RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 TATDN2Q93075 761 aa9.62□□□□□ -0.87
NUP88-205ENST00000572809 KDM4CQ9H3R0 1056 aa9.62□□□□□ -0.87
NUP88-205ENST00000572809 HYPKQ9NX55 129 aa9.62□□□□□ -0.87
NUP88-205ENST00000572809 PNMA3Q9UL41 463 aa9.62□□□□□ -0.87
NUP88-205ENST00000572809 DLEC1Q9Y238 1755 aa9.62□□□□□ -0.87
NUP88-205ENST00000572809 KDM2BQ8NHM5 1336 aa9.61□□□□□ -0.87
NUP88-205ENST00000572809 NTSR2O95665 410 aa9.61□□□□□ -0.87
NUP88-205ENST00000572809 APLP1P51693 650 aa9.61□□□□□ -0.87
NUP88-205ENST00000572809 TCIRG1Q13488 830 aa9.61□□□□□ -0.87
NUP88-205ENST00000572809 SLC10A5Q5PT55 438 aa9.61□□□□□ -0.87
NUP88-205ENST00000572809 WWC1Q8IX03 1113 aa9.61□□□□□ -0.87
NUP88-205ENST00000572809 IL27Q8NEV9 243 aa9.61□□□□□ -0.87
NUP88-205ENST00000572809 PLBD2Q8NHP8 589 aa9.61□□□□□ -0.87
NUP88-205ENST00000572809 NLRP3Q96P20 1036 aa9.61□□□□□ -0.87
NUP88-205ENST00000572809 UTP14AQ9BVJ6 771 aaKnown RBP9.61□□□□□ -0.87
NUP88-205ENST00000572809 CHMP4AQ9BY43 222 aa9.61□□□□□ -0.87
NUP88-205ENST00000572809 RRAGCQ9HB90 399 aa9.61□□□□□ -0.87
NUP88-205ENST00000572809 NMRK2Q9NPI5 230 aa9.61□□□□□ -0.87
NUP88-205ENST00000572809 SBF1O95248 1867 aa9.6□□□□□ -0.87
NUP88-205ENST00000572809 TOMM70O94826 608 aa9.6□□□□□ -0.87
NUP88-205ENST00000572809 CRY2Q49AN0 593 aa9.6□□□□□ -0.87
NUP88-205ENST00000572809 NLRP10Q86W26 655 aa9.6□□□□□ -0.87
NUP88-205ENST00000572809 C8orf58Q8NAV2 365 aa9.6□□□□□ -0.87
NUP88-205ENST00000572809 RPGRQ92834 1020 aaKnown RBP9.6□□□□□ -0.87
NUP88-205ENST00000572809 RBM17Q96I25 401 aaKnown RBP9.6□□□□□ -0.87
NUP88-205ENST00000572809 TAOK3Q9H2K8 898 aa9.6□□□□□ -0.87
NUP88-205ENST00000572809 IBTKQ9P2D0 1353 aaPredicted RBP9.6□□□□□ -0.87
NUP88-205ENST00000572809 LTBP3Q9NS15 1303 aa9.59□□□□□ -0.87
NUP88-205ENST00000572809 ZC3H4Q9UPT8 1303 aaKnown RBP9.59□□□□□ -0.87
NUP88-205ENST00000572809 SLX4Q8IY92 1834 aa9.59□□□□□ -0.87
NUP88-205ENST00000572809 GLTPD2A6NH11 291 aa9.59□□□□□ -0.87
NUP88-205ENST00000572809 HOXA10P31260 410 aaPredicted RBP9.59□□□□□ -0.87
NUP88-205ENST00000572809 CCDC93Q567U6 631 aa9.59□□□□□ -0.87
NUP88-205ENST00000572809 C16orf71Q8IYS4 520 aaPredicted RBP9.59□□□□□ -0.87
NUP88-205ENST00000572809 RTKN2Q8IZC4 609 aa9.59□□□□□ -0.87
NUP88-205ENST00000572809 FAM9BQ8IZU0 186 aa9.59□□□□□ -0.87
NUP88-205ENST00000572809 CRAMP1Q96RY5 1269 aa9.59□□□□□ -0.87
NUP88-205ENST00000572809 PHAXQ9H814 394 aaKnown RBP9.59□□□□□ -0.87
NUP88-205ENST00000572809 TRMT112Q9UI30 125 aaKnown RBP9.59□□□□□ -0.87
NUP88-205ENST00000572809 SALL2Q9Y467 1007 aaPredicted RBP9.59□□□□□ -0.87
NUP88-205ENST00000572809 COL11A2P13942 1736 aaPredicted RBP9.59□□□□□ -0.87
NUP88-205ENST00000572809 RNF123Q5XPI4 1314 aa9.58□□□□□ -0.88
NUP88-205ENST00000572809 CCDC30Q5VVM6 783 aa9.58□□□□□ -0.88
NUP88-205ENST00000572809 OLFM4Q6UX06 510 aa9.58□□□□□ -0.88
NUP88-205ENST00000572809 RIC3Q7Z5B4 369 aa9.58□□□□□ -0.88
NUP88-205ENST00000572809 SYNE4Q8N205 404 aa9.58□□□□□ -0.88
NUP88-205ENST00000572809 TSPYL6Q8N831 410 aa9.58□□□□□ -0.88
NUP88-205ENST00000572809 TSR2Q969E8 191 aaKnown RBP9.58□□□□□ -0.88
NUP88-205ENST00000572809 CCDC102AQ96A19 550 aa9.58□□□□□ -0.88
NUP88-205ENST00000572809 ABCC12Q96J65 1359 aa9.58□□□□□ -0.88
NUP88-205ENST00000572809 IL16Q14005 1332 aa9.57□□□□□ -0.88
NUP88-205ENST00000572809 ATP5J2-PTCD1G3V325 749 aa9.57□□□□□ -0.88
NUP88-205ENST00000572809 HCLS1P14317 486 aaPredicted RBP9.57□□□□□ -0.88
NUP88-205ENST00000572809 GGCXP38435 758 aa9.57□□□□□ -0.88
NUP88-205ENST00000572809 COPS2P61201 443 aa9.57□□□□□ -0.88
NUP88-205ENST00000572809 FKBP4Q02790 459 aaKnown RBP eCLIP9.57□□□□□ -0.88
NUP88-205ENST00000572809 PTGDRQ13258 359 aa9.57□□□□□ -0.88
NUP88-205ENST00000572809 CC2D2BQ6DHV5 1058 aa9.57□□□□□ -0.88
NUP88-205ENST00000572809 WDR63Q8IWG1 891 aa9.57□□□□□ -0.88
NUP88-205ENST00000572809 ISCA1Q9BUE6 129 aa9.57□□□□□ -0.88
NUP88-205ENST00000572809 TMX4Q9H1E5 349 aaPredicted RBP9.57□□□□□ -0.88
NUP88-205ENST00000572809 FER1L6Q2WGJ9 1857 aa9.57□□□□□ -0.88
NUP88-205ENST00000572809 CCDC88AQ3V6T2 1871 aa9.57□□□□□ -0.88
NUP88-205ENST00000572809 SH3TC1Q8TE82 1336 aa9.56□□□□□ -0.88
NUP88-205ENST00000572809 RIC1Q4ADV7 1423 aa9.56□□□□□ -0.88
NUP88-205ENST00000572809 TCERG1O14776 1098 aaKnown RBP9.56□□□□□ -0.88
NUP88-205ENST00000572809 VEGFAP15692 232 aaPredicted RBP9.56□□□□□ -0.88
NUP88-205ENST00000572809 HSPA6P17066 643 aa9.56□□□□□ -0.88
NUP88-205ENST00000572809 TRIM28Q13263 835 aaKnown RBP9.56□□□□□ -0.88
NUP88-205ENST00000572809 TWISTNBQ3B726 338 aaPredicted RBP9.56□□□□□ -0.88
NUP88-205ENST00000572809 GRIPAP1Q4V328 841 aa9.56□□□□□ -0.88
NUP88-205ENST00000572809 ZNF428Q96B54 188 aa9.56□□□□□ -0.88
NUP88-205ENST00000572809 ZNF277Q9NRM2 450 aaPredicted RBP9.56□□□□□ -0.88
NUP88-205ENST00000572809 CACNA1SQ13698 1873 aa9.55□□□□□ -0.88
NUP88-205ENST00000572809 PPEF1O14829 653 aaPredicted RBP9.55□□□□□ -0.88
NUP88-205ENST00000572809 BBOX1O75936 387 aa9.55□□□□□ -0.88
NUP88-205ENST00000572809 DDX58O95786 925 aaKnown RBP9.55□□□□□ -0.88
NUP88-205ENST00000572809 IARSP41252 1262 aaKnown RBP9.55□□□□□ -0.88
NUP88-205ENST00000572809 AMHR2Q16671 573 aa9.55□□□□□ -0.88
NUP88-205ENST00000572809 NUDT18Q6ZVK8 323 aa9.55□□□□□ -0.88
NUP88-205ENST00000572809 DDX46Q7L014 1031 aaKnown RBP9.55□□□□□ -0.88
NUP88-205ENST00000572809 RBM46Q8TBY0 533 aaKnown RBP9.55□□□□□ -0.88
NUP88-205ENST00000572809 FAM89AQ96GI7 184 aa9.55□□□□□ -0.88
NUP88-205ENST00000572809 PSMD1Q99460 953 aa9.55□□□□□ -0.88
NUP88-205ENST00000572809 STK31Q9BXU1 1019 aa9.55□□□□□ -0.88
NUP88-205ENST00000572809 ARFGEF2Q9Y6D5 1785 aa9.55□□□□□ -0.88
NUP88-205ENST00000572809 POTECB2RU33 542 aa9.54□□□□□ -0.88
NUP88-205ENST00000572809 DDNO94850 711 aaPredicted RBP9.54□□□□□ -0.88
NUP88-205ENST00000572809 FSTL1Q12841 308 aa9.54□□□□□ -0.88
NUP88-205ENST00000572809 RTL5Q5HYW3 569 aaPredicted RBP9.54□□□□□ -0.88
NUP88-205ENST00000572809 SP8Q8IXZ3 490 aa9.54□□□□□ -0.88
NUP88-205ENST00000572809 CCDC191Q8NCU4 936 aa9.54□□□□□ -0.88
NUP88-205ENST00000572809 JDP2Q8WYK2 163 aa9.54□□□□□ -0.88
NUP88-205ENST00000572809 MYD88Q99836 296 aa9.54□□□□□ -0.88
NUP88-205ENST00000572809 METTL22Q9BUU2 404 aaPredicted RBP9.54□□□□□ -0.88
NUP88-205ENST00000572809 ATP6V0A2Q9Y487 856 aa9.54□□□□□ -0.88
NUP88-205ENST00000572809 TNRC6CQ9HCJ0 1690 aaKnown RBP9.54□□□□□ -0.88
NUP88-205ENST00000572809 IRS4O14654 1257 aaPredicted RBP9.53□□□□□ -0.88
NUP88-205ENST00000572809 VAMP4O75379 141 aa9.53□□□□□ -0.88
NUP88-205ENST00000572809 FECHP22830 423 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms