RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 SASH1O94885 1247 aa7.51□□□□□ -1.21
LIG3-206ENST00000586058 IFIT1P09914 478 aaKnown RBP7.51□□□□□ -1.21
LIG3-206ENST00000586058 PYGBP11216 843 aa7.51□□□□□ -1.21
LIG3-206ENST00000586058 GSPT1P15170 499 aaKnown RBP7.51□□□□□ -1.21
LIG3-206ENST00000586058 SDSP20132 328 aa7.51□□□□□ -1.21
LIG3-206ENST00000586058 KCNJ4P48050 445 aa7.51□□□□□ -1.21
LIG3-206ENST00000586058 PUM3Q15397 648 aaKnown RBP7.51□□□□□ -1.21
LIG3-206ENST00000586058 ATP2B3Q16720 1220 aa7.51□□□□□ -1.21
LIG3-206ENST00000586058 DCAF8Q5TAQ9 597 aa7.51□□□□□ -1.21
LIG3-206ENST00000586058 KIAA1211Q6ZU35 1233 aa7.51□□□□□ -1.21
LIG3-206ENST00000586058 C16orf71Q8IYS4 520 aaPredicted RBP7.51□□□□□ -1.21
LIG3-206ENST00000586058 OTUD7AQ8TE49 926 aaPredicted RBP7.51□□□□□ -1.21
LIG3-206ENST00000586058 EVI5LQ96CN4 794 aa7.51□□□□□ -1.21
LIG3-206ENST00000586058 ZNF594Q96JF6 807 aaPredicted RBP7.51□□□□□ -1.21
LIG3-206ENST00000586058 FSD1Q9BTV5 496 aa7.51□□□□□ -1.21
LIG3-206ENST00000586058 CCDC8Q9H0W5 538 aaPredicted RBP7.51□□□□□ -1.21
LIG3-206ENST00000586058 RGS17Q9UGC6 210 aaPredicted RBP7.51□□□□□ -1.21
LIG3-206ENST00000586058 LAMB1P07942 1786 aa7.51□□□□□ -1.21
LIG3-206ENST00000586058 A0A1B0GUL7 405 aa7.5□□□□□ -1.21
LIG3-206ENST00000586058 GYS1P13807 737 aa7.5□□□□□ -1.21
LIG3-206ENST00000586058 BECN1Q14457 450 aa7.5□□□□□ -1.21
LIG3-206ENST00000586058 NFIXQ14938 502 aa7.5□□□□□ -1.21
LIG3-206ENST00000586058 SF3B3Q15393 1217 aaKnown RBP7.5□□□□□ -1.21
LIG3-206ENST00000586058 TBC1D9Q6ZT07 1266 aa7.5□□□□□ -1.21
LIG3-206ENST00000586058 EAF2Q96CJ1 260 aaPredicted RBP7.5□□□□□ -1.21
LIG3-206ENST00000586058 DNAJC2Q99543 621 aaKnown RBP7.5□□□□□ -1.21
LIG3-206ENST00000586058 MYH8P13535 1937 aa7.5□□□□□ -1.21
LIG3-206ENST00000586058 RAD50Q92878 1312 aa7.5□□□□□ -1.21
LIG3-206ENST00000586058 PDE8BO95263 885 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 SERPINB2P05120 415 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 UQCRFS1P1P0C7P4 283 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 ATP5JP18859 108 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 VASPP50552 380 aaPredicted RBP7.49□□□□□ -1.21
LIG3-206ENST00000586058 EN1Q05925 392 aaPredicted RBP7.49□□□□□ -1.21
LIG3-206ENST00000586058 TTF1Q15361 905 aaPredicted RBP7.49□□□□□ -1.21
LIG3-206ENST00000586058 LRRC24Q50LG9 513 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 SLC10A5Q5PT55 438 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 TSHZ3Q63HK5 1081 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 ZSCAN25Q6NSZ9 544 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 ATG9AQ7Z3C6 839 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 TMC4Q7Z404 712 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 TICAM2Q86XR7 235 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 VPS37DQ86XT2 251 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 PI4K2BQ8TCG2 481 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.49□□□□□ -1.21
LIG3-206ENST00000586058 LPIN2Q92539 896 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 FAM163AQ96GL9 167 aaPredicted RBP7.49□□□□□ -1.21
LIG3-206ENST00000586058 RBM17Q96I25 401 aaKnown RBP7.49□□□□□ -1.21
LIG3-206ENST00000586058 C22orf23Q9BZE7 217 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.49□□□□□ -1.21
LIG3-206ENST00000586058 ANKRD2Q9GZV1 360 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 BCL2L12Q9HB09 334 aa7.49□□□□□ -1.21
LIG3-206ENST00000586058 GNL3LQ9NVN8 582 aaKnown RBP7.49□□□□□ -1.21
LIG3-206ENST00000586058 PDE6BP35913 854 aa7.48□□□□□ -1.21
LIG3-206ENST00000586058 IRX5P78411 483 aaPredicted RBP7.48□□□□□ -1.21
LIG3-206ENST00000586058 EZH2Q15910 746 aaKnown RBP7.48□□□□□ -1.21
LIG3-206ENST00000586058 SLC15A2Q16348 729 aa7.48□□□□□ -1.21
LIG3-206ENST00000586058 ZNF827Q17R98 1081 aa7.48□□□□□ -1.21
LIG3-206ENST00000586058 CAVIN4Q5BKX8 364 aa7.48□□□□□ -1.21
LIG3-206ENST00000586058 PRR5LQ6MZQ0 368 aa7.48□□□□□ -1.21
LIG3-206ENST00000586058 SYNE4Q8N205 404 aa7.48□□□□□ -1.21
LIG3-206ENST00000586058 NAV1Q8NEY1 1877 aa7.48□□□□□ -1.21
LIG3-206ENST00000586058 DBNDD2Q9BQY9 259 aa7.48□□□□□ -1.21
LIG3-206ENST00000586058 BOLA2Q9H3K6 86 aa7.48□□□□□ -1.21
LIG3-206ENST00000586058 ANO2Q9NQ90 1003 aa7.48□□□□□ -1.21
LIG3-206ENST00000586058 DBNLQ9UJU6 430 aaKnown RBP7.48□□□□□ -1.21
LIG3-206ENST00000586058 MYH2Q9UKX2 1941 aa7.48□□□□□ -1.21
LIG3-206ENST00000586058 PNPLA7Q6ZV29 1317 aa7.48□□□□□ -1.21
LIG3-206ENST00000586058 PSME4Q14997 1843 aa7.48□□□□□ -1.21
LIG3-206ENST00000586058 LTBP1Q14766 1721 aa7.47□□□□□ -1.21
LIG3-206ENST00000586058 EPB41L2O43491 1005 aaKnown RBP7.47□□□□□ -1.21
LIG3-206ENST00000586058 FRAT2O75474 233 aaPredicted RBP7.47□□□□□ -1.21
LIG3-206ENST00000586058 MAP4K4O95819 1239 aaPredicted RBP7.47□□□□□ -1.21
LIG3-206ENST00000586058 CHRNDQ07001 517 aa7.47□□□□□ -1.21
LIG3-206ENST00000586058 GRAPQ13588 217 aa7.47□□□□□ -1.21
LIG3-206ENST00000586058 GRAPLQ8TC17 118 aaPredicted RBP7.47□□□□□ -1.21
LIG3-206ENST00000586058 XAGE2Q96GT9 111 aa7.47□□□□□ -1.21
LIG3-206ENST00000586058 TBC1D32Q96NH3 1257 aa7.47□□□□□ -1.21
LIG3-206ENST00000586058 HAUS7Q99871 368 aa7.47□□□□□ -1.21
LIG3-206ENST00000586058 PUS3Q9BZE2 481 aaKnown RBP7.47□□□□□ -1.21
LIG3-206ENST00000586058 SEC31BQ9NQW1 1179 aa7.47□□□□□ -1.21
LIG3-206ENST00000586058 BSDC1Q9NW68 430 aaPredicted RBP7.47□□□□□ -1.21
LIG3-206ENST00000586058 PAG1Q9NWQ8 432 aa7.47□□□□□ -1.21
LIG3-206ENST00000586058 TLR7Q9NYK1 1049 aaKnown RBP7.47□□□□□ -1.21
LIG3-206ENST00000586058 PCDHB8Q9UN66 801 aa7.47□□□□□ -1.21
LIG3-206ENST00000586058 RIPOR2Q9Y4F9 1068 aa7.47□□□□□ -1.21
LIG3-206ENST00000586058 ECM29Q5VYK3 1845 aa7.47□□□□□ -1.21
LIG3-206ENST00000586058 BRCA1P38398 1863 aaKnown RBP7.47□□□□□ -1.21
LIG3-206ENST00000586058 FOCADQ5VW36 1801 aa7.46□□□□□ -1.21
LIG3-206ENST00000586058 POLRMTO00411 1230 aaKnown RBP7.46□□□□□ -1.22
LIG3-206ENST00000586058 ZFYP08048 801 aaPredicted RBP7.46□□□□□ -1.22
LIG3-206ENST00000586058 MMP10P09238 476 aa7.46□□□□□ -1.22
LIG3-206ENST00000586058 PLCG2P16885 1265 aa7.46□□□□□ -1.22
LIG3-206ENST00000586058 CHMLP26374 656 aa7.46□□□□□ -1.22
LIG3-206ENST00000586058 RPS8P62241 208 aaKnown RBP7.46□□□□□ -1.22
LIG3-206ENST00000586058 FKBP4Q02790 459 aaKnown RBP eCLIP7.46□□□□□ -1.22
LIG3-206ENST00000586058 UBE4AQ14139 1066 aa7.46□□□□□ -1.22
LIG3-206ENST00000586058 RNF20Q5VTR2 975 aa7.46□□□□□ -1.22
LIG3-206ENST00000586058 SMIM5Q71RC9 77 aa7.46□□□□□ -1.22
LIG3-206ENST00000586058 COL23A1Q86Y22 540 aaPredicted RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms