RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 GPSM2P81274 684 aa16.6■□□□□ 0.25
CCDC40-209ENST00000573474 CAVIN4Q5BKX8 364 aa16.6■□□□□ 0.25
CCDC40-209ENST00000573474 CNKSR1Q969H4 720 aa16.6■□□□□ 0.25
CCDC40-209ENST00000573474 FSD1Q9BTV5 496 aa16.6■□□□□ 0.25
CCDC40-209ENST00000573474 GNL3LQ9NVN8 582 aaKnown RBP16.6■□□□□ 0.25
CCDC40-209ENST00000573474 PODXL2Q9NZ53 605 aa16.6■□□□□ 0.25
CCDC40-209ENST00000573474 WTIPA6NIX2 430 aaPredicted RBP16.59■□□□□ 0.25
CCDC40-209ENST00000573474 GOLIM4O00461 696 aa16.59■□□□□ 0.25
CCDC40-209ENST00000573474 CHRNA5P30532 468 aa16.59■□□□□ 0.25
CCDC40-209ENST00000573474 MFAP1P55081 439 aaKnown RBP16.59■□□□□ 0.25
CCDC40-209ENST00000573474 FKBP4Q02790 459 aaKnown RBP eCLIP16.59■□□□□ 0.25
CCDC40-209ENST00000573474 SCARF1Q14162 830 aa16.59■□□□□ 0.25
CCDC40-209ENST00000573474 ILDR2Q71H61 639 aa16.59■□□□□ 0.25
CCDC40-209ENST00000573474 FBXO33Q7Z6M2 555 aa16.59■□□□□ 0.25
CCDC40-209ENST00000573474 EDC3Q96F86 508 aaKnown RBP16.59■□□□□ 0.25
CCDC40-209ENST00000573474 TMX4Q9H1E5 349 aaPredicted RBP16.59■□□□□ 0.25
CCDC40-209ENST00000573474 NDUFB9Q9Y6M9 179 aa16.59■□□□□ 0.25
CCDC40-209ENST00000573474 A0A1B0GUL6 1792 aa16.59■□□□□ 0.25
CCDC40-209ENST00000573474 PSDA5PKW4 1024 aaPredicted RBP16.58■□□□□ 0.24
CCDC40-209ENST00000573474 MCAMP43121 646 aa16.58■□□□□ 0.24
CCDC40-209ENST00000573474 ZAP70P43403 619 aa16.58■□□□□ 0.24
CCDC40-209ENST00000573474 C15orf52Q6ZUT6 534 aaKnown RBP16.58■□□□□ 0.24
CCDC40-209ENST00000573474 VPS37DQ86XT2 251 aa16.58■□□□□ 0.24
CCDC40-209ENST00000573474 KBTBD3Q8NAB2 608 aa16.58■□□□□ 0.24
CCDC40-209ENST00000573474 RUFY2Q8WXA3 655 aa16.58■□□□□ 0.24
CCDC40-209ENST00000573474 FAM84BQ96KN1 310 aaPredicted RBP16.58■□□□□ 0.24
CCDC40-209ENST00000573474 ESYT1Q9BSJ8 1104 aa16.58■□□□□ 0.24
CCDC40-209ENST00000573474 SNRKQ9NRH2 765 aa16.58■□□□□ 0.24
CCDC40-209ENST00000573474 DIAPH3Q9NSV4 1193 aa16.58■□□□□ 0.24
CCDC40-209ENST00000573474 GGA1Q9UJY5 639 aa16.58■□□□□ 0.24
CCDC40-209ENST00000573474 NSFL1CQ9UNZ2 370 aaKnown RBP16.58■□□□□ 0.24
CCDC40-209ENST00000573474 RFX7Q2KHR2 1363 aa16.58■□□□□ 0.24
CCDC40-209ENST00000573474 COL11A2P13942 1736 aaPredicted RBP16.58■□□□□ 0.24
CCDC40-209ENST00000573474 GYG1P46976 350 aa16.57■□□□□ 0.24
CCDC40-209ENST00000573474 TTF1Q15361 905 aaPredicted RBP16.57■□□□□ 0.24
CCDC40-209ENST00000573474 LRRFIP1Q32MZ4 808 aaKnown RBP16.57■□□□□ 0.24
CCDC40-209ENST00000573474 SPATA5Q8NB90 893 aa16.57■□□□□ 0.24
CCDC40-209ENST00000573474 HMG20BQ9P0W2 317 aa16.57■□□□□ 0.24
CCDC40-209ENST00000573474 IRS2Q9Y4H2 1338 aa16.56■□□□□ 0.24
CCDC40-209ENST00000573474 ZBTB22O15209 634 aa16.56■□□□□ 0.24
CCDC40-209ENST00000573474 UFL1O94874 794 aa16.56■□□□□ 0.24
CCDC40-209ENST00000573474 REC8O95072 547 aa16.56■□□□□ 0.24
CCDC40-209ENST00000573474 HIBADHP31937 336 aaKnown RBP16.56■□□□□ 0.24
CCDC40-209ENST00000573474 PRPF40BQ6NWY9 871 aaKnown RBP16.56■□□□□ 0.24
CCDC40-209ENST00000573474 SLC51AQ86UW1 340 aa16.56■□□□□ 0.24
CCDC40-209ENST00000573474 AK9Q5TCS8 1911 aa16.55■□□□□ 0.24
CCDC40-209ENST00000573474 SEMA3EO15041 775 aa16.55■□□□□ 0.24
CCDC40-209ENST00000573474 KLRK1P26718 216 aa16.55■□□□□ 0.24
CCDC40-209ENST00000573474 TGFB2P61812 414 aa16.55■□□□□ 0.24
CCDC40-209ENST00000573474 RASGRF1Q13972 1273 aa16.55■□□□□ 0.24
CCDC40-209ENST00000573474 CWC27Q6UX04 472 aaKnown RBP16.55■□□□□ 0.24
CCDC40-209ENST00000573474 PI16Q6UXB8 463 aa16.55■□□□□ 0.24
CCDC40-209ENST00000573474 MPNDQ8N594 471 aa16.55■□□□□ 0.24
CCDC40-209ENST00000573474 TBC1D16Q8TBP0 767 aa16.55■□□□□ 0.24
CCDC40-209ENST00000573474 ANTXR1Q9H6X2 564 aa16.55■□□□□ 0.24
CCDC40-209ENST00000573474 DENND2AQ9ULE3 1009 aa16.55■□□□□ 0.24
CCDC40-209ENST00000573474 SGSM2O43147 1006 aa16.54■□□□□ 0.24
CCDC40-209ENST00000573474 CYP2E1P05181 493 aaPredicted RBP16.54■□□□□ 0.24
CCDC40-209ENST00000573474 SGIP1Q9BQI5 828 aa16.54■□□□□ 0.24
CCDC40-209ENST00000573474 POLLQ9UGP5 575 aa16.54■□□□□ 0.24
CCDC40-209ENST00000573474 LRRC37AA6NMS7 1700 aa16.53■□□□□ 0.24
CCDC40-209ENST00000573474 C6orf229H3BNL8 230 aa16.53■□□□□ 0.24
CCDC40-209ENST00000573474 RNF113AO15541 343 aaKnown RBP16.53■□□□□ 0.24
CCDC40-209ENST00000573474 ZFYP08048 801 aaPredicted RBP16.53■□□□□ 0.24
CCDC40-209ENST00000573474 DPEP1P16444 411 aa16.53■□□□□ 0.24
CCDC40-209ENST00000573474 NMIQ13287 307 aaPredicted RBP16.53■□□□□ 0.24
CCDC40-209ENST00000573474 CC2D2BQ6DHV5 1058 aa16.53■□□□□ 0.24
CCDC40-209ENST00000573474 ZSCAN25Q6NSZ9 544 aa16.53■□□□□ 0.24
CCDC40-209ENST00000573474 DPP8Q6V1X1 898 aaPredicted RBP16.53■□□□□ 0.24
CCDC40-209ENST00000573474 ZNF804AQ7Z570 1209 aa16.53■□□□□ 0.24
CCDC40-209ENST00000573474 TXNRD3Q86VQ6 643 aa16.53■□□□□ 0.24
CCDC40-209ENST00000573474 TTLL6Q8N841 843 aa16.53■□□□□ 0.24
CCDC40-209ENST00000573474 C7orf43Q8WVR3 580 aa16.53■□□□□ 0.24
CCDC40-209ENST00000573474 TBC1D32Q96NH3 1257 aa16.53■□□□□ 0.24
CCDC40-209ENST00000573474 C22orf23Q9BZE7 217 aa16.53■□□□□ 0.24
CCDC40-209ENST00000573474 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.53■□□□□ 0.24
CCDC40-209ENST00000573474 PDS5AQ29RF7 1337 aaKnown RBP16.52■□□□□ 0.24
CCDC40-209ENST00000573474 RAD50Q92878 1312 aa16.52■□□□□ 0.24
CCDC40-209ENST00000573474 A0A0G2JLW4 131 aa16.52■□□□□ 0.24
CCDC40-209ENST00000573474 EPB41L2O43491 1005 aaKnown RBP16.52■□□□□ 0.24
CCDC40-209ENST00000573474 FRAT2O75474 233 aaPredicted RBP16.52■□□□□ 0.24
CCDC40-209ENST00000573474 KCNA3P22001 575 aa16.52■□□□□ 0.24
CCDC40-209ENST00000573474 FAM227BQ96M60 508 aa16.52■□□□□ 0.24
CCDC40-209ENST00000573474 USP26Q9BXU7 913 aa16.52■□□□□ 0.24
CCDC40-209ENST00000573474 PIH1D3Q9NQM4 214 aaKnown RBP16.52■□□□□ 0.24
CCDC40-209ENST00000573474 CD2APQ9Y5K6 639 aa16.52■□□□□ 0.24
CCDC40-209ENST00000573474 AKAP11Q9UKA4 1901 aa16.52■□□□□ 0.23
CCDC40-209ENST00000573474 MED23Q9ULK4 1368 aa16.51■□□□□ 0.23
CCDC40-209ENST00000573474 PTGER2P43116 358 aa16.51■□□□□ 0.23
CCDC40-209ENST00000573474 GRIPAP1Q4V328 841 aa16.51■□□□□ 0.23
CCDC40-209ENST00000573474 OLFM4Q6UX06 510 aa16.51■□□□□ 0.23
CCDC40-209ENST00000573474 KIAA1211Q6ZU35 1233 aa16.51■□□□□ 0.23
CCDC40-209ENST00000573474 HELLSQ9NRZ9 838 aa16.51■□□□□ 0.23
CCDC40-209ENST00000573474 IQSEC3Q9UPP2 1182 aaPredicted RBP16.51■□□□□ 0.23
CCDC40-209ENST00000573474 KIF13BQ9NQT8 1826 aa16.51■□□□□ 0.23
CCDC40-209ENST00000573474 A0A0D9SFI3 127 aa16.5■□□□□ 0.23
CCDC40-209ENST00000573474 RBM25P49756 843 aaKnown RBP16.5■□□□□ 0.23
CCDC40-209ENST00000573474 WASHC4Q2M389 1173 aa16.5■□□□□ 0.23
CCDC40-209ENST00000573474 MCMDC2Q4G0Z9 681 aa16.5■□□□□ 0.23
CCDC40-209ENST00000573474 ZMYM1Q5SVZ6 1142 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms