RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 PDS5AQ29RF7 1337 aaKnown RBP18.57■□□□□ 0.56
SS18-206ENST00000577572 TRIM6-TRIM34B2RNG4 842 aa18.57■□□□□ 0.56
SS18-206ENST00000577572 ADORA1P30542 326 aa18.57■□□□□ 0.56
SS18-206ENST00000577572 LRRFIP1Q32MZ4 808 aaKnown RBP18.57■□□□□ 0.56
SS18-206ENST00000577572 TSHZ3Q63HK5 1081 aa18.57■□□□□ 0.56
SS18-206ENST00000577572 GGA1Q9UJY5 639 aa18.57■□□□□ 0.56
SS18-206ENST00000577572 LRRC37AA6NMS7 1700 aa18.57■□□□□ 0.56
SS18-206ENST00000577572 PSDA5PKW4 1024 aaPredicted RBP18.56■□□□□ 0.56
SS18-206ENST00000577572 TTF1Q15361 905 aaPredicted RBP18.56■□□□□ 0.56
SS18-206ENST00000577572 SOGA3Q5TF21 947 aa18.56■□□□□ 0.56
SS18-206ENST00000577572 PRPF40BQ6NWY9 871 aaKnown RBP18.56■□□□□ 0.56
SS18-206ENST00000577572 FBXO33Q7Z6M2 555 aa18.56■□□□□ 0.56
SS18-206ENST00000577572 TTLL6Q8N841 843 aa18.56■□□□□ 0.56
SS18-206ENST00000577572 BOLA2Q9H3K6 86 aa18.56■□□□□ 0.56
SS18-206ENST00000577572 COL11A2P13942 1736 aaPredicted RBP18.55■□□□□ 0.56
SS18-206ENST00000577572 GPSM2P81274 684 aa18.55■□□□□ 0.56
SS18-206ENST00000577572 C7orf43Q8WVR3 580 aa18.55■□□□□ 0.56
SS18-206ENST00000577572 NSFL1CQ9UNZ2 370 aaKnown RBP18.55■□□□□ 0.56
SS18-206ENST00000577572 SPEF2Q9C093 1822 aa18.55■□□□□ 0.56
SS18-206ENST00000577572 IRS2Q9Y4H2 1338 aa18.54■□□□□ 0.56
SS18-206ENST00000577572 CHRNA5P30532 468 aa18.54■□□□□ 0.56
SS18-206ENST00000577572 HIBADHP31937 336 aaKnown RBP18.54■□□□□ 0.56
SS18-206ENST00000577572 TMED8Q6PL24 325 aaPredicted RBP18.54■□□□□ 0.56
SS18-206ENST00000577572 VPS37DQ86XT2 251 aa18.54■□□□□ 0.56
SS18-206ENST00000577572 MPNDQ8N594 471 aa18.54■□□□□ 0.56
SS18-206ENST00000577572 RILPL2Q969X0 211 aa18.54■□□□□ 0.56
SS18-206ENST00000577572 FAM84BQ96KN1 310 aaPredicted RBP18.54■□□□□ 0.56
SS18-206ENST00000577572 MED23Q9ULK4 1368 aa18.54■□□□□ 0.56
SS18-206ENST00000577572 A0A1B0GUL6 1792 aa18.53■□□□□ 0.56
SS18-206ENST00000577572 EPB41L2O43491 1005 aaKnown RBP18.53■□□□□ 0.56
SS18-206ENST00000577572 PHKA1P46020 1223 aa18.53■□□□□ 0.56
SS18-206ENST00000577572 KBTBD3Q8NAB2 608 aa18.53■□□□□ 0.56
SS18-206ENST00000577572 TBC1D16Q8TBP0 767 aa18.53■□□□□ 0.56
SS18-206ENST00000577572 EYA3Q99504 573 aa18.53■□□□□ 0.56
SS18-206ENST00000577572 RTFDC1Q9BY42 306 aaPredicted RBP18.53■□□□□ 0.56
SS18-206ENST00000577572 PAG1Q9NWQ8 432 aa18.53■□□□□ 0.56
SS18-206ENST00000577572 PIM2Q9P1W9 311 aa18.53■□□□□ 0.56
SS18-206ENST00000577572 DENND2AQ9ULE3 1009 aa18.53■□□□□ 0.56
SS18-206ENST00000577572 DLEC1Q9Y238 1755 aa18.53■□□□□ 0.56
SS18-206ENST00000577572 TAF1P21675 1872 aa18.52■□□□□ 0.56
SS18-206ENST00000577572 UFL1O94874 794 aa18.52■□□□□ 0.56
SS18-206ENST00000577572 DPEP1P16444 411 aa18.52■□□□□ 0.56
SS18-206ENST00000577572 KCNA3P22001 575 aa18.52■□□□□ 0.56
SS18-206ENST00000577572 DPP8Q6V1X1 898 aaPredicted RBP18.52■□□□□ 0.56
SS18-206ENST00000577572 TBC1D9Q6ZT07 1266 aa18.52■□□□□ 0.56
SS18-206ENST00000577572 ZNF804AQ7Z570 1209 aa18.52■□□□□ 0.56
SS18-206ENST00000577572 RTKN2Q8IZC4 609 aa18.52■□□□□ 0.56
SS18-206ENST00000577572 SUPT20HQ8NEM7 779 aa18.52■□□□□ 0.56
SS18-206ENST00000577572 RUFY2Q8WXA3 655 aa18.52■□□□□ 0.56
SS18-206ENST00000577572 VPS33BQ9H267 617 aa18.52■□□□□ 0.56
SS18-206ENST00000577572 ZFYP08048 801 aaPredicted RBP18.51■□□□□ 0.55
SS18-206ENST00000577572 CHMLP26374 656 aa18.51■□□□□ 0.55
SS18-206ENST00000577572 BCAMP50895 628 aa18.51■□□□□ 0.55
SS18-206ENST00000577572 SPATA5Q8NB90 893 aa18.51■□□□□ 0.55
SS18-206ENST00000577572 UPF2Q9HAU5 1272 aaKnown RBP18.51■□□□□ 0.55
SS18-206ENST00000577572 MCAMP43121 646 aa18.5■□□□□ 0.55
SS18-206ENST00000577572 ZSCAN25Q6NSZ9 544 aa18.5■□□□□ 0.55
SS18-206ENST00000577572 DNAJC2Q99543 621 aaKnown RBP18.5■□□□□ 0.55
SS18-206ENST00000577572 FSD1Q9BTV5 496 aa18.5■□□□□ 0.55
SS18-206ENST00000577572 HMG20BQ9P0W2 317 aa18.5■□□□□ 0.55
SS18-206ENST00000577572 LTBP1Q14766 1721 aa18.49■□□□□ 0.55
SS18-206ENST00000577572 A0A0G2JLW4 131 aa18.49■□□□□ 0.55
SS18-206ENST00000577572 SNAP23O00161 211 aa18.49■□□□□ 0.55
SS18-206ENST00000577572 FKBP4Q02790 459 aaKnown RBP eCLIP18.49■□□□□ 0.55
SS18-206ENST00000577572 RASGRF1Q13972 1273 aa18.49■□□□□ 0.55
SS18-206ENST00000577572 CCDC93Q567U6 631 aa18.49■□□□□ 0.55
SS18-206ENST00000577572 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.49■□□□□ 0.55
SS18-206ENST00000577572 COA1Q9GZY4 146 aa18.49■□□□□ 0.55
SS18-206ENST00000577572 DIAPH3Q9NSV4 1193 aa18.49■□□□□ 0.55
SS18-206ENST00000577572 POLLQ9UGP5 575 aa18.49■□□□□ 0.55
SS18-206ENST00000577572 RAD50Q92878 1312 aa18.49■□□□□ 0.55
SS18-206ENST00000577572 C6orf229H3BNL8 230 aa18.48■□□□□ 0.55
SS18-206ENST00000577572 GOLIM4O00461 696 aa18.48■□□□□ 0.55
SS18-206ENST00000577572 REC8O95072 547 aa18.48■□□□□ 0.55
SS18-206ENST00000577572 IL1R1P14778 569 aa18.48■□□□□ 0.55
SS18-206ENST00000577572 GYG1P46976 350 aa18.48■□□□□ 0.55
SS18-206ENST00000577572 SCARF1Q14162 830 aa18.48■□□□□ 0.55
SS18-206ENST00000577572 DALRD3Q5D0E6 543 aaKnown RBP18.48■□□□□ 0.55
SS18-206ENST00000577572 ZGPATQ8N5A5 531 aaKnown RBP18.48■□□□□ 0.55
SS18-206ENST00000577572 TDRD7Q8NHU6 1098 aaKnown RBP18.48■□□□□ 0.55
SS18-206ENST00000577572 PSMD1Q99460 953 aa18.48■□□□□ 0.55
SS18-206ENST00000577572 ZC3H12CQ9C0D7 883 aaKnown RBP18.48■□□□□ 0.55
SS18-206ENST00000577572 SNRKQ9NRH2 765 aa18.48■□□□□ 0.55
SS18-206ENST00000577572 SNED1Q8TER0 1413 aa18.48■□□□□ 0.55
SS18-206ENST00000577572 ZAP70P43403 619 aa18.47■□□□□ 0.55
SS18-206ENST00000577572 SALL1Q9NSC2 1324 aa18.47■□□□□ 0.55
SS18-206ENST00000577572 MAP4K4O95819 1239 aaPredicted RBP18.46■□□□□ 0.55
SS18-206ENST00000577572 CYP2E1P05181 493 aaPredicted RBP18.46■□□□□ 0.55
SS18-206ENST00000577572 WASHC4Q2M389 1173 aa18.46■□□□□ 0.55
SS18-206ENST00000577572 WDR66Q8TBY9 1149 aa18.46■□□□□ 0.55
SS18-206ENST00000577572 ESYT1Q9BSJ8 1104 aa18.46■□□□□ 0.55
SS18-206ENST00000577572 FRAT2O75474 233 aaPredicted RBP18.45■□□□□ 0.54
SS18-206ENST00000577572 KLRK1P26718 216 aa18.45■□□□□ 0.54
SS18-206ENST00000577572 MAP3K12Q12852 859 aa18.45■□□□□ 0.54
SS18-206ENST00000577572 CD209Q9NNX6 404 aa18.45■□□□□ 0.54
SS18-206ENST00000577572 HELLSQ9NRZ9 838 aa18.45■□□□□ 0.54
SS18-206ENST00000577572 KIAA1551Q9HCM1 1747 aa18.45■□□□□ 0.54
SS18-206ENST00000577572 SLX4Q8IY92 1834 aa18.44■□□□□ 0.54
SS18-206ENST00000577572 DUOX1Q9NRD9 1551 aa18.44■□□□□ 0.54
SS18-206ENST00000577572 WTIPA6NIX2 430 aaPredicted RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms