RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 LPIN2Q92539 896 aa27.2■■□□□ 1.94
CLN3-234ENST00000568472 GPBP1L1Q9HC44 474 aaPredicted RBP27.2■■□□□ 1.94
CLN3-234ENST00000568472 AKAP2Q9Y2D5 859 aa27.2■■□□□ 1.94
CLN3-234ENST00000568472 COL4A5P29400 1685 aa27.2■■□□□ 1.94
CLN3-234ENST00000568472 IRS2Q9Y4H2 1338 aa27.19■■□□□ 1.94
CLN3-234ENST00000568472 TIAM2Q8IVF5 1701 aa27.19■■□□□ 1.94
CLN3-234ENST00000568472 SNAP23O00161 211 aa27.19■■□□□ 1.94
CLN3-234ENST00000568472 FGFR2P21802 821 aa27.19■■□□□ 1.94
CLN3-234ENST00000568472 CXCL9Q07325 125 aa27.19■■□□□ 1.94
CLN3-234ENST00000568472 CIAPIN1Q6FI81 312 aa27.19■■□□□ 1.94
CLN3-234ENST00000568472 TXNRD3Q86VQ6 643 aa27.19■■□□□ 1.94
CLN3-234ENST00000568472 ZNF541Q9H0D2 1346 aa27.18■■□□□ 1.94
CLN3-234ENST00000568472 YDJCA8MPS7 323 aa27.18■■□□□ 1.94
CLN3-234ENST00000568472 SLC5A1P13866 664 aa27.18■■□□□ 1.94
CLN3-234ENST00000568472 OS9Q13438 667 aaPredicted RBP27.18■■□□□ 1.94
CLN3-234ENST00000568472 CAVIN4Q5BKX8 364 aa27.18■■□□□ 1.94
CLN3-234ENST00000568472 DDNO94850 711 aaPredicted RBP27.17■■□□□ 1.94
CLN3-234ENST00000568472 ERC1Q8IUD2 1116 aa27.17■■□□□ 1.94
CLN3-234ENST00000568472 L3MBTL3Q96JM7 780 aaPredicted RBP27.17■■□□□ 1.94
CLN3-234ENST00000568472 KLRK1P26718 216 aa27.16■■□□□ 1.94
CLN3-234ENST00000568472 HIBADHP31937 336 aaKnown RBP27.16■■□□□ 1.94
CLN3-234ENST00000568472 ATP2B3Q16720 1220 aa27.16■■□□□ 1.94
CLN3-234ENST00000568472 SIRT2Q8IXJ6 389 aa27.16■■□□□ 1.94
CLN3-234ENST00000568472 ZNF526Q8TF50 670 aaPredicted RBP27.16■■□□□ 1.94
CLN3-234ENST00000568472 CD209Q9NNX6 404 aa27.16■■□□□ 1.94
CLN3-234ENST00000568472 RAD17O75943 681 aa27.15■■□□□ 1.94
CLN3-234ENST00000568472 TFCP2Q12800 502 aa27.15■■□□□ 1.94
CLN3-234ENST00000568472 FAM84BQ96KN1 310 aaPredicted RBP27.15■■□□□ 1.94
CLN3-234ENST00000568472 GPR108Q9NPR9 543 aa27.15■■□□□ 1.94
CLN3-234ENST00000568472 GJA3Q9Y6H8 435 aa27.15■■□□□ 1.94
CLN3-234ENST00000568472 IQCA1LA6NCM1 817 aa27.14■■□□□ 1.94
CLN3-234ENST00000568472 IL1R1P14778 569 aa27.14■■□□□ 1.94
CLN3-234ENST00000568472 VEGFAP15692 232 aaPredicted RBP27.14■■□□□ 1.94
CLN3-234ENST00000568472 FBXO33Q7Z6M2 555 aa27.14■■□□□ 1.94
CLN3-234ENST00000568472 VPS37DQ86XT2 251 aa27.14■■□□□ 1.94
CLN3-234ENST00000568472 USP17L3A6NCW0 530 aa27.13■■□□□ 1.93
CLN3-234ENST00000568472 USP17L4A6NCW7 530 aa27.13■■□□□ 1.93
CLN3-234ENST00000568472 SASH1O94885 1247 aa27.13■■□□□ 1.93
CLN3-234ENST00000568472 VIL1P09327 827 aaKnown RBP27.13■■□□□ 1.93
CLN3-234ENST00000568472 USP17L1Q7RTZ2 530 aa27.13■■□□□ 1.93
CLN3-234ENST00000568472 RAB11FIP3O75154 756 aa27.12■■□□□ 1.93
CLN3-234ENST00000568472 RPS12P25398 132 aaKnown RBP27.12■■□□□ 1.93
CLN3-234ENST00000568472 STRIP1Q5VSL9 837 aa27.12■■□□□ 1.93
CLN3-234ENST00000568472 PSMD14O00487 310 aa27.11■■□□□ 1.93
CLN3-234ENST00000568472 GYG1P46976 350 aa27.11■■□□□ 1.93
CLN3-234ENST00000568472 A0A1B0GUL6 1792 aa27.11■■□□□ 1.93
CLN3-234ENST00000568472 CENPBP07199 599 aaPredicted RBP27.1■■□□□ 1.93
CLN3-234ENST00000568472 TDRD7Q8NHU6 1098 aaKnown RBP27.1■■□□□ 1.93
CLN3-234ENST00000568472 DPF2Q92785 391 aa27.1■■□□□ 1.93
CLN3-234ENST00000568472 RRAGCQ9HB90 399 aa27.1■■□□□ 1.93
CLN3-234ENST00000568472 KCNQ5Q9NR82 932 aa27.1■■□□□ 1.93
CLN3-234ENST00000568472 LMOD1P29536 600 aaPredicted RBP27.09■■□□□ 1.93
CLN3-234ENST00000568472 TTLL5Q6EMB2 1281 aa27.09■■□□□ 1.93
CLN3-234ENST00000568472 AGBL3Q8NEM8 1001 aa27.09■■□□□ 1.93
CLN3-234ENST00000568472 NMRK2Q9NPI5 230 aa27.09■■□□□ 1.93
CLN3-234ENST00000568472 GNL3LQ9NVN8 582 aaKnown RBP27.09■■□□□ 1.93
CLN3-234ENST00000568472 EXOC6BQ9Y2D4 811 aa27.09■■□□□ 1.93
CLN3-234ENST00000568472 PCDHB15Q9Y5E8 787 aa27.09■■□□□ 1.93
CLN3-234ENST00000568472 A0A1B0GUL7 405 aa27.08■■□□□ 1.93
CLN3-234ENST00000568472 ZBTB22O15209 634 aa27.08■■□□□ 1.93
CLN3-234ENST00000568472 TIMM10P62072 90 aa27.08■■□□□ 1.93
CLN3-234ENST00000568472 RSBN1LQ6PCB5 846 aaPredicted RBP27.08■■□□□ 1.93
CLN3-234ENST00000568472 HACL1Q9UJ83 578 aa27.08■■□□□ 1.93
CLN3-234ENST00000568472 MYO3BQ8WXR4 1341 aa27.08■■□□□ 1.93
CLN3-234ENST00000568472 GMPSP49915 693 aaPredicted RBP27.07■■□□□ 1.92
CLN3-234ENST00000568472 MMP14P50281 582 aa27.07■■□□□ 1.92
CLN3-234ENST00000568472 BCAMP50895 628 aa27.07■■□□□ 1.92
CLN3-234ENST00000568472 KIF1BPQ96EK5 621 aa27.07■■□□□ 1.92
CLN3-234ENST00000568472 WDR90Q96KV7 1748 aa27.07■■□□□ 1.92
CLN3-234ENST00000568472 ZNF609O15014 1411 aa27.07■■□□□ 1.92
CLN3-234ENST00000568472 POTECB2RU33 542 aa27.06■■□□□ 1.92
CLN3-234ENST00000568472 FRAT2O75474 233 aaPredicted RBP27.06■■□□□ 1.92
CLN3-234ENST00000568472 FKBP1AP62942 108 aaKnown RBP27.06■■□□□ 1.92
CLN3-234ENST00000568472 GTF2IP78347 998 aa27.06■■□□□ 1.92
CLN3-234ENST00000568472 DACT2Q5SW24 774 aa27.06■■□□□ 1.92
CLN3-234ENST00000568472 EXOC6Q8TAG9 804 aa27.06■■□□□ 1.92
CLN3-234ENST00000568472 NEUROD6Q96NK8 337 aa27.06■■□□□ 1.92
CLN3-234ENST00000568472 GPRC5DQ9NZD1 345 aa27.06■■□□□ 1.92
CLN3-234ENST00000568472 SCNN1DP51172 638 aa27.05■■□□□ 1.92
CLN3-234ENST00000568472 TNNI3KQ59H18 835 aa27.05■■□□□ 1.92
CLN3-234ENST00000568472 RHPN1Q8TCX5 695 aa27.05■■□□□ 1.92
CLN3-234ENST00000568472 XAGE2Q96GT9 111 aa27.05■■□□□ 1.92
CLN3-234ENST00000568472 DCTPP1Q9H773 170 aa27.05■■□□□ 1.92
CLN3-234ENST00000568472 FPGT-TNNI3KV9GXZ4 949 aa27.05■■□□□ 1.92
CLN3-234ENST00000568472 FAM205AQ6ZU69 1335 aa27.05■■□□□ 1.92
CLN3-234ENST00000568472 SEMA3EO15041 775 aa27.04■■□□□ 1.92
CLN3-234ENST00000568472 GORABQ5T7V8 394 aa27.04■■□□□ 1.92
CLN3-234ENST00000568472 PNMA8AQ86V59 439 aaPredicted RBP27.04■■□□□ 1.92
CLN3-234ENST00000568472 C16orf71Q8IYS4 520 aaPredicted RBP27.04■■□□□ 1.92
CLN3-234ENST00000568472 FBXW7Q969H0 707 aa27.04■■□□□ 1.92
CLN3-234ENST00000568472 H7C1D1 291 aa27.03■■□□□ 1.92
CLN3-234ENST00000568472 HDAC1Q13547 482 aaPredicted RBP27.03■■□□□ 1.92
CLN3-234ENST00000568472 TAF1DQ9H5J8 278 aaPredicted RBP27.03■■□□□ 1.92
CLN3-234ENST00000568472 CNOT7Q9UIV1 285 aaKnown RBP27.03■■□□□ 1.92
CLN3-234ENST00000568472 ZBTB12Q9Y330 459 aaPredicted RBP27.03■■□□□ 1.92
CLN3-234ENST00000568472 KIF3CO14782 793 aa27.02■■□□□ 1.92
CLN3-234ENST00000568472 EPHX2P34913 555 aa27.02■■□□□ 1.92
CLN3-234ENST00000568472 CCDC102BQ68D86 513 aa27.02■■□□□ 1.92
CLN3-234ENST00000568472 CLASRPQ8N2M8 674 aaKnown RBP27.02■■□□□ 1.92
CLN3-234ENST00000568472 TBC1D22AQ8WUA7 517 aa27.02■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms