RNA–Protein interactions for RNA: ENST00000576601.1

CIITA-211, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 4

Gene CIITA, Length 626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-211ENST00000576601 PLBD2Q8NHP8 589 aa17.95■□□□□ 0.46
CIITA-211ENST00000576601 CHPF2Q9P2E5 772 aa17.95■□□□□ 0.46
CIITA-211ENST00000576601 USP17L3A6NCW0 530 aa17.94■□□□□ 0.46
CIITA-211ENST00000576601 USP17L4A6NCW7 530 aa17.94■□□□□ 0.46
CIITA-211ENST00000576601 WTIPA6NIX2 430 aaPredicted RBP17.94■□□□□ 0.46
CIITA-211ENST00000576601 IRS4O14654 1257 aaPredicted RBP17.94■□□□□ 0.46
CIITA-211ENST00000576601 USP17L1Q7RTZ2 530 aa17.94■□□□□ 0.46
CIITA-211ENST00000576601 IFNL1Q8IU54 200 aa17.94■□□□□ 0.46
CIITA-211ENST00000576601 MXD3Q9BW11 206 aa17.94■□□□□ 0.46
CIITA-211ENST00000576601 ANKIB1Q9P2G1 1089 aa17.94■□□□□ 0.46
CIITA-211ENST00000576601 FZD1Q9UP38 647 aa17.94■□□□□ 0.46
CIITA-211ENST00000576601 TRIM35Q9UPQ4 493 aa17.94■□□□□ 0.46
CIITA-211ENST00000576601 PTPN22Q9Y2R2 807 aa17.94■□□□□ 0.46
CIITA-211ENST00000576601 DACT2Q5SW24 774 aa17.93■□□□□ 0.46
CIITA-211ENST00000576601 BABAM1Q9NWV8 329 aa17.93■□□□□ 0.46
CIITA-211ENST00000576601 G3V3G9 751 aa17.92■□□□□ 0.46
CIITA-211ENST00000576601 SASH1O94885 1247 aa17.92■□□□□ 0.46
CIITA-211ENST00000576601 ALDH1A1P00352 501 aa17.92■□□□□ 0.46
CIITA-211ENST00000576601 LMOD3Q0VAK6 560 aa17.92■□□□□ 0.46
CIITA-211ENST00000576601 PRKG1Q13976 671 aa17.92■□□□□ 0.46
CIITA-211ENST00000576601 DCAF8Q5TAQ9 597 aa17.92■□□□□ 0.46
CIITA-211ENST00000576601 CD99L2Q8TCZ2 262 aa17.92■□□□□ 0.46
CIITA-211ENST00000576601 COL1A1P02452 1464 aaPredicted RBP17.92■□□□□ 0.46
CIITA-211ENST00000576601 EYSQ5T1H1 3165 aa17.92■□□□□ 0.46
CIITA-211ENST00000576601 XDHP47989 1333 aa17.92■□□□□ 0.46
CIITA-211ENST00000576601 NF2P35240 595 aa17.91■□□□□ 0.46
CIITA-211ENST00000576601 TRIM28Q13263 835 aaKnown RBP17.91■□□□□ 0.46
CIITA-211ENST00000576601 ANKRD13DQ6ZTN6 518 aa17.91■□□□□ 0.46
CIITA-211ENST00000576601 PODNQ7Z5L7 613 aa17.91■□□□□ 0.46
CIITA-211ENST00000576601 OTUD5Q96G74 571 aa17.91■□□□□ 0.46
CIITA-211ENST00000576601 MED23Q9ULK4 1368 aa17.91■□□□□ 0.46
CIITA-211ENST00000576601 MANSC4A6NHS7 340 aaPredicted RBP17.9■□□□□ 0.46
CIITA-211ENST00000576601 RUNDC1Q96C34 613 aa17.9■□□□□ 0.46
CIITA-211ENST00000576601 ZNF333Q96JL9 665 aa17.9■□□□□ 0.46
CIITA-211ENST00000576601 ADAMTS8Q9UP79 889 aa17.9■□□□□ 0.46
CIITA-211ENST00000576601 LAS1LQ9Y4W2 734 aaKnown RBP17.9■□□□□ 0.46
CIITA-211ENST00000576601 CHL1O00533 1208 aa17.89■□□□□ 0.45
CIITA-211ENST00000576601 CRHR2Q13324 411 aa17.89■□□□□ 0.45
CIITA-211ENST00000576601 ARMC9Q7Z3E5 817 aa17.89■□□□□ 0.45
CIITA-211ENST00000576601 ZBED3Q96IU2 234 aaPredicted RBP17.89■□□□□ 0.45
CIITA-211ENST00000576601 CLMNQ96JQ2 1002 aa17.89■□□□□ 0.45
CIITA-211ENST00000576601 ANGEL1Q9UNK9 670 aaKnown RBP17.89■□□□□ 0.45
CIITA-211ENST00000576601 ZBTB48P10074 688 aaPredicted RBP17.88■□□□□ 0.45
CIITA-211ENST00000576601 WDR43Q15061 677 aaKnown RBP eCLIP17.88■□□□□ 0.45
CIITA-211ENST00000576601 ERO1AQ96HE7 468 aa17.88■□□□□ 0.45
CIITA-211ENST00000576601 WNK4Q96J92 1243 aa17.88■□□□□ 0.45
CIITA-211ENST00000576601 H0YGN5 161 aa17.87■□□□□ 0.45
CIITA-211ENST00000576601 GJA5P36382 358 aa17.87■□□□□ 0.45
CIITA-211ENST00000576601 MAP3K11Q16584 847 aa17.87■□□□□ 0.45
CIITA-211ENST00000576601 APOBEC3FQ8IUX4 373 aaKnown RBP17.87■□□□□ 0.45
CIITA-211ENST00000576601 ZBTB38Q8NAP3 1195 aaPredicted RBP17.87■□□□□ 0.45
CIITA-211ENST00000576601 INHBEP58166 350 aa17.86■□□□□ 0.45
CIITA-211ENST00000576601 HDGFL1Q5TGJ6 251 aa17.86■□□□□ 0.45
CIITA-211ENST00000576601 CCDC85AQ96PX6 553 aaPredicted RBP17.86■□□□□ 0.45
CIITA-211ENST00000576601 PRKRIP1Q9H875 184 aaPredicted RBP17.86■□□□□ 0.45
CIITA-211ENST00000576601 EFCC1Q9HA90 598 aa17.86■□□□□ 0.45
CIITA-211ENST00000576601 MYO3BQ8WXR4 1341 aa17.86■□□□□ 0.45
CIITA-211ENST00000576601 ARAP2Q8WZ64 1704 aa17.86■□□□□ 0.45
CIITA-211ENST00000576601 ATP2B4P23634 1241 aa17.85■□□□□ 0.45
CIITA-211ENST00000576601 CCDC152Q4G0S7 254 aa17.85■□□□□ 0.45
CIITA-211ENST00000576601 STRIP1Q5VSL9 837 aa17.85■□□□□ 0.45
CIITA-211ENST00000576601 OGFOD1Q8N543 542 aa17.85■□□□□ 0.45
CIITA-211ENST00000576601 PTPN18Q99952 460 aa17.85■□□□□ 0.45
CIITA-211ENST00000576601 SPTBN5Q9NRC6 3674 aaKnown RBP17.85■□□□□ 0.45
CIITA-211ENST00000576601 PRUNE2Q8WUY3 3088 aa17.84■□□□□ 0.45
CIITA-211ENST00000576601 TXNRD3Q86VQ6 643 aa17.84■□□□□ 0.45
CIITA-211ENST00000576601 DBF4Q9UBU7 674 aaPredicted RBP17.84■□□□□ 0.45
CIITA-211ENST00000576601 SLC10A4Q96EP9 437 aa17.83■□□□□ 0.44
CIITA-211ENST00000576601 MBIPQ9NS73 344 aa17.83■□□□□ 0.44
CIITA-211ENST00000576601 DLL1O00548 723 aa17.82■□□□□ 0.44
CIITA-211ENST00000576601 PDE8AO60658 829 aa17.82■□□□□ 0.44
CIITA-211ENST00000576601 PCCAP05165 728 aaPredicted RBP17.82■□□□□ 0.44
CIITA-211ENST00000576601 HOXB7P09629 217 aa17.82■□□□□ 0.44
CIITA-211ENST00000576601 KLRK1P26718 216 aa17.82■□□□□ 0.44
CIITA-211ENST00000576601 SP3Q02447 781 aa17.82■□□□□ 0.44
CIITA-211ENST00000576601 ANKRD18AQ8IVF6 992 aa17.82■□□□□ 0.44
CIITA-211ENST00000576601 JARID2Q92833 1246 aaPredicted RBP17.82■□□□□ 0.44
CIITA-211ENST00000576601 DEFB129Q9H1M3 183 aa17.82■□□□□ 0.44
CIITA-211ENST00000576601 PTCH2Q9Y6C5 1203 aa17.82■□□□□ 0.44
CIITA-211ENST00000576601 ALPK3Q96L96 1907 aa17.82■□□□□ 0.44
CIITA-211ENST00000576601 TESPA1A2RU30 521 aaPredicted RBP17.81■□□□□ 0.44
CIITA-211ENST00000576601 DUSP27Q5VZP5 1158 aa17.81■□□□□ 0.44
CIITA-211ENST00000576601 CHRDL2Q6WN34 429 aa17.81■□□□□ 0.44
CIITA-211ENST00000576601 KIAA0825Q8IV33 1275 aa17.81■□□□□ 0.44
CIITA-211ENST00000576601 HYPKQ9NX55 129 aa17.81■□□□□ 0.44
CIITA-211ENST00000576601 RBM27Q9P2N5 1060 aaKnown RBP17.81■□□□□ 0.44
CIITA-211ENST00000576601 MINPP1Q9UNW1 487 aa17.81■□□□□ 0.44
CIITA-211ENST00000576601 PCDHAC2Q9Y5I4 1007 aa17.81■□□□□ 0.44
CIITA-211ENST00000576601 AOX1Q06278 1338 aa17.8■□□□□ 0.44
CIITA-211ENST00000576601 APAF1O14727 1248 aa17.8■□□□□ 0.44
CIITA-211ENST00000576601 FBXW7Q969H0 707 aa17.8■□□□□ 0.44
CIITA-211ENST00000576601 TMEM106CQ9BVX2 250 aa17.8■□□□□ 0.44
CIITA-211ENST00000576601 PRO3102Q9H379 93 aa17.8■□□□□ 0.44
CIITA-211ENST00000576601 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.8■□□□□ 0.44
CIITA-211ENST00000576601 ZNF853P0CG23 659 aa17.79■□□□□ 0.44
CIITA-211ENST00000576601 MMP14P50281 582 aa17.79■□□□□ 0.44
CIITA-211ENST00000576601 CCT4P50991 539 aaKnown RBP17.79■□□□□ 0.44
CIITA-211ENST00000576601 SLC9C1Q4G0N8 1177 aa17.79■□□□□ 0.44
CIITA-211ENST00000576601 SHISA4Q96DD7 197 aa17.79■□□□□ 0.44
CIITA-211ENST00000576601 COA1Q9GZY4 146 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms