -0.67
VMP1-208ENST00000588617 NECAB3Q96P71 396 aaPredicted RBP10.86□□□□□ -0.67
VMP1-208ENST00000588617 BRINP2Q9C0B6 783 aa10.86□□□□□ -0.67
VMP1-208ENST00000588617 IFT57Q9NWB7 429 aa10.86□□□□□ -0.67
VMP1-208ENST00000588617 TLR7Q9NYK1 1049 aaKnown RBP10.86□□□□□ -0.67
VMP1-208ENST00000588617 PPT2Q9UMR5 302 aa10.86□□□□□ -0.67
VMP1-208ENST00000588617 ENC1O14682 589 aa10.85□□□□□ -0.67
VMP1-208ENST00000588617 ATXN7O15265 892 aaPredicted RBP10.85□□□□□ -0.67
VMP1-208ENST00000588617 TLR3O15455 904 aaKnown RBP10.85□□□□□ -0.67
VMP1-208ENST00000588617 KIF4AO95239 1232 aa10.85□□□□□ -0.67
VMP1-208ENST00000588617 NFKB1P19838 968 aa10.85□□□□□ -0.67
VMP1-208ENST00000588617 SEC31BQ9NQW1 1179 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms