RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 GGA1Q9UJY5 639 aa15.46■□□□□ 0.07
CLK3-222ENST00000568232 SSUH2Q9Y2M2 353 aa15.46■□□□□ 0.07
CLK3-222ENST00000568232 USP17L3A6NCW0 530 aa15.45■□□□□ 0.06
CLK3-222ENST00000568232 USP17L4A6NCW7 530 aa15.45■□□□□ 0.06
CLK3-222ENST00000568232 WTIPA6NIX2 430 aaPredicted RBP15.45■□□□□ 0.06
CLK3-222ENST00000568232 DLL1O00548 723 aa15.45■□□□□ 0.06
CLK3-222ENST00000568232 IRS4O14654 1257 aaPredicted RBP15.45■□□□□ 0.06
CLK3-222ENST00000568232 ALDH1A1P00352 501 aa15.45■□□□□ 0.06
CLK3-222ENST00000568232 NF2P35240 595 aa15.45■□□□□ 0.06
CLK3-222ENST00000568232 CAP1Q01518 475 aa15.45■□□□□ 0.06
CLK3-222ENST00000568232 USP17L1Q7RTZ2 530 aa15.45■□□□□ 0.06
CLK3-222ENST00000568232 IFNL1Q8IU54 200 aa15.45■□□□□ 0.06
CLK3-222ENST00000568232 CD99L2Q8TCZ2 262 aa15.45■□□□□ 0.06
CLK3-222ENST00000568232 ISCA1Q9BUE6 129 aa15.45■□□□□ 0.06
CLK3-222ENST00000568232 A0A0C4DFX4 3053 aa15.45■□□□□ 0.06
CLK3-222ENST00000568232 IGF2BP3O00425 579 aaKnown RBP eCLIP15.44■□□□□ 0.06
CLK3-222ENST00000568232 WNT10BO00744 389 aa15.44■□□□□ 0.06
CLK3-222ENST00000568232 LDLRAD1Q5T700 205 aa15.44■□□□□ 0.06
CLK3-222ENST00000568232 ARMC9Q7Z3E5 817 aa15.44■□□□□ 0.06
CLK3-222ENST00000568232 ARMC5Q96C12 935 aa15.44■□□□□ 0.06
CLK3-222ENST00000568232 ANGEL1Q9UNK9 670 aaKnown RBP15.44■□□□□ 0.06
CLK3-222ENST00000568232 H0YGN5 161 aa15.43■□□□□ 0.06
CLK3-222ENST00000568232 SASH1O94885 1247 aa15.43■□□□□ 0.06
CLK3-222ENST00000568232 KRT24Q2M2I5 525 aa15.43■□□□□ 0.06
CLK3-222ENST00000568232 OTUD5Q96G74 571 aa15.43■□□□□ 0.06
CLK3-222ENST00000568232 ANKRD13DQ6ZTN6 518 aa15.42■□□□□ 0.06
CLK3-222ENST00000568232 PLBD2Q8NHP8 589 aa15.42■□□□□ 0.06
CLK3-222ENST00000568232 CHPF2Q9P2E5 772 aa15.42■□□□□ 0.06
CLK3-222ENST00000568232 RANBP2P49792 3224 aaKnown RBP15.41■□□□□ 0.06
CLK3-222ENST00000568232 MANSC4A6NHS7 340 aaPredicted RBP15.41■□□□□ 0.06
CLK3-222ENST00000568232 PODNQ7Z5L7 613 aa15.41■□□□□ 0.06
CLK3-222ENST00000568232 SLC10A4Q96EP9 437 aa15.41■□□□□ 0.06
CLK3-222ENST00000568232 ERO1AQ96HE7 468 aa15.41■□□□□ 0.06
CLK3-222ENST00000568232 CLMNQ96JQ2 1002 aa15.41■□□□□ 0.06
CLK3-222ENST00000568232 CCDC85AQ96PX6 553 aaPredicted RBP15.41■□□□□ 0.06
CLK3-222ENST00000568232 TMEM106CQ9BVX2 250 aa15.41■□□□□ 0.06
CLK3-222ENST00000568232 EFCC1Q9HA90 598 aa15.41■□□□□ 0.06
CLK3-222ENST00000568232 RBBP6Q7Z6E9 1792 aaKnown RBP15.41■□□□□ 0.06
CLK3-222ENST00000568232 MYCP01106 439 aaPredicted RBP15.4■□□□□ 0.06
CLK3-222ENST00000568232 FXR2P51116 673 aaKnown RBP eCLIP15.4■□□□□ 0.06
CLK3-222ENST00000568232 INHBEP58166 350 aa15.4■□□□□ 0.06
CLK3-222ENST00000568232 CRHR2Q13324 411 aa15.4■□□□□ 0.06
CLK3-222ENST00000568232 DACT2Q5SW24 774 aa15.4■□□□□ 0.06
CLK3-222ENST00000568232 SLC17A8Q8NDX2 589 aa15.4■□□□□ 0.06
CLK3-222ENST00000568232 FBXW7Q969H0 707 aa15.4■□□□□ 0.06
CLK3-222ENST00000568232 COL6A3P12111 3177 aa15.4■□□□□ 0.06
CLK3-222ENST00000568232 OGFOD1Q8N543 542 aa15.39■□□□□ 0.05
CLK3-222ENST00000568232 WNK4Q96J92 1243 aa15.39■□□□□ 0.05
CLK3-222ENST00000568232 ZNF333Q96JL9 665 aa15.39■□□□□ 0.05
CLK3-222ENST00000568232 SP3Q02447 781 aa15.38■□□□□ 0.05
CLK3-222ENST00000568232 JARID2Q92833 1246 aaPredicted RBP15.38■□□□□ 0.05
CLK3-222ENST00000568232 XDHP47989 1333 aa15.38■□□□□ 0.05
CLK3-222ENST00000568232 MAPK8IP3Q9UPT6 1336 aa15.38■□□□□ 0.05
CLK3-222ENST00000568232 PSME4Q14997 1843 aa15.38■□□□□ 0.05
CLK3-222ENST00000568232 KIAA0100Q14667 2235 aaKnown RBP15.37■□□□□ 0.05
CLK3-222ENST00000568232 ATP2B4P23634 1241 aa15.37■□□□□ 0.05
CLK3-222ENST00000568232 RIPK4P57078 832 aa15.37■□□□□ 0.05
CLK3-222ENST00000568232 SLC4A8Q2Y0W8 1093 aa15.37■□□□□ 0.05
CLK3-222ENST00000568232 PTPN18Q99952 460 aa15.37■□□□□ 0.05
CLK3-222ENST00000568232 RBM27Q9P2N5 1060 aaKnown RBP15.37■□□□□ 0.05
CLK3-222ENST00000568232 ZBTB48P10074 688 aaPredicted RBP15.36■□□□□ 0.05
CLK3-222ENST00000568232 GJA5P36382 358 aa15.36■□□□□ 0.05
CLK3-222ENST00000568232 TRIM28Q13263 835 aaKnown RBP15.36■□□□□ 0.05
CLK3-222ENST00000568232 APOBEC3FQ8IUX4 373 aaKnown RBP15.36■□□□□ 0.05
CLK3-222ENST00000568232 ZBTB38Q8NAP3 1195 aaPredicted RBP15.36■□□□□ 0.05
CLK3-222ENST00000568232 BABAM1Q9NWV8 329 aa15.36■□□□□ 0.05
CLK3-222ENST00000568232 PTCH2Q9Y6C5 1203 aa15.36■□□□□ 0.05
CLK3-222ENST00000568232 TRIOBPQ9H2D6 2365 aa15.36■□□□□ 0.05
CLK3-222ENST00000568232 SLC9C1Q4G0N8 1177 aa15.35■□□□□ 0.05
CLK3-222ENST00000568232 CCDC152Q4G0S7 254 aa15.35■□□□□ 0.05
CLK3-222ENST00000568232 HDGFL1Q5TGJ6 251 aa15.35■□□□□ 0.05
CLK3-222ENST00000568232 KIAA0825Q8IV33 1275 aa15.35■□□□□ 0.05
CLK3-222ENST00000568232 ZBED3Q96IU2 234 aaPredicted RBP15.35■□□□□ 0.05
CLK3-222ENST00000568232 DEFB129Q9H1M3 183 aa15.35■□□□□ 0.05
CLK3-222ENST00000568232 SSC5DA1L4H1 1573 aa15.34■□□□□ 0.05
CLK3-222ENST00000568232 MAP3K11Q16584 847 aa15.34■□□□□ 0.05
CLK3-222ENST00000568232 STRIP1Q5VSL9 837 aa15.34■□□□□ 0.05
CLK3-222ENST00000568232 TXNRD3Q86VQ6 643 aa15.34■□□□□ 0.05
CLK3-222ENST00000568232 ANKRD18AQ8IVF6 992 aa15.34■□□□□ 0.05
CLK3-222ENST00000568232 OTUD7BQ6GQQ9 843 aa15.33■□□□□ 0.04
CLK3-222ENST00000568232 NBPF11Q86T75 865 aa15.33■□□□□ 0.04
CLK3-222ENST00000568232 PCDHAC2Q9Y5I4 1007 aa15.33■□□□□ 0.04
CLK3-222ENST00000568232 MYO3BQ8WXR4 1341 aa15.33■□□□□ 0.04
CLK3-222ENST00000568232 MED23Q9ULK4 1368 aa15.33■□□□□ 0.04
CLK3-222ENST00000568232 ZNF646O15015 1829 aaPredicted RBP15.32■□□□□ 0.04
CLK3-222ENST00000568232 PPP1R12BO60237 982 aaPredicted RBP15.32■□□□□ 0.04
CLK3-222ENST00000568232 PDE8AO60658 829 aa15.32■□□□□ 0.04
CLK3-222ENST00000568232 TTLL5Q6EMB2 1281 aa15.32■□□□□ 0.04
CLK3-222ENST00000568232 SH3TC2Q8TF17 1288 aa15.32■□□□□ 0.04
CLK3-222ENST00000568232 DBF4Q9UBU7 674 aaPredicted RBP15.32■□□□□ 0.04
CLK3-222ENST00000568232 MINPP1Q9UNW1 487 aa15.32■□□□□ 0.04
CLK3-222ENST00000568232 LAS1LQ9Y4W2 734 aaKnown RBP15.32■□□□□ 0.04
CLK3-222ENST00000568232 CEP290O15078 2479 aa15.32■□□□□ 0.04
CLK3-222ENST00000568232 CHL1O00533 1208 aa15.31■□□□□ 0.04
CLK3-222ENST00000568232 RIC3Q7Z5B4 369 aa15.31■□□□□ 0.04
CLK3-222ENST00000568232 CCER1Q8TC90 406 aaPredicted RBP15.31■□□□□ 0.04
CLK3-222ENST00000568232 DPF3Q92784 378 aa15.31■□□□□ 0.04
CLK3-222ENST00000568232 MYD88Q99836 296 aa15.31■□□□□ 0.04
CLK3-222ENST00000568232 COA1Q9GZY4 146 aa15.31■□□□□ 0.04
CLK3-222ENST00000568232 PNNQ9H307 717 aaKnown RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms