RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 THSD7BQ9C0I4 1608 aa26.05■■□□□ 1.76
SHMT1-209ENST00000582653 MED23Q9ULK4 1368 aa26.05■■□□□ 1.76
SHMT1-209ENST00000582653 CACNA1FO60840 1977 aa26.04■■□□□ 1.76
SHMT1-209ENST00000582653 ADM5C9JUS6 153 aa26.04■■□□□ 1.76
SHMT1-209ENST00000582653 SCARF1Q14162 830 aa26.04■■□□□ 1.76
SHMT1-209ENST00000582653 SULF1Q8IWU6 871 aa26.04■■□□□ 1.76
SHMT1-209ENST00000582653 C2orf69Q8N8R5 385 aa26.04■■□□□ 1.76
SHMT1-209ENST00000582653 ANKRD2Q9GZV1 360 aa26.04■■□□□ 1.76
SHMT1-209ENST00000582653 GBA2Q9HCG7 927 aaPredicted RBP26.04■■□□□ 1.76
SHMT1-209ENST00000582653 SPEF2Q9C093 1822 aa26.04■■□□□ 1.76
SHMT1-209ENST00000582653 MPHOSPH8Q99549 860 aa26.03■■□□□ 1.76
SHMT1-209ENST00000582653 COA1Q9GZY4 146 aa26.03■■□□□ 1.76
SHMT1-209ENST00000582653 MYOZ2Q9NPC6 264 aa26.03■■□□□ 1.76
SHMT1-209ENST00000582653 POLR2AP24928 1970 aaKnown RBP26.03■■□□□ 1.76
SHMT1-209ENST00000582653 CA12O43570 354 aa26.02■■□□□ 1.76
SHMT1-209ENST00000582653 BRPF1P55201 1214 aaPredicted RBP26.02■■□□□ 1.76
SHMT1-209ENST00000582653 NOGQ13253 232 aa26.02■■□□□ 1.76
SHMT1-209ENST00000582653 GGA3Q9NZ52 723 aa26.02■■□□□ 1.76
SHMT1-209ENST00000582653 ASTN2O75129 1339 aaPredicted RBP26.01■■□□□ 1.75
SHMT1-209ENST00000582653 RGMBQ6NW40 437 aa26.01■■□□□ 1.75
SHMT1-209ENST00000582653 ZNF804BA4D1E1 1349 aa26■■□□□ 1.75
SHMT1-209ENST00000582653 FOXO4P98177 505 aa26■■□□□ 1.75
SHMT1-209ENST00000582653 DACT2Q5SW24 774 aa26■■□□□ 1.75
SHMT1-209ENST00000582653 STRIP1Q5VSL9 837 aa26■■□□□ 1.75
SHMT1-209ENST00000582653 ANGEL2Q5VTE6 544 aaKnown RBP26■■□□□ 1.75
SHMT1-209ENST00000582653 TXNRD3Q86VQ6 643 aa26■■□□□ 1.75
SHMT1-209ENST00000582653 ANKRD18BA2A2Z9 1011 aa25.99■■□□□ 1.75
SHMT1-209ENST00000582653 SLC4A10Q6U841 1118 aa25.99■■□□□ 1.75
SHMT1-209ENST00000582653 CCDC102AQ96A19 550 aa25.99■■□□□ 1.75
SHMT1-209ENST00000582653 MMP14P50281 582 aa25.98■■□□□ 1.75
SHMT1-209ENST00000582653 PSME4Q14997 1843 aa25.98■■□□□ 1.75
SHMT1-209ENST00000582653 MYO3BQ8WXR4 1341 aa25.97■■□□□ 1.75
SHMT1-209ENST00000582653 PITPNM2Q9BZ72 1349 aa25.97■■□□□ 1.75
SHMT1-209ENST00000582653 EPHA10Q5JZY3 1008 aa25.97■■□□□ 1.75
SHMT1-209ENST00000582653 OGFOD1Q8N543 542 aa25.97■■□□□ 1.75
SHMT1-209ENST00000582653 CDCA5Q96FF9 252 aa25.97■■□□□ 1.75
SHMT1-209ENST00000582653 ZIC5Q96T25 663 aa25.97■■□□□ 1.75
SHMT1-209ENST00000582653 FAM155AB1AL88 458 aaPredicted RBP25.96■■□□□ 1.75
SHMT1-209ENST00000582653 CHRNDQ07001 517 aa25.96■■□□□ 1.75
SHMT1-209ENST00000582653 TTLL5Q6EMB2 1281 aa25.96■■□□□ 1.75
SHMT1-209ENST00000582653 MXD3Q9BW11 206 aa25.96■■□□□ 1.75
SHMT1-209ENST00000582653 CHMP3Q9Y3E7 222 aa25.96■■□□□ 1.75
SHMT1-209ENST00000582653 GRM8O00222 908 aa25.95■■□□□ 1.74
SHMT1-209ENST00000582653 KLRK1P26718 216 aa25.95■■□□□ 1.74
SHMT1-209ENST00000582653 ZNF157P51786 506 aaPredicted RBP25.95■■□□□ 1.74
SHMT1-209ENST00000582653 IFIT5Q13325 482 aaKnown RBP25.95■■□□□ 1.74
SHMT1-209ENST00000582653 LMBR1LQ6UX01 489 aa25.95■■□□□ 1.74
SHMT1-209ENST00000582653 TSKSQ9UJT2 592 aa25.95■■□□□ 1.74
SHMT1-209ENST00000582653 NBPF9Q3BBW0 867 aa25.94■■□□□ 1.74
SHMT1-209ENST00000582653 MRPL50Q8N5N7 158 aaKnown RBP25.94■■□□□ 1.74
SHMT1-209ENST00000582653 C9orf78Q9NZ63 289 aaPredicted RBP25.94■■□□□ 1.74
SHMT1-209ENST00000582653 E9PSI1 815 aa25.93■■□□□ 1.74
SHMT1-209ENST00000582653 SNAP23O00161 211 aa25.93■■□□□ 1.74
SHMT1-209ENST00000582653 KCNJ4P48050 445 aa25.93■■□□□ 1.74
SHMT1-209ENST00000582653 HELBQ8NG08 1087 aaPredicted RBP25.93■■□□□ 1.74
SHMT1-209ENST00000582653 FBXW7Q969H0 707 aa25.93■■□□□ 1.74
SHMT1-209ENST00000582653 CDCA7LQ96GN5 454 aa25.93■■□□□ 1.74
SHMT1-209ENST00000582653 SRCIN1Q9C0H9 1055 aa25.93■■□□□ 1.74
SHMT1-209ENST00000582653 WNT10BO00744 389 aa25.92■■□□□ 1.74
SHMT1-209ENST00000582653 TAF5LO75529 589 aa25.92■■□□□ 1.74
SHMT1-209ENST00000582653 ALDH1L1O75891 902 aa25.92■■□□□ 1.74
SHMT1-209ENST00000582653 FKBP1BP68106 108 aa25.92■■□□□ 1.74
SHMT1-209ENST00000582653 SLFN5Q08AF3 891 aa25.92■■□□□ 1.74
SHMT1-209ENST00000582653 C15orf52Q6ZUT6 534 aaKnown RBP25.92■■□□□ 1.74
SHMT1-209ENST00000582653 ABHD8Q96I13 439 aa25.92■■□□□ 1.74
SHMT1-209ENST00000582653 ZNF594Q96JF6 807 aaPredicted RBP25.92■■□□□ 1.74
SHMT1-209ENST00000582653 CD209Q9NNX6 404 aa25.92■■□□□ 1.74
SHMT1-209ENST00000582653 KIF23Q02241 960 aaPredicted RBP25.91■■□□□ 1.74
SHMT1-209ENST00000582653 GTF2IP78347 998 aa25.9■■□□□ 1.74
SHMT1-209ENST00000582653 CCDC57Q2TAC2 916 aa25.9■■□□□ 1.74
SHMT1-209ENST00000582653 IRS2Q9Y4H2 1338 aa25.89■■□□□ 1.74
SHMT1-209ENST00000582653 SSH1Q8WYL5 1049 aa25.89■■□□□ 1.74
SHMT1-209ENST00000582653 SLC10A3P09131 477 aa25.88■■□□□ 1.73
SHMT1-209ENST00000582653 NBPF7P0C2Y1 421 aaPredicted RBP25.88■■□□□ 1.73
SHMT1-209ENST00000582653 LDHAL6AQ6ZMR3 332 aa25.88■■□□□ 1.73
SHMT1-209ENST00000582653 SUCLG2Q96I99 432 aa25.88■■□□□ 1.73
SHMT1-209ENST00000582653 HDAC9Q9UKV0 1011 aa25.88■■□□□ 1.73
SHMT1-209ENST00000582653 SCAF8Q9UPN6 1271 aaKnown RBP25.88■■□□□ 1.73
SHMT1-209ENST00000582653 KIAA0825Q8IV33 1275 aa25.87■■□□□ 1.73
SHMT1-209ENST00000582653 KAZALD1Q96I82 304 aa25.87■■□□□ 1.73
SHMT1-209ENST00000582653 TAF7LQ5H9L4 462 aa25.86■■□□□ 1.73
SHMT1-209ENST00000582653 REM2Q8IYK8 340 aaPredicted RBP25.86■■□□□ 1.73
SHMT1-209ENST00000582653 CSRNP1Q96S65 589 aa25.86■■□□□ 1.73
SHMT1-209ENST00000582653 SAGE1Q9NXZ1 904 aa25.86■■□□□ 1.73
SHMT1-209ENST00000582653 PLIN1O60240 522 aa25.85■■□□□ 1.73
SHMT1-209ENST00000582653 IL1R1P14778 569 aa25.85■■□□□ 1.73
SHMT1-209ENST00000582653 PRAMEF18Q5VWM3 479 aa25.85■■□□□ 1.73
SHMT1-209ENST00000582653 ZBED3Q96IU2 234 aaPredicted RBP25.85■■□□□ 1.73
SHMT1-209ENST00000582653 CNNM1Q9NRU3 951 aa25.84■■□□□ 1.73
SHMT1-209ENST00000582653 RNF186Q9NXI6 227 aa25.84■■□□□ 1.73
SHMT1-209ENST00000582653 ZNF646O15015 1829 aaPredicted RBP25.84■■□□□ 1.73
SHMT1-209ENST00000582653 CCER2I3L3R5 266 aa25.83■■□□□ 1.73
SHMT1-209ENST00000582653 ZNF804AQ7Z570 1209 aa25.83■■□□□ 1.73
SHMT1-209ENST00000582653 UTYO14607 1347 aa25.83■■□□□ 1.73
SHMT1-209ENST00000582653 PTPRCP08575 1304 aa25.83■■□□□ 1.73
SHMT1-209ENST00000582653 UBE2Q2LH0YL09 131 aa25.82■■□□□ 1.72
SHMT1-209ENST00000582653 SASH1O94885 1247 aa25.82■■□□□ 1.72
SHMT1-209ENST00000582653 MOB2Q70IA6 237 aa25.82■■□□□ 1.72
SHMT1-209ENST00000582653 RASAL3Q86YV0 1011 aa25.82■■□□□ 1.72
SHMT1-209ENST00000582653 TRMT2AQ8IZ69 625 aaKnown RBP25.82■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms