RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 MYD88Q99836 296 aa14.33□□□□□ -0.12
VPS4B-202ENST00000588059 MXD3Q9BW11 206 aa14.33□□□□□ -0.12
VPS4B-202ENST00000588059 PHAXQ9H814 394 aaKnown RBP14.33□□□□□ -0.12
VPS4B-202ENST00000588059 MKI67P46013 3256 aaKnown RBP14.32□□□□□ -0.12
VPS4B-202ENST00000588059 SASH1O94885 1247 aa14.32□□□□□ -0.12
VPS4B-202ENST00000588059 NF2P35240 595 aa14.32□□□□□ -0.12
VPS4B-202ENST00000588059 PTPN12Q05209 780 aaKnown RBP14.32□□□□□ -0.12
VPS4B-202ENST00000588059 GCC1Q96CN9 775 aa14.32□□□□□ -0.12
VPS4B-202ENST00000588059 MBIPQ9NS73 344 aa14.32□□□□□ -0.12
VPS4B-202ENST00000588059 OGFOD1Q8N543 542 aa14.31□□□□□ -0.12
VPS4B-202ENST00000588059 RUNDC1Q96C34 613 aa14.31□□□□□ -0.12
VPS4B-202ENST00000588059 CWC25Q9NXE8 425 aaPredicted RBP14.31□□□□□ -0.12
VPS4B-202ENST00000588059 MYO3BQ8WXR4 1341 aa14.31□□□□□ -0.12
VPS4B-202ENST00000588059 ECM29Q5VYK3 1845 aa14.3□□□□□ -0.12
VPS4B-202ENST00000588059 CTSWP56202 376 aa14.3□□□□□ -0.12
VPS4B-202ENST00000588059 PRKG1Q13976 671 aa14.3□□□□□ -0.12
VPS4B-202ENST00000588059 RALBP1Q15311 655 aa14.3□□□□□ -0.12
VPS4B-202ENST00000588059 LDLRAD1Q5T700 205 aa14.3□□□□□ -0.12
VPS4B-202ENST00000588059 STRIP1Q5VSL9 837 aa14.3□□□□□ -0.12
VPS4B-202ENST00000588059 SPRYD7Q5W111 196 aa14.3□□□□□ -0.12
VPS4B-202ENST00000588059 ARMC9Q7Z3E5 817 aa14.3□□□□□ -0.12
VPS4B-202ENST00000588059 CDC5LQ99459 802 aaKnown RBP14.3□□□□□ -0.12
VPS4B-202ENST00000588059 KIAA0100Q14667 2235 aaKnown RBP14.29□□□□□ -0.12
VPS4B-202ENST00000588059 HABP4Q5JVS0 413 aaKnown RBP14.29□□□□□ -0.12
VPS4B-202ENST00000588059 APOBEC3FQ8IUX4 373 aaKnown RBP14.29□□□□□ -0.12
VPS4B-202ENST00000588059 FBXW7Q969H0 707 aa14.29□□□□□ -0.12
VPS4B-202ENST00000588059 BSDC1Q9NW68 430 aaPredicted RBP14.29□□□□□ -0.12
VPS4B-202ENST00000588059 MINPP1Q9UNW1 487 aa14.29□□□□□ -0.12
VPS4B-202ENST00000588059 COL1A1P02452 1464 aaPredicted RBP14.29□□□□□ -0.12
VPS4B-202ENST00000588059 SSC5DA1L4H1 1573 aa14.28□□□□□ -0.12
VPS4B-202ENST00000588059 POTEFA5A3E0 1075 aa14.28□□□□□ -0.12
VPS4B-202ENST00000588059 ALDH1A1P00352 501 aa14.28□□□□□ -0.12
VPS4B-202ENST00000588059 ZNF853P0CG23 659 aa14.28□□□□□ -0.12
VPS4B-202ENST00000588059 CCT4P50991 539 aaKnown RBP14.28□□□□□ -0.12
VPS4B-202ENST00000588059 TXNRD3Q86VQ6 643 aa14.28□□□□□ -0.12
VPS4B-202ENST00000588059 ZBED3Q96IU2 234 aaPredicted RBP14.28□□□□□ -0.12
VPS4B-202ENST00000588059 METTL22Q9BUU2 404 aaPredicted RBP14.28□□□□□ -0.12
VPS4B-202ENST00000588059 COA1Q9GZY4 146 aa14.28□□□□□ -0.12
VPS4B-202ENST00000588059 ANGEL1Q9UNK9 670 aaKnown RBP14.28□□□□□ -0.12
VPS4B-202ENST00000588059 TRIM17Q9Y577 477 aa14.28□□□□□ -0.12
VPS4B-202ENST00000588059 MMP14P50281 582 aa14.27□□□□□ -0.13
VPS4B-202ENST00000588059 OTOP1Q7RTM1 612 aa14.27□□□□□ -0.13
VPS4B-202ENST00000588059 IFNL1Q8IU54 200 aa14.27□□□□□ -0.13
VPS4B-202ENST00000588059 TTLL11Q8NHH1 800 aa14.27□□□□□ -0.13
VPS4B-202ENST00000588059 GREM2Q9H772 168 aa14.27□□□□□ -0.13
VPS4B-202ENST00000588059 FZD1Q9UP38 647 aa14.27□□□□□ -0.13
VPS4B-202ENST00000588059 CENPFP49454 3210 aa14.27□□□□□ -0.13
VPS4B-202ENST00000588059 MYBBP1AQ9BQG0 1328 aaKnown RBP14.26□□□□□ -0.13
VPS4B-202ENST00000588059 MANSC4A6NHS7 340 aaPredicted RBP14.26□□□□□ -0.13
VPS4B-202ENST00000588059 ELL2O00472 640 aaPredicted RBP14.26□□□□□ -0.13
VPS4B-202ENST00000588059 KLRK1P26718 216 aa14.26□□□□□ -0.13
VPS4B-202ENST00000588059 KIAA0825Q8IV33 1275 aa14.26□□□□□ -0.13
VPS4B-202ENST00000588059 OTOFQ9HC10 1997 aa14.25□□□□□ -0.13
VPS4B-202ENST00000588059 A0A1B0GUL6 1792 aa14.25□□□□□ -0.13
VPS4B-202ENST00000588059 IGF2BP3O00425 579 aaKnown RBP eCLIP14.25□□□□□ -0.13
VPS4B-202ENST00000588059 IGKV5-2P06315 115 aa14.25□□□□□ -0.13
VPS4B-202ENST00000588059 WDR43Q15061 677 aaKnown RBP eCLIP14.25□□□□□ -0.13
VPS4B-202ENST00000588059 MAP3K11Q16584 847 aa14.25□□□□□ -0.13
VPS4B-202ENST00000588059 INTS3Q68E01 1043 aaKnown RBP14.25□□□□□ -0.13
VPS4B-202ENST00000588059 TTLL5Q6EMB2 1281 aa14.25□□□□□ -0.13
VPS4B-202ENST00000588059 WNK4Q96J92 1243 aa14.25□□□□□ -0.13
VPS4B-202ENST00000588059 CLMNQ96JQ2 1002 aa14.25□□□□□ -0.13
VPS4B-202ENST00000588059 MAP3K2Q9Y2U5 619 aa14.25□□□□□ -0.13
VPS4B-202ENST00000588059 BRCA2P51587 3418 aa14.25□□□□□ -0.13
VPS4B-202ENST00000588059 DDX58O95786 925 aaKnown RBP14.24□□□□□ -0.13
VPS4B-202ENST00000588059 ZBTB48P10074 688 aaPredicted RBP14.24□□□□□ -0.13
VPS4B-202ENST00000588059 INHBEP58166 350 aa14.24□□□□□ -0.13
VPS4B-202ENST00000588059 DEFB129Q9H1M3 183 aa14.24□□□□□ -0.13
VPS4B-202ENST00000588059 IFT57Q9NWB7 429 aa14.24□□□□□ -0.13
VPS4B-202ENST00000588059 ADAMTS8Q9UP79 889 aa14.24□□□□□ -0.13
VPS4B-202ENST00000588059 LEMD3Q9Y2U8 911 aa14.24□□□□□ -0.13
VPS4B-202ENST00000588059 ZNF804BA4D1E1 1349 aa14.23□□□□□ -0.13
VPS4B-202ENST00000588059 GTF2IP78347 998 aa14.23□□□□□ -0.13
VPS4B-202ENST00000588059 C8orf58Q8NAV2 365 aa14.23□□□□□ -0.13
VPS4B-202ENST00000588059 SLC10A4Q96EP9 437 aa14.23□□□□□ -0.13
VPS4B-202ENST00000588059 PTPN22Q9Y2R2 807 aa14.23□□□□□ -0.13
VPS4B-202ENST00000588059 GNAI1P63096 354 aa14.22□□□□□ -0.13
VPS4B-202ENST00000588059 CD99L2Q8TCZ2 262 aa14.22□□□□□ -0.13
VPS4B-202ENST00000588059 ARMC5Q96C12 935 aa14.22□□□□□ -0.13
VPS4B-202ENST00000588059 ERO1AQ96HE7 468 aa14.22□□□□□ -0.13
VPS4B-202ENST00000588059 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.22□□□□□ -0.13
VPS4B-202ENST00000588059 PPP2R3BQ9Y5P8 575 aa14.22□□□□□ -0.13
VPS4B-202ENST00000588059 PI4KAP2A4QPH2 592 aa14.21□□□□□ -0.13
VPS4B-202ENST00000588059 PPP1R12BO60237 982 aaPredicted RBP14.21□□□□□ -0.13
VPS4B-202ENST00000588059 GJA5P36382 358 aa14.21□□□□□ -0.13
VPS4B-202ENST00000588059 IGHMBP2P38935 993 aaKnown RBP14.21□□□□□ -0.13
VPS4B-202ENST00000588059 FXR1P51114 621 aaKnown RBP eCLIP14.21□□□□□ -0.13
VPS4B-202ENST00000588059 CAP1Q01518 475 aa14.21□□□□□ -0.13
VPS4B-202ENST00000588059 CRHR2Q13324 411 aa14.21□□□□□ -0.13
VPS4B-202ENST00000588059 DLGAP5Q15398 846 aa14.21□□□□□ -0.13
VPS4B-202ENST00000588059 CWF19L2Q2TBE0 894 aaKnown RBP14.21□□□□□ -0.13
VPS4B-202ENST00000588059 CCDC30Q5VVM6 783 aa14.21□□□□□ -0.13
VPS4B-202ENST00000588059 KSR2Q6VAB6 950 aa14.21□□□□□ -0.13
VPS4B-202ENST00000588059 CERS5Q8N5B7 392 aa14.21□□□□□ -0.13
VPS4B-202ENST00000588059 PI4KAP1Q8N8J0 262 aa14.21□□□□□ -0.13
VPS4B-202ENST00000588059 MTMR14Q8NCE2 650 aa14.21□□□□□ -0.13
VPS4B-202ENST00000588059 PCDHAC2Q9Y5I4 1007 aa14.21□□□□□ -0.13
VPS4B-202ENST00000588059 IRS2Q9Y4H2 1338 aa14.2□□□□□ -0.14
VPS4B-202ENST00000588059 NEURL1BA8MQ27 555 aa14.2□□□□□ -0.14
VPS4B-202ENST00000588059 EN2P19622 333 aaPredicted RBP14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms