RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 WNT8BQ93098 351 aa5.69□□□□□ -1.5
VPS35-207ENST00000568191 EGFL7Q9UHF1 273 aa5.69□□□□□ -1.5
VPS35-207ENST00000568191 POLIQ9UNA4 740 aa5.69□□□□□ -1.5
VPS35-207ENST00000568191 PDE2AO00408 941 aaPredicted RBP5.68□□□□□ -1.5
VPS35-207ENST00000568191 FSCN2O14926 492 aa5.68□□□□□ -1.5
VPS35-207ENST00000568191 NOS3P29474 1203 aa5.68□□□□□ -1.5
VPS35-207ENST00000568191 CDC25BP30305 580 aa5.68□□□□□ -1.5
VPS35-207ENST00000568191 MTMR3Q13615 1198 aa5.68□□□□□ -1.5
VPS35-207ENST00000568191 C1orf127Q8N9H9 656 aa5.68□□□□□ -1.5
VPS35-207ENST00000568191 ARID3AQ99856 593 aa5.68□□□□□ -1.5
VPS35-207ENST00000568191 ADAM19Q9H013 955 aa5.68□□□□□ -1.5
VPS35-207ENST00000568191 GGNBP2Q9H3C7 697 aa5.68□□□□□ -1.5
VPS35-207ENST00000568191 SEC31BQ9NQW1 1179 aa5.68□□□□□ -1.5
VPS35-207ENST00000568191 CNTN3Q9P232 1028 aa5.68□□□□□ -1.5
VPS35-207ENST00000568191 KANSL3Q9P2N6 904 aa5.68□□□□□ -1.5
VPS35-207ENST00000568191 SALL4Q9UJQ4 1053 aa5.68□□□□□ -1.5
VPS35-207ENST00000568191 BRPF3Q9ULD4 1205 aa5.68□□□□□ -1.5
VPS35-207ENST00000568191 F8W735 103 aaPredicted RBP5.67□□□□□ -1.5
VPS35-207ENST00000568191 H3BRJ5 948 aa5.67□□□□□ -1.5
VPS35-207ENST00000568191 GLB1P16278 677 aa5.67□□□□□ -1.5
VPS35-207ENST00000568191 PIP4K2BP78356 416 aa5.67□□□□□ -1.5
VPS35-207ENST00000568191 DUOXA2Q1HG44 320 aa5.67□□□□□ -1.5
VPS35-207ENST00000568191 PRSS36Q5K4E3 855 aa5.67□□□□□ -1.5
VPS35-207ENST00000568191 GLYCTKQ8IVS8 523 aa5.67□□□□□ -1.5
VPS35-207ENST00000568191 POP1Q99575 1024 aaKnown RBP5.67□□□□□ -1.5
VPS35-207ENST00000568191 OSGEPQ9NPF4 335 aa5.67□□□□□ -1.5
VPS35-207ENST00000568191 NDUFB5O43674 189 aa5.66□□□□□ -1.5
VPS35-207ENST00000568191 TNFRSF21O75509 655 aa5.66□□□□□ -1.5
VPS35-207ENST00000568191 PDE3BQ13370 1112 aa5.66□□□□□ -1.5
VPS35-207ENST00000568191 OSMRQ99650 979 aa5.66□□□□□ -1.5
VPS35-207ENST00000568191 SSBP4Q9BWG4 385 aaPredicted RBP5.66□□□□□ -1.5
VPS35-207ENST00000568191 SH2B1Q9NRF2 756 aaPredicted RBP5.66□□□□□ -1.5
VPS35-207ENST00000568191 DZANK1Q9NVP4 752 aa5.66□□□□□ -1.5
VPS35-207ENST00000568191 AMOTL2Q9Y2J4 779 aa5.66□□□□□ -1.5
VPS35-207ENST00000568191 SUPT5HO00267 1087 aaKnown RBP5.65□□□□□ -1.5
VPS35-207ENST00000568191 GSC2O15499 205 aa5.65□□□□□ -1.5
VPS35-207ENST00000568191 SART1O43290 800 aaKnown RBP5.65□□□□□ -1.5
VPS35-207ENST00000568191 ICMTO60725 284 aa5.65□□□□□ -1.5
VPS35-207ENST00000568191 ZNF211Q13398 564 aaPredicted RBP5.65□□□□□ -1.5
VPS35-207ENST00000568191 PHLDB3Q6NSJ2 640 aa5.65□□□□□ -1.5
VPS35-207ENST00000568191 TXNDC11Q6PKC3 985 aa5.65□□□□□ -1.5
VPS35-207ENST00000568191 ACAD11Q709F0 780 aa5.65□□□□□ -1.5
VPS35-207ENST00000568191 DZIP1LQ8IYY4 767 aaKnown RBP5.65□□□□□ -1.5
VPS35-207ENST00000568191 Q8N3U1 123 aa5.65□□□□□ -1.5
VPS35-207ENST00000568191 TMEM102Q8N9M5 508 aaPredicted RBP5.65□□□□□ -1.5
VPS35-207ENST00000568191 CCER1Q8TC90 406 aaPredicted RBP5.65□□□□□ -1.5
VPS35-207ENST00000568191 BSNDQ8WZ55 320 aa5.65□□□□□ -1.5
VPS35-207ENST00000568191 ANO2Q9NQ90 1003 aa5.65□□□□□ -1.5
VPS35-207ENST00000568191 A6NHS1 94 aa5.64□□□□□ -1.51
VPS35-207ENST00000568191 H3BRB1 525 aa5.64□□□□□ -1.51
VPS35-207ENST00000568191 DHX15O43143 795 aaKnown RBP5.64□□□□□ -1.51
VPS35-207ENST00000568191 ALX3O95076 343 aa5.64□□□□□ -1.51
VPS35-207ENST00000568191 EPHA1P21709 976 aa5.64□□□□□ -1.51
VPS35-207ENST00000568191 C19orf57Q0VDD7 668 aa5.64□□□□□ -1.51
VPS35-207ENST00000568191 UVSSAQ2YD98 709 aa5.64□□□□□ -1.51
VPS35-207ENST00000568191 PRR23CQ6ZRP0 262 aa5.64□□□□□ -1.51
VPS35-207ENST00000568191 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.64□□□□□ -1.51
VPS35-207ENST00000568191 SLC7A3Q8WY07 619 aa5.64□□□□□ -1.51
VPS35-207ENST00000568191 MEGF10Q96KG7 1140 aa5.64□□□□□ -1.51
VPS35-207ENST00000568191 CITED4Q96RK1 184 aa5.64□□□□□ -1.51
VPS35-207ENST00000568191 CARD10Q9BWT7 1032 aa5.64□□□□□ -1.51
VPS35-207ENST00000568191 TUT1Q9H6E5 874 aaKnown RBP5.64□□□□□ -1.51
VPS35-207ENST00000568191 CARNS1A5YM72 827 aa5.63□□□□□ -1.51
VPS35-207ENST00000568191 EREGO14944 169 aa5.63□□□□□ -1.51
VPS35-207ENST00000568191 FZD6O60353 706 aa5.63□□□□□ -1.51
VPS35-207ENST00000568191 IKBKEQ14164 716 aa5.63□□□□□ -1.51
VPS35-207ENST00000568191 NBPF11Q86T75 865 aa5.63□□□□□ -1.51
VPS35-207ENST00000568191 GJD3Q8N144 294 aa5.63□□□□□ -1.51
VPS35-207ENST00000568191 GALNT11Q8NCW6 608 aa5.63□□□□□ -1.51
VPS35-207ENST00000568191 DDX54Q8TDD1 881 aaKnown RBP5.63□□□□□ -1.51
VPS35-207ENST00000568191 TMC1Q8TDI8 760 aa5.63□□□□□ -1.51
VPS35-207ENST00000568191 ASAP3Q8TDY4 903 aa5.63□□□□□ -1.51
VPS35-207ENST00000568191 NXPE3Q969Y0 559 aa5.63□□□□□ -1.51
VPS35-207ENST00000568191 ZFYVE28Q9HCC9 887 aa5.63□□□□□ -1.51
VPS35-207ENST00000568191 CCDC87Q9NVE4 849 aa5.63□□□□□ -1.51
VPS35-207ENST00000568191 STOML1Q9UBI4 398 aa5.63□□□□□ -1.51
VPS35-207ENST00000568191 ANKRD34AQ69YU3 496 aa5.62□□□□□ -1.51
VPS35-207ENST00000568191 AGGF1Q8N302 714 aaeCLIP5.62□□□□□ -1.51
VPS35-207ENST00000568191 KLHDC7BQ96G42 594 aa5.62□□□□□ -1.51
VPS35-207ENST00000568191 ZKSCAN3Q9BRR0 538 aa5.62□□□□□ -1.51
VPS35-207ENST00000568191 KRTAP4-8Q9BYQ9 185 aa5.62□□□□□ -1.51
VPS35-207ENST00000568191 RNF208Q9H0X6 261 aa5.62□□□□□ -1.51
VPS35-207ENST00000568191 CHRDQ9H2X0 955 aa5.62□□□□□ -1.51
VPS35-207ENST00000568191 ZFYVE1Q9HBF4 777 aa5.62□□□□□ -1.51
VPS35-207ENST00000568191 ZFP64Q9NPA5 681 aa5.62□□□□□ -1.51
VPS35-207ENST00000568191 RAXQ9Y2V3 346 aa5.62□□□□□ -1.51
VPS35-207ENST00000568191 NFKBIEO00221 500 aa5.61□□□□□ -1.51
VPS35-207ENST00000568191 ITGB7P26010 798 aa5.61□□□□□ -1.51
VPS35-207ENST00000568191 FOXD4L6Q3SYB3 417 aaPredicted RBP5.61□□□□□ -1.51
VPS35-207ENST00000568191 HP1BP3Q5SSJ5 553 aaPredicted RBP5.61□□□□□ -1.51
VPS35-207ENST00000568191 FDX2Q6P4F2 183 aa5.61□□□□□ -1.51
VPS35-207ENST00000568191 FOXD4L3Q6VB84 417 aaPredicted RBP5.61□□□□□ -1.51
VPS35-207ENST00000568191 Q6ZS46 218 aa5.61□□□□□ -1.51
VPS35-207ENST00000568191 UTP4Q969X6 686 aaKnown RBP5.61□□□□□ -1.51
VPS35-207ENST00000568191 RUSC1Q9BVN2 902 aa5.61□□□□□ -1.51
VPS35-207ENST00000568191 FOXD3Q9UJU5 478 aaPredicted RBP5.61□□□□□ -1.51
VPS35-207ENST00000568191 GAS2O43903 313 aaKnown RBP5.6□□□□□ -1.51
VPS35-207ENST00000568191 FSTP19883 344 aa5.6□□□□□ -1.51
VPS35-207ENST00000568191 NLRP12P59046 1061 aa5.6□□□□□ -1.51
VPS35-207ENST00000568191 LRP8Q14114 963 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms