RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 PHLDB3Q6NSJ2 640 aa9.74□□□□□ -0.85
SMCHD1-202ENST00000577300 POP1Q99575 1024 aaKnown RBP9.74□□□□□ -0.85
SMCHD1-202ENST00000577300 FSCN2O14926 492 aa9.73□□□□□ -0.85
SMCHD1-202ENST00000577300 EPHA1P21709 976 aa9.73□□□□□ -0.85
SMCHD1-202ENST00000577300 MTMR3Q13615 1198 aa9.73□□□□□ -0.85
SMCHD1-202ENST00000577300 FAM117BQ6P1L5 589 aa9.73□□□□□ -0.85
SMCHD1-202ENST00000577300 TXNDC11Q6PKC3 985 aa9.73□□□□□ -0.85
SMCHD1-202ENST00000577300 KLHL23Q8NBE8 558 aa9.73□□□□□ -0.85
SMCHD1-202ENST00000577300 CHRDQ9H2X0 955 aa9.73□□□□□ -0.85
SMCHD1-202ENST00000577300 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.73□□□□□ -0.85
SMCHD1-202ENST00000577300 A6NHS1 94 aa9.72□□□□□ -0.85
SMCHD1-202ENST00000577300 FAM177BA6PVY3 158 aa9.72□□□□□ -0.85
SMCHD1-202ENST00000577300 NFKBIEO00221 500 aa9.72□□□□□ -0.85
SMCHD1-202ENST00000577300 FAM13AO94988 1023 aa9.72□□□□□ -0.85
SMCHD1-202ENST00000577300 SF3B2Q13435 895 aaKnown RBP9.72□□□□□ -0.85
SMCHD1-202ENST00000577300 C14orf37Q86TY3 774 aa9.72□□□□□ -0.85
SMCHD1-202ENST00000577300 AGGF1Q8N302 714 aaeCLIP9.72□□□□□ -0.85
SMCHD1-202ENST00000577300 SH2B1Q9NRF2 756 aaPredicted RBP9.72□□□□□ -0.85
SMCHD1-202ENST00000577300 DZANK1Q9NVP4 752 aa9.72□□□□□ -0.85
SMCHD1-202ENST00000577300 POLIQ9UNA4 740 aa9.72□□□□□ -0.85
SMCHD1-202ENST00000577300 SLC51AQ86UW1 340 aa9.71□□□□□ -0.86
SMCHD1-202ENST00000577300 WNT8BQ93098 351 aa9.71□□□□□ -0.86
SMCHD1-202ENST00000577300 ZFP64Q9NPA5 681 aa9.71□□□□□ -0.86
SMCHD1-202ENST00000577300 WISP1O95388 367 aa9.7□□□□□ -0.86
SMCHD1-202ENST00000577300 GLB1P16278 677 aa9.7□□□□□ -0.86
SMCHD1-202ENST00000577300 USP5P45974 858 aa9.7□□□□□ -0.86
SMCHD1-202ENST00000577300 FKBP4Q02790 459 aaKnown RBP eCLIP9.7□□□□□ -0.86
SMCHD1-202ENST00000577300 EHHADHQ08426 723 aa9.7□□□□□ -0.86
SMCHD1-202ENST00000577300 LRP8Q14114 963 aa9.7□□□□□ -0.86
SMCHD1-202ENST00000577300 KCNK4Q9NYG8 393 aa9.7□□□□□ -0.86
SMCHD1-202ENST00000577300 H3BRJ5 948 aa9.69□□□□□ -0.86
SMCHD1-202ENST00000577300 ACPPP15309 386 aa9.69□□□□□ -0.86
SMCHD1-202ENST00000577300 CDC25BP30305 580 aa9.69□□□□□ -0.86
SMCHD1-202ENST00000577300 CABP4P57796 275 aa9.69□□□□□ -0.86
SMCHD1-202ENST00000577300 CARD10Q9BWT7 1032 aa9.69□□□□□ -0.86
SMCHD1-202ENST00000577300 SEC31BQ9NQW1 1179 aa9.69□□□□□ -0.86
SMCHD1-202ENST00000577300 USTQ9Y2C2 406 aa9.69□□□□□ -0.86
SMCHD1-202ENST00000577300 CARNS1A5YM72 827 aa9.68□□□□□ -0.86
SMCHD1-202ENST00000577300 PDE2AO00408 941 aaPredicted RBP9.68□□□□□ -0.86
SMCHD1-202ENST00000577300 FZD6O60353 706 aa9.68□□□□□ -0.86
SMCHD1-202ENST00000577300 TNFRSF21O75509 655 aa9.68□□□□□ -0.86
SMCHD1-202ENST00000577300 PIP4K2BP78356 416 aa9.68□□□□□ -0.86
SMCHD1-202ENST00000577300 AAMPQ13685 434 aa9.68□□□□□ -0.86
SMCHD1-202ENST00000577300 ACAD11Q709F0 780 aa9.68□□□□□ -0.86
SMCHD1-202ENST00000577300 SNX29Q8TEQ0 813 aa9.68□□□□□ -0.86
SMCHD1-202ENST00000577300 CEP41Q9BYV8 373 aa9.68□□□□□ -0.86
SMCHD1-202ENST00000577300 OSGEPQ9NPF4 335 aa9.68□□□□□ -0.86
SMCHD1-202ENST00000577300 RNF112Q9ULX5 631 aa9.68□□□□□ -0.86
SMCHD1-202ENST00000577300 KIAA1211Q6ZU35 1233 aa9.67□□□□□ -0.86
SMCHD1-202ENST00000577300 TMEM102Q8N9M5 508 aaPredicted RBP9.67□□□□□ -0.86
SMCHD1-202ENST00000577300 KLHDC7BQ96G42 594 aa9.67□□□□□ -0.86
SMCHD1-202ENST00000577300 UBL7Q96S82 380 aaPredicted RBP9.67□□□□□ -0.86
SMCHD1-202ENST00000577300 ADAM11O75078 769 aa9.66□□□□□ -0.86
SMCHD1-202ENST00000577300 PHACTR2O75167 634 aa9.66□□□□□ -0.86
SMCHD1-202ENST00000577300 FSTP19883 344 aa9.66□□□□□ -0.86
SMCHD1-202ENST00000577300 DUOXA2Q1HG44 320 aa9.66□□□□□ -0.86
SMCHD1-202ENST00000577300 FOXD4L4Q8WXT5 416 aaPredicted RBP9.66□□□□□ -0.86
SMCHD1-202ENST00000577300 SOX13Q9UN79 622 aa9.66□□□□□ -0.86
SMCHD1-202ENST00000577300 EREGO14944 169 aa9.65□□□□□ -0.86
SMCHD1-202ENST00000577300 TRPA1O75762 1119 aa9.65□□□□□ -0.86
SMCHD1-202ENST00000577300 UVSSAQ2YD98 709 aa9.65□□□□□ -0.86
SMCHD1-202ENST00000577300 GJD3Q8N144 294 aa9.65□□□□□ -0.86
SMCHD1-202ENST00000577300 HHIPQ96QV1 700 aa9.65□□□□□ -0.86
SMCHD1-202ENST00000577300 OSMRQ99650 979 aa9.65□□□□□ -0.86
SMCHD1-202ENST00000577300 RAXQ9Y2V3 346 aa9.65□□□□□ -0.86
SMCHD1-202ENST00000577300 DDX3YO15523 660 aaKnown RBP9.64□□□□□ -0.87
SMCHD1-202ENST00000577300 HYAL3O43820 417 aaPredicted RBP9.64□□□□□ -0.87
SMCHD1-202ENST00000577300 ABL1P00519 1130 aa9.64□□□□□ -0.87
SMCHD1-202ENST00000577300 EDN3P14138 238 aa9.64□□□□□ -0.87
SMCHD1-202ENST00000577300 B4GALNT3Q6L9W6 998 aa9.64□□□□□ -0.87
SMCHD1-202ENST00000577300 NXPE3Q969Y0 559 aa9.64□□□□□ -0.87
SMCHD1-202ENST00000577300 ZKSCAN3Q9BRR0 538 aa9.64□□□□□ -0.87
SMCHD1-202ENST00000577300 EGFL7Q9UHF1 273 aa9.64□□□□□ -0.87
SMCHD1-202ENST00000577300 ZNF211Q13398 564 aaPredicted RBP9.63□□□□□ -0.87
SMCHD1-202ENST00000577300 ARMC10Q8N2F6 343 aa9.63□□□□□ -0.87
SMCHD1-202ENST00000577300 UBASH3BQ8TF42 649 aa9.63□□□□□ -0.87
SMCHD1-202ENST00000577300 FAM46AQ96IP4 442 aaKnown RBP9.63□□□□□ -0.87
SMCHD1-202ENST00000577300 CCDC87Q9NVE4 849 aa9.63□□□□□ -0.87
SMCHD1-202ENST00000577300 FOXD3Q9UJU5 478 aaPredicted RBP9.63□□□□□ -0.87
SMCHD1-202ENST00000577300 GSC2O15499 205 aa9.62□□□□□ -0.87
SMCHD1-202ENST00000577300 DHX15O43143 795 aaKnown RBP9.62□□□□□ -0.87
SMCHD1-202ENST00000577300 BSNDQ8WZ55 320 aa9.62□□□□□ -0.87
SMCHD1-202ENST00000577300 ANO2Q9NQ90 1003 aa9.62□□□□□ -0.87
SMCHD1-202ENST00000577300 AMOTL2Q9Y2J4 779 aa9.62□□□□□ -0.87
SMCHD1-202ENST00000577300 ARL4DP49703 201 aa9.61□□□□□ -0.87
SMCHD1-202ENST00000577300 NBPF11Q86T75 865 aa9.61□□□□□ -0.87
SMCHD1-202ENST00000577300 BHLHE41Q9C0J9 482 aaPredicted RBP9.61□□□□□ -0.87
SMCHD1-202ENST00000577300 STOML1Q9UBI4 398 aa9.61□□□□□ -0.87
SMCHD1-202ENST00000577300 ICMTO60725 284 aa9.6□□□□□ -0.87
SMCHD1-202ENST00000577300 C19orf57Q0VDD7 668 aa9.6□□□□□ -0.87
SMCHD1-202ENST00000577300 RNF208Q9H0X6 261 aa9.6□□□□□ -0.87
SMCHD1-202ENST00000577300 ZFYVE28Q9HCC9 887 aa9.6□□□□□ -0.87
SMCHD1-202ENST00000577300 PEAR1Q5VY43 1037 aaPredicted RBP9.59□□□□□ -0.87
SMCHD1-202ENST00000577300 ANKRD34AQ69YU3 496 aa9.59□□□□□ -0.87
SMCHD1-202ENST00000577300 VN1R5Q7Z5H4 357 aa9.59□□□□□ -0.87
SMCHD1-202ENST00000577300 SLC7A3Q8WY07 619 aa9.59□□□□□ -0.87
SMCHD1-202ENST00000577300 UTP4Q969X6 686 aaKnown RBP9.59□□□□□ -0.87
SMCHD1-202ENST00000577300 MYRFLQ96LU7 910 aa9.59□□□□□ -0.87
SMCHD1-202ENST00000577300 SOX1O00570 391 aaPredicted RBP9.58□□□□□ -0.88
SMCHD1-202ENST00000577300 IGLV1-40P01703 118 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms