RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 AOC3Q16853 763 aa10.59□□□□□ -0.71
NUP88-211ENST00000575976 WASHC4Q2M389 1173 aa10.59□□□□□ -0.71
NUP88-211ENST00000575976 HSP90AB4PQ58FF6 505 aa10.59□□□□□ -0.71
NUP88-211ENST00000575976 TXNRD3Q86VQ6 643 aa10.59□□□□□ -0.71
NUP88-211ENST00000575976 EYA3Q99504 573 aa10.59□□□□□ -0.71
NUP88-211ENST00000575976 FER1L6Q2WGJ9 1857 aa10.59□□□□□ -0.71
NUP88-211ENST00000575976 LTBP1Q14766 1721 aa10.58□□□□□ -0.72
NUP88-211ENST00000575976 PPIP5K2O43314 1243 aa10.58□□□□□ -0.72
NUP88-211ENST00000575976 RAB11FIP3O75154 756 aa10.58□□□□□ -0.72
NUP88-211ENST00000575976 LMNB1P20700 586 aa10.58□□□□□ -0.72
NUP88-211ENST00000575976 TIMM10P62072 90 aa10.58□□□□□ -0.72
NUP88-211ENST00000575976 KIAA2012Q0VF49 1180 aa10.58□□□□□ -0.72
NUP88-211ENST00000575976 PUM3Q15397 648 aaKnown RBP10.58□□□□□ -0.72
NUP88-211ENST00000575976 ERC1Q8IUD2 1116 aa10.58□□□□□ -0.72
NUP88-211ENST00000575976 LARGE2Q8N3Y3 721 aa10.58□□□□□ -0.72
NUP88-211ENST00000575976 RBM46Q8TBY0 533 aaKnown RBP10.58□□□□□ -0.72
NUP88-211ENST00000575976 RHPN1Q8TCX5 695 aa10.58□□□□□ -0.72
NUP88-211ENST00000575976 KIF1BPQ96EK5 621 aa10.58□□□□□ -0.72
NUP88-211ENST00000575976 ZC3H12CQ9C0D7 883 aaKnown RBP10.58□□□□□ -0.72
NUP88-211ENST00000575976 VPS33BQ9H267 617 aa10.58□□□□□ -0.72
NUP88-211ENST00000575976 RWDD1Q9H446 243 aaPredicted RBP10.58□□□□□ -0.72
NUP88-211ENST00000575976 IRS2Q9Y4H2 1338 aa10.58□□□□□ -0.72
NUP88-211ENST00000575976 MED23Q9ULK4 1368 aa10.57□□□□□ -0.72
NUP88-211ENST00000575976 A0A1B0GUL7 405 aa10.57□□□□□ -0.72
NUP88-211ENST00000575976 IFIT1P09914 478 aaKnown RBP10.57□□□□□ -0.72
NUP88-211ENST00000575976 ATP2B3Q16720 1220 aa10.57□□□□□ -0.72
NUP88-211ENST00000575976 DOK7Q18PE1 504 aa10.57□□□□□ -0.72
NUP88-211ENST00000575976 C9orf131Q5VYM1 1079 aa10.57□□□□□ -0.72
NUP88-211ENST00000575976 C15orf52Q6ZUT6 534 aaKnown RBP10.57□□□□□ -0.72
NUP88-211ENST00000575976 LPIN2Q92539 896 aa10.57□□□□□ -0.72
NUP88-211ENST00000575976 IL1RAPL2Q9NP60 686 aa10.57□□□□□ -0.72
NUP88-211ENST00000575976 GPR108Q9NPR9 543 aa10.57□□□□□ -0.72
NUP88-211ENST00000575976 RNF181Q9P0P0 153 aa10.57□□□□□ -0.72
NUP88-211ENST00000575976 AKAP2Q9Y2D5 859 aa10.57□□□□□ -0.72
NUP88-211ENST00000575976 A0A1B0GUL6 1792 aa10.57□□□□□ -0.72
NUP88-211ENST00000575976 SMARCA5O60264 1052 aaPredicted RBP10.56□□□□□ -0.72
NUP88-211ENST00000575976 SLC5A1P13866 664 aa10.56□□□□□ -0.72
NUP88-211ENST00000575976 ADORA1P30542 326 aa10.56□□□□□ -0.72
NUP88-211ENST00000575976 GYG1P46976 350 aa10.56□□□□□ -0.72
NUP88-211ENST00000575976 FSTL1Q12841 308 aa10.56□□□□□ -0.72
NUP88-211ENST00000575976 TNNI3KQ59H18 835 aa10.56□□□□□ -0.72
NUP88-211ENST00000575976 EAF2Q96CJ1 260 aaPredicted RBP10.56□□□□□ -0.72
NUP88-211ENST00000575976 GCC1Q96CN9 775 aa10.56□□□□□ -0.72
NUP88-211ENST00000575976 NEUROD6Q96NK8 337 aa10.56□□□□□ -0.72
NUP88-211ENST00000575976 BCL11AQ9H165 835 aa10.56□□□□□ -0.72
NUP88-211ENST00000575976 DBNDD1Q9H9R9 158 aa10.56□□□□□ -0.72
NUP88-211ENST00000575976 FPGT-TNNI3KV9GXZ4 949 aa10.56□□□□□ -0.72
NUP88-211ENST00000575976 COL4A5P29400 1685 aa10.55□□□□□ -0.72
NUP88-211ENST00000575976 G3V3G9 751 aa10.55□□□□□ -0.72
NUP88-211ENST00000575976 HIBADHP31937 336 aaKnown RBP10.55□□□□□ -0.72
NUP88-211ENST00000575976 BCAMP50895 628 aa10.55□□□□□ -0.72
NUP88-211ENST00000575976 DCAF8Q5TAQ9 597 aa10.55□□□□□ -0.72
NUP88-211ENST00000575976 ERICH6BQ5W0A0 696 aa10.55□□□□□ -0.72
NUP88-211ENST00000575976 FBXO33Q7Z6M2 555 aa10.55□□□□□ -0.72
NUP88-211ENST00000575976 SMC5Q8IY18 1101 aa10.55□□□□□ -0.72
NUP88-211ENST00000575976 NIM1KQ8IY84 436 aa10.55□□□□□ -0.72
NUP88-211ENST00000575976 XAGE2Q96GT9 111 aa10.55□□□□□ -0.72
NUP88-211ENST00000575976 FAM84BQ96KN1 310 aaPredicted RBP10.55□□□□□ -0.72
NUP88-211ENST00000575976 LRRCC1Q9C099 1032 aa10.55□□□□□ -0.72
NUP88-211ENST00000575976 CCDC8Q9H0W5 538 aaPredicted RBP10.55□□□□□ -0.72
NUP88-211ENST00000575976 YDJCA8MPS7 323 aa10.54□□□□□ -0.72
NUP88-211ENST00000575976 ZNF609O15014 1411 aa10.54□□□□□ -0.72
NUP88-211ENST00000575976 ECE2O60344 883 aa10.54□□□□□ -0.72
NUP88-211ENST00000575976 HTRA3P83110 453 aa10.54□□□□□ -0.72
NUP88-211ENST00000575976 CAVIN4Q5BKX8 364 aa10.54□□□□□ -0.72
NUP88-211ENST00000575976 ANKRD45Q5TZF3 282 aa10.54□□□□□ -0.72
NUP88-211ENST00000575976 B4GALNT3Q6L9W6 998 aa10.54□□□□□ -0.72
NUP88-211ENST00000575976 AACSQ86V21 672 aa10.54□□□□□ -0.72
NUP88-211ENST00000575976 CLASRPQ8N2M8 674 aaKnown RBP10.54□□□□□ -0.72
NUP88-211ENST00000575976 JDP2Q8WYK2 163 aa10.54□□□□□ -0.72
NUP88-211ENST00000575976 DBNDD2Q9BQY9 259 aa10.54□□□□□ -0.72
NUP88-211ENST00000575976 COA1Q9GZY4 146 aa10.54□□□□□ -0.72
NUP88-211ENST00000575976 CD209Q9NNX6 404 aa10.54□□□□□ -0.72
NUP88-211ENST00000575976 TLR7Q9NYK1 1049 aaKnown RBP10.54□□□□□ -0.72
NUP88-211ENST00000575976 ZNRF3Q9ULT6 936 aa10.54□□□□□ -0.72
NUP88-211ENST00000575976 PCNTO95613 3336 aa10.54□□□□□ -0.72
NUP88-211ENST00000575976 SBF1O95248 1867 aa10.53□□□□□ -0.72
NUP88-211ENST00000575976 FZD9O00144 591 aa10.53□□□□□ -0.72
NUP88-211ENST00000575976 PHKA1P46020 1223 aa10.53□□□□□ -0.72
NUP88-211ENST00000575976 ZNF804AQ7Z570 1209 aa10.53□□□□□ -0.72
NUP88-211ENST00000575976 PODNQ7Z5L7 613 aa10.53□□□□□ -0.72
NUP88-211ENST00000575976 KCNQ5Q9NR82 932 aa10.53□□□□□ -0.72
NUP88-211ENST00000575976 DBNLQ9UJU6 430 aaKnown RBP10.53□□□□□ -0.72
NUP88-211ENST00000575976 RAD17O75943 681 aa10.52□□□□□ -0.73
NUP88-211ENST00000575976 IL1R1P14778 569 aa10.52□□□□□ -0.73
NUP88-211ENST00000575976 GORABQ5T7V8 394 aa10.52□□□□□ -0.73
NUP88-211ENST00000575976 CCDC102BQ68D86 513 aa10.52□□□□□ -0.73
NUP88-211ENST00000575976 VPS37DQ86XT2 251 aa10.52□□□□□ -0.73
NUP88-211ENST00000575976 TDRD7Q8NHU6 1098 aaKnown RBP10.52□□□□□ -0.73
NUP88-211ENST00000575976 CCDC136Q96JN2 1154 aa10.52□□□□□ -0.73
NUP88-211ENST00000575976 PPP4R2Q9NY27 417 aa10.52□□□□□ -0.73
NUP88-211ENST00000575976 IQSEC3Q9UPP2 1182 aaPredicted RBP10.52□□□□□ -0.73
NUP88-211ENST00000575976 CCDC88AQ3V6T2 1871 aa10.52□□□□□ -0.73
NUP88-211ENST00000575976 KDM2BQ8NHM5 1336 aa10.52□□□□□ -0.73
NUP88-211ENST00000575976 IFIT2P09913 472 aaKnown RBP10.51□□□□□ -0.73
NUP88-211ENST00000575976 EIF6P56537 245 aaKnown RBP10.51□□□□□ -0.73
NUP88-211ENST00000575976 GTF2IP78347 998 aa10.51□□□□□ -0.73
NUP88-211ENST00000575976 CXCL9Q07325 125 aa10.51□□□□□ -0.73
NUP88-211ENST00000575976 CCDC158Q5M9N0 1113 aa10.51□□□□□ -0.73
NUP88-211ENST00000575976 CIAPIN1Q6FI81 312 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms