RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 UQCRFS1P1P0C7P4 283 aa13.45□□□□□ -0.26
LIG3-204ENST00000585740 TTF1Q15361 905 aaPredicted RBP13.45□□□□□ -0.26
LIG3-204ENST00000585740 CCDC152Q4G0S7 254 aa13.45□□□□□ -0.26
LIG3-204ENST00000585740 SUSD4Q5VX71 490 aa13.45□□□□□ -0.26
LIG3-204ENST00000585740 ZSCAN25Q6NSZ9 544 aa13.45□□□□□ -0.26
LIG3-204ENST00000585740 CCDC85AQ96PX6 553 aaPredicted RBP13.45□□□□□ -0.26
LIG3-204ENST00000585740 ISY1Q9ULR0 285 aaKnown RBP13.45□□□□□ -0.26
LIG3-204ENST00000585740 AKAP11Q9UKA4 1901 aa13.45□□□□□ -0.26
LIG3-204ENST00000585740 WDR33Q9C0J8 1336 aaKnown RBP13.44□□□□□ -0.26
LIG3-204ENST00000585740 PDE8BO95263 885 aa13.44□□□□□ -0.26
LIG3-204ENST00000585740 BRD1O95696 1058 aa13.44□□□□□ -0.26
LIG3-204ENST00000585740 ADCK5Q3MIX3 580 aa13.44□□□□□ -0.26
LIG3-204ENST00000585740 NOL8Q76FK4 1167 aaKnown RBP13.44□□□□□ -0.26
LIG3-204ENST00000585740 POTEDQ86YR6 584 aa13.44□□□□□ -0.26
LIG3-204ENST00000585740 SYNE4Q8N205 404 aa13.44□□□□□ -0.26
LIG3-204ENST00000585740 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.44□□□□□ -0.26
LIG3-204ENST00000585740 NIP7Q9Y221 180 aaKnown RBP eCLIP13.44□□□□□ -0.26
LIG3-204ENST00000585740 PLSCR1O15162 318 aa13.43□□□□□ -0.26
LIG3-204ENST00000585740 LY75O60449 1722 aa13.43□□□□□ -0.26
LIG3-204ENST00000585740 NTSR2O95665 410 aa13.43□□□□□ -0.26
LIG3-204ENST00000585740 HMGB1P09429 215 aaKnown RBP13.43□□□□□ -0.26
LIG3-204ENST00000585740 SLC5A1P13866 664 aa13.43□□□□□ -0.26
LIG3-204ENST00000585740 RPS6KB1P23443 525 aa13.43□□□□□ -0.26
LIG3-204ENST00000585740 ADORA1P30542 326 aa13.43□□□□□ -0.26
LIG3-204ENST00000585740 IGHMBP2P38935 993 aaKnown RBP13.43□□□□□ -0.26
LIG3-204ENST00000585740 PTGER2P43116 358 aa13.43□□□□□ -0.26
LIG3-204ENST00000585740 PUM3Q15397 648 aaKnown RBP13.43□□□□□ -0.26
LIG3-204ENST00000585740 VGLL2Q8N8G2 317 aa13.43□□□□□ -0.26
LIG3-204ENST00000585740 LPIN2Q92539 896 aa13.43□□□□□ -0.26
LIG3-204ENST00000585740 MPHOSPH8Q99549 860 aa13.43□□□□□ -0.26
LIG3-204ENST00000585740 SMC3Q9UQE7 1217 aa13.43□□□□□ -0.26
LIG3-204ENST00000585740 ATF5Q9Y2D1 282 aaPredicted RBP13.43□□□□□ -0.26
LIG3-204ENST00000585740 SBF2Q86WG5 1849 aa13.43□□□□□ -0.26
LIG3-204ENST00000585740 LAMA4Q16363 1823 aa13.42□□□□□ -0.26
LIG3-204ENST00000585740 FKBP4Q02790 459 aaKnown RBP eCLIP13.42□□□□□ -0.26
LIG3-204ENST00000585740 LINC00116Q8NCU8 138 aa13.42□□□□□ -0.26
LIG3-204ENST00000585740 SYT17Q9BSW7 474 aa13.42□□□□□ -0.26
LIG3-204ENST00000585740 FHDC1Q9C0D6 1143 aaPredicted RBP13.42□□□□□ -0.26
LIG3-204ENST00000585740 BCL11BQ9C0K0 894 aaPredicted RBP13.42□□□□□ -0.26
LIG3-204ENST00000585740 CTNNA3Q9UI47 895 aa13.42□□□□□ -0.26
LIG3-204ENST00000585740 ZDHHC9Q9Y397 364 aa13.42□□□□□ -0.26
LIG3-204ENST00000585740 NDUFB9Q9Y6M9 179 aa13.42□□□□□ -0.26
LIG3-204ENST00000585740 TAF1LQ8IZX4 1826 aa13.41□□□□□ -0.26
LIG3-204ENST00000585740 ARID4AP29374 1257 aaPredicted RBP13.41□□□□□ -0.26
LIG3-204ENST00000585740 KLHL40Q2TBA0 621 aa13.41□□□□□ -0.26
LIG3-204ENST00000585740 MCTP1Q6DN14 999 aa13.41□□□□□ -0.26
LIG3-204ENST00000585740 APPBP2Q92624 585 aa13.41□□□□□ -0.26
LIG3-204ENST00000585740 CHMP4CQ96CF2 233 aa13.41□□□□□ -0.26
LIG3-204ENST00000585740 NEK1Q96PY6 1258 aa13.41□□□□□ -0.26
LIG3-204ENST00000585740 CDC5LQ99459 802 aaKnown RBP13.41□□□□□ -0.26
LIG3-204ENST00000585740 NYXQ9GZU5 481 aa13.41□□□□□ -0.26
LIG3-204ENST00000585740 MAST3O60307 1309 aa13.4□□□□□ -0.26
LIG3-204ENST00000585740 CASZ1Q86V15 1759 aa13.4□□□□□ -0.26
LIG3-204ENST00000585740 COL24A1Q17RW2 1714 aa13.4□□□□□ -0.26
LIG3-204ENST00000585740 RPS6KA4O75676 772 aa13.4□□□□□ -0.26
LIG3-204ENST00000585740 HCLS1P14317 486 aaPredicted RBP13.4□□□□□ -0.26
LIG3-204ENST00000585740 FGFR2P21802 821 aa13.4□□□□□ -0.26
LIG3-204ENST00000585740 PKP1Q13835 747 aa13.4□□□□□ -0.26
LIG3-204ENST00000585740 CCDC129Q6ZRS4 1044 aa13.4□□□□□ -0.26
LIG3-204ENST00000585740 PTF1AQ7RTS3 328 aa13.4□□□□□ -0.26
LIG3-204ENST00000585740 SEC62Q99442 399 aaKnown RBP13.4□□□□□ -0.26
LIG3-204ENST00000585740 ATP6V1DQ9Y5K8 247 aa13.4□□□□□ -0.26
LIG3-204ENST00000585740 HSPD1P10809 573 aaKnown RBP13.39□□□□□ -0.27
LIG3-204ENST00000585740 CPA1P15085 419 aa13.39□□□□□ -0.27
LIG3-204ENST00000585740 HMGB2P26583 209 aaKnown RBP13.39□□□□□ -0.27
LIG3-204ENST00000585740 ZAP70P43403 619 aa13.39□□□□□ -0.27
LIG3-204ENST00000585740 PROM2Q8N271 834 aa13.39□□□□□ -0.27
LIG3-204ENST00000585740 NARFQ9UHQ1 456 aa13.39□□□□□ -0.27
LIG3-204ENST00000585740 DOCK2Q92608 1830 aa13.39□□□□□ -0.27
LIG3-204ENST00000585740 A0A1B0GUL6 1792 aa13.38□□□□□ -0.27
LIG3-204ENST00000585740 GOLGA6L3A6NEY3 463 aa13.38□□□□□ -0.27
LIG3-204ENST00000585740 CYP21A2P08686 494 aa13.38□□□□□ -0.27
LIG3-204ENST00000585740 PDCP20941 246 aa13.38□□□□□ -0.27
LIG3-204ENST00000585740 MCAMP43121 646 aa13.38□□□□□ -0.27
LIG3-204ENST00000585740 UBE3CQ15386 1083 aa13.38□□□□□ -0.27
LIG3-204ENST00000585740 SF3B3Q15393 1217 aaKnown RBP13.38□□□□□ -0.27
LIG3-204ENST00000585740 WASHC4Q2M389 1173 aa13.38□□□□□ -0.27
LIG3-204ENST00000585740 SLC10A5Q5PT55 438 aa13.38□□□□□ -0.27
LIG3-204ENST00000585740 CCDC83Q8IWF9 413 aa13.38□□□□□ -0.27
LIG3-204ENST00000585740 LMBRD1Q9NUN5 540 aa13.38□□□□□ -0.27
LIG3-204ENST00000585740 DDX49Q9Y6V7 483 aaKnown RBP13.38□□□□□ -0.27
LIG3-204ENST00000585740 FAM177BA6PVY3 158 aa13.37□□□□□ -0.27
LIG3-204ENST00000585740 M0R2C6 588 aa13.37□□□□□ -0.27
LIG3-204ENST00000585740 STX6O43752 255 aa13.37□□□□□ -0.27
LIG3-204ENST00000585740 MBD3O95983 291 aa13.37□□□□□ -0.27
LIG3-204ENST00000585740 ME3Q16798 604 aa13.37□□□□□ -0.27
LIG3-204ENST00000585740 CCDC102BQ68D86 513 aa13.37□□□□□ -0.27
LIG3-204ENST00000585740 DHX32Q7L7V1 743 aaKnown RBP13.37□□□□□ -0.27
LIG3-204ENST00000585740 OSBP2Q969R2 916 aa13.37□□□□□ -0.27
LIG3-204ENST00000585740 CCNL1Q9UK58 526 aaPredicted RBP13.37□□□□□ -0.27
LIG3-204ENST00000585740 RTCBQ9Y3I0 505 aaKnown RBP13.37□□□□□ -0.27
LIG3-204ENST00000585740 RGPD3A6NKT7 1758 aaPredicted RBP13.36□□□□□ -0.27
LIG3-204ENST00000585740 RGPD4Q7Z3J3 1758 aa13.36□□□□□ -0.27
LIG3-204ENST00000585740 FSD2A1L4K1 749 aa13.36□□□□□ -0.27
LIG3-204ENST00000585740 ZPR1O75312 459 aa13.36□□□□□ -0.27
LIG3-204ENST00000585740 ZSCAN22P10073 491 aaPredicted RBP13.36□□□□□ -0.27
LIG3-204ENST00000585740 GJB2P29033 226 aa13.36□□□□□ -0.27
LIG3-204ENST00000585740 ADD2P35612 726 aa13.36□□□□□ -0.27
LIG3-204ENST00000585740 TOB2Q14106 344 aaPredicted RBP13.36□□□□□ -0.27
LIG3-204ENST00000585740 SCARF1Q14162 830 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms