RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 USP17L8P0C7I0 530 aa20.5■□□□□ 0.87
CLN3-229ENST00000567963 HUNKP57058 714 aa20.5■□□□□ 0.87
CLN3-229ENST00000567963 FAM161AQ3B820 660 aa20.5■□□□□ 0.87
CLN3-229ENST00000567963 GGA3Q9NZ52 723 aa20.5■□□□□ 0.87
CLN3-229ENST00000567963 LEMD3Q9Y2U8 911 aa20.5■□□□□ 0.87
CLN3-229ENST00000567963 ASTN2O75129 1339 aaPredicted RBP20.49■□□□□ 0.87
CLN3-229ENST00000567963 SCARF1Q14162 830 aa20.49■□□□□ 0.87
CLN3-229ENST00000567963 SULF1Q8IWU6 871 aa20.49■□□□□ 0.87
CLN3-229ENST00000567963 MPHOSPH8Q99549 860 aa20.49■□□□□ 0.87
CLN3-229ENST00000567963 GBA2Q9HCG7 927 aaPredicted RBP20.49■□□□□ 0.87
CLN3-229ENST00000567963 F6X3S4 739 aa20.48■□□□□ 0.87
CLN3-229ENST00000567963 BEND3Q5T5X7 828 aa20.48■□□□□ 0.87
CLN3-229ENST00000567963 TXNRD3Q86VQ6 643 aa20.48■□□□□ 0.87
CLN3-229ENST00000567963 C2orf69Q8N8R5 385 aa20.48■□□□□ 0.87
CLN3-229ENST00000567963 ANKRD2Q9GZV1 360 aa20.48■□□□□ 0.87
CLN3-229ENST00000567963 COA1Q9GZY4 146 aa20.48■□□□□ 0.87
CLN3-229ENST00000567963 MYOZ2Q9NPC6 264 aa20.48■□□□□ 0.87
CLN3-229ENST00000567963 BRPF1P55201 1214 aaPredicted RBP20.47■□□□□ 0.87
CLN3-229ENST00000567963 ANGEL2Q5VTE6 544 aaKnown RBP20.47■□□□□ 0.87
CLN3-229ENST00000567963 ZNF804BA4D1E1 1349 aa20.46■□□□□ 0.87
CLN3-229ENST00000567963 NOGQ13253 232 aa20.46■□□□□ 0.87
CLN3-229ENST00000567963 DACT2Q5SW24 774 aa20.46■□□□□ 0.87
CLN3-229ENST00000567963 CA12O43570 354 aa20.45■□□□□ 0.86
CLN3-229ENST00000567963 FOXO4P98177 505 aa20.45■□□□□ 0.86
CLN3-229ENST00000567963 STRIP1Q5VSL9 837 aa20.45■□□□□ 0.86
CLN3-229ENST00000567963 RGMBQ6NW40 437 aa20.45■□□□□ 0.86
CLN3-229ENST00000567963 ANKRD18BA2A2Z9 1011 aa20.44■□□□□ 0.86
CLN3-229ENST00000567963 CHRNDQ07001 517 aa20.44■□□□□ 0.86
CLN3-229ENST00000567963 ZIC5Q96T25 663 aa20.44■□□□□ 0.86
CLN3-229ENST00000567963 MXD3Q9BW11 206 aa20.44■□□□□ 0.86
CLN3-229ENST00000567963 TSKSQ9UJT2 592 aa20.44■□□□□ 0.86
CLN3-229ENST00000567963 ZNF646O15015 1829 aaPredicted RBP20.44■□□□□ 0.86
CLN3-229ENST00000567963 FAM155AB1AL88 458 aaPredicted RBP20.43■□□□□ 0.86
CLN3-229ENST00000567963 KLRK1P26718 216 aa20.43■□□□□ 0.86
CLN3-229ENST00000567963 CDCA5Q96FF9 252 aa20.43■□□□□ 0.86
CLN3-229ENST00000567963 MYO3BQ8WXR4 1341 aa20.43■□□□□ 0.86
CLN3-229ENST00000567963 PITPNM2Q9BZ72 1349 aa20.43■□□□□ 0.86
CLN3-229ENST00000567963 IFIT5Q13325 482 aaKnown RBP20.43■□□□□ 0.86
CLN3-229ENST00000567963 TTLL5Q6EMB2 1281 aa20.43■□□□□ 0.86
CLN3-229ENST00000567963 OGFOD1Q8N543 542 aa20.43■□□□□ 0.86
CLN3-229ENST00000567963 FBXW7Q969H0 707 aa20.43■□□□□ 0.86
CLN3-229ENST00000567963 NBPF9Q3BBW0 867 aa20.42■□□□□ 0.86
CLN3-229ENST00000567963 CCDC102AQ96A19 550 aa20.42■□□□□ 0.86
CLN3-229ENST00000567963 ZNF521Q96K83 1311 aa20.41■□□□□ 0.86
CLN3-229ENST00000567963 GRM8O00222 908 aa20.41■□□□□ 0.86
CLN3-229ENST00000567963 KCNJ4P48050 445 aa20.41■□□□□ 0.86
CLN3-229ENST00000567963 ZNF157P51786 506 aaPredicted RBP20.41■□□□□ 0.86
CLN3-229ENST00000567963 CHMP3Q9Y3E7 222 aa20.41■□□□□ 0.86
CLN3-229ENST00000567963 TAF5LO75529 589 aa20.4■□□□□ 0.86
CLN3-229ENST00000567963 MMP14P50281 582 aa20.4■□□□□ 0.86
CLN3-229ENST00000567963 EPHA10Q5JZY3 1008 aa20.4■□□□□ 0.86
CLN3-229ENST00000567963 LMBR1LQ6UX01 489 aa20.4■□□□□ 0.86
CLN3-229ENST00000567963 SNAP23O00161 211 aa20.39■□□□□ 0.85
CLN3-229ENST00000567963 WNT10BO00744 389 aa20.39■□□□□ 0.85
CLN3-229ENST00000567963 ALDH1L1O75891 902 aa20.39■□□□□ 0.85
CLN3-229ENST00000567963 HELBQ8NG08 1087 aaPredicted RBP20.39■□□□□ 0.85
CLN3-229ENST00000567963 CD209Q9NNX6 404 aa20.39■□□□□ 0.85
CLN3-229ENST00000567963 C9orf78Q9NZ63 289 aaPredicted RBP20.39■□□□□ 0.85
CLN3-229ENST00000567963 SCAF8Q9UPN6 1271 aaKnown RBP20.39■□□□□ 0.85
CLN3-229ENST00000567963 IRS2Q9Y4H2 1338 aa20.39■□□□□ 0.85
CLN3-229ENST00000567963 FKBP1BP68106 108 aa20.38■□□□□ 0.85
CLN3-229ENST00000567963 GTF2IP78347 998 aa20.38■□□□□ 0.85
CLN3-229ENST00000567963 SLC4A10Q6U841 1118 aa20.38■□□□□ 0.85
CLN3-229ENST00000567963 C15orf52Q6ZUT6 534 aaKnown RBP20.38■□□□□ 0.85
CLN3-229ENST00000567963 ABHD8Q96I13 439 aa20.38■□□□□ 0.85
CLN3-229ENST00000567963 KIF23Q02241 960 aaPredicted RBP20.37■□□□□ 0.85
CLN3-229ENST00000567963 CCDC57Q2TAC2 916 aa20.37■□□□□ 0.85
CLN3-229ENST00000567963 SRCIN1Q9C0H9 1055 aa20.37■□□□□ 0.85
CLN3-229ENST00000567963 SLC10A3P09131 477 aa20.37■□□□□ 0.85
CLN3-229ENST00000567963 LDHAL6AQ6ZMR3 332 aa20.37■□□□□ 0.85
CLN3-229ENST00000567963 KIAA0825Q8IV33 1275 aa20.37■□□□□ 0.85
CLN3-229ENST00000567963 ZNF594Q96JF6 807 aaPredicted RBP20.37■□□□□ 0.85
CLN3-229ENST00000567963 A0A1B0GUL6 1792 aa20.36■□□□□ 0.85
CLN3-229ENST00000567963 CASP8AP2Q9UKL3 1982 aa20.36■□□□□ 0.85
CLN3-229ENST00000567963 PRAMEF18Q5VWM3 479 aa20.36■□□□□ 0.85
CLN3-229ENST00000567963 HDAC9Q9UKV0 1011 aa20.36■□□□□ 0.85
CLN3-229ENST00000567963 TAF7LQ5H9L4 462 aa20.35■□□□□ 0.85
CLN3-229ENST00000567963 PAPPA2Q9BXP8 1791 aa20.35■□□□□ 0.85
CLN3-229ENST00000567963 SASH1O94885 1247 aa20.34■□□□□ 0.85
CLN3-229ENST00000567963 IL1R1P14778 569 aa20.34■□□□□ 0.85
CLN3-229ENST00000567963 ZBED3Q96IU2 234 aaPredicted RBP20.34■□□□□ 0.85
CLN3-229ENST00000567963 CSRNP1Q96S65 589 aa20.34■□□□□ 0.85
CLN3-229ENST00000567963 MOB2Q70IA6 237 aa20.33■□□□□ 0.85
CLN3-229ENST00000567963 ZNF804AQ7Z570 1209 aa20.33■□□□□ 0.85
CLN3-229ENST00000567963 KAZALD1Q96I82 304 aa20.33■□□□□ 0.85
CLN3-229ENST00000567963 CNNM1Q9NRU3 951 aa20.33■□□□□ 0.85
CLN3-229ENST00000567963 SAGE1Q9NXZ1 904 aa20.33■□□□□ 0.85
CLN3-229ENST00000567963 PLIN1O60240 522 aa20.32■□□□□ 0.84
CLN3-229ENST00000567963 NBPF7P0C2Y1 421 aaPredicted RBP20.32■□□□□ 0.84
CLN3-229ENST00000567963 RASAL3Q86YV0 1011 aa20.32■□□□□ 0.84
CLN3-229ENST00000567963 CERS5Q8N5B7 392 aa20.32■□□□□ 0.84
CLN3-229ENST00000567963 MRPL50Q8N5N7 158 aaKnown RBP20.32■□□□□ 0.84
CLN3-229ENST00000567963 SUCLG2Q96I99 432 aa20.32■□□□□ 0.84
CLN3-229ENST00000567963 RNF186Q9NXI6 227 aa20.32■□□□□ 0.84
CLN3-229ENST00000567963 UTYO14607 1347 aa20.32■□□□□ 0.84
CLN3-229ENST00000567963 REM2Q8IYK8 340 aaPredicted RBP20.31■□□□□ 0.84
CLN3-229ENST00000567963 AKAP11Q9UKA4 1901 aa20.31■□□□□ 0.84
CLN3-229ENST00000567963 E9PSI1 815 aa20.3■□□□□ 0.84
CLN3-229ENST00000567963 UBE2Q2LH0YL09 131 aa20.3■□□□□ 0.84
CLN3-229ENST00000567963 TRPA1O75762 1119 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms