RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 PPIP5K2O43314 1243 aa13.66□□□□□ -0.22
CLN3-224ENST00000566816 HIBADHP31937 336 aaKnown RBP13.66□□□□□ -0.22
CLN3-224ENST00000566816 SLC51AQ86UW1 340 aa13.66□□□□□ -0.22
CLN3-224ENST00000566816 LARGE2Q8N3Y3 721 aa13.66□□□□□ -0.22
CLN3-224ENST00000566816 ZNF277Q9NRM2 450 aaPredicted RBP13.66□□□□□ -0.22
CLN3-224ENST00000566816 PPP4R2Q9NY27 417 aa13.66□□□□□ -0.22
CLN3-224ENST00000566816 FER1L6Q2WGJ9 1857 aa13.65□□□□□ -0.22
CLN3-224ENST00000566816 LTBP1Q14766 1721 aa13.65□□□□□ -0.22
CLN3-224ENST00000566816 WTIPA6NIX2 430 aaPredicted RBP13.65□□□□□ -0.22
CLN3-224ENST00000566816 FZD9O00144 591 aa13.65□□□□□ -0.22
CLN3-224ENST00000566816 IL1R1P14778 569 aa13.65□□□□□ -0.22
CLN3-224ENST00000566816 PRELPP51888 382 aa13.65□□□□□ -0.22
CLN3-224ENST00000566816 TIMM10P62072 90 aa13.65□□□□□ -0.22
CLN3-224ENST00000566816 ZNF804AQ7Z570 1209 aa13.65□□□□□ -0.22
CLN3-224ENST00000566816 EAF2Q96CJ1 260 aaPredicted RBP13.65□□□□□ -0.22
CLN3-224ENST00000566816 ZNRF3Q9ULT6 936 aa13.65□□□□□ -0.22
CLN3-224ENST00000566816 DUOX1Q9NRD9 1551 aa13.64□□□□□ -0.23
CLN3-224ENST00000566816 SNAP23O00161 211 aa13.64□□□□□ -0.23
CLN3-224ENST00000566816 SEMA3EO15041 775 aa13.64□□□□□ -0.23
CLN3-224ENST00000566816 IGSF3O75054 1194 aa13.64□□□□□ -0.23
CLN3-224ENST00000566816 RASSF7Q02833 373 aa13.64□□□□□ -0.23
CLN3-224ENST00000566816 AOC3Q16853 763 aa13.64□□□□□ -0.23
CLN3-224ENST00000566816 CENPQQ7L2Z9 268 aaPredicted RBP13.64□□□□□ -0.23
CLN3-224ENST00000566816 TXNRD3Q86VQ6 643 aa13.64□□□□□ -0.23
CLN3-224ENST00000566816 NIM1KQ8IY84 436 aa13.64□□□□□ -0.23
CLN3-224ENST00000566816 TDRD7Q8NHU6 1098 aaKnown RBP13.64□□□□□ -0.23
CLN3-224ENST00000566816 XAGE2Q96GT9 111 aa13.64□□□□□ -0.23
CLN3-224ENST00000566816 CD209Q9NNX6 404 aa13.64□□□□□ -0.23
CLN3-224ENST00000566816 GNL3LQ9NVN8 582 aaKnown RBP13.64□□□□□ -0.23
CLN3-224ENST00000566816 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.64□□□□□ -0.23
CLN3-224ENST00000566816 RIMBP2O15034 1052 aa13.63□□□□□ -0.23
CLN3-224ENST00000566816 MMP14P50281 582 aa13.63□□□□□ -0.23
CLN3-224ENST00000566816 NUCB1Q02818 461 aa13.63□□□□□ -0.23
CLN3-224ENST00000566816 CCDC158Q5M9N0 1113 aa13.63□□□□□ -0.23
CLN3-224ENST00000566816 C9orf131Q5VYM1 1079 aa13.63□□□□□ -0.23
CLN3-224ENST00000566816 NEUROD6Q96NK8 337 aa13.63□□□□□ -0.23
CLN3-224ENST00000566816 ZBTB47Q9UFB7 747 aaPredicted RBP13.63□□□□□ -0.23
CLN3-224ENST00000566816 PDS5AQ29RF7 1337 aaKnown RBP13.63□□□□□ -0.23
CLN3-224ENST00000566816 KDM2BQ8NHM5 1336 aa13.63□□□□□ -0.23
CLN3-224ENST00000566816 G3V3G9 751 aa13.62□□□□□ -0.23
CLN3-224ENST00000566816 IFIT2P09913 472 aaKnown RBP13.62□□□□□ -0.23
CLN3-224ENST00000566816 UQCRFS1P1P0C7P4 283 aa13.62□□□□□ -0.23
CLN3-224ENST00000566816 BCAMP50895 628 aa13.62□□□□□ -0.23
CLN3-224ENST00000566816 FKBP1AP62942 108 aaKnown RBP13.62□□□□□ -0.23
CLN3-224ENST00000566816 DCAF8Q5TAQ9 597 aa13.62□□□□□ -0.23
CLN3-224ENST00000566816 ANKRD45Q5TZF3 282 aa13.62□□□□□ -0.23
CLN3-224ENST00000566816 STRIP1Q5VSL9 837 aa13.62□□□□□ -0.23
CLN3-224ENST00000566816 CCDC102BQ68D86 513 aa13.62□□□□□ -0.23
CLN3-224ENST00000566816 AACSQ86V21 672 aa13.62□□□□□ -0.23
CLN3-224ENST00000566816 VPS37DQ86XT2 251 aa13.62□□□□□ -0.23
CLN3-224ENST00000566816 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.62□□□□□ -0.23
CLN3-224ENST00000566816 CCDC136Q96JN2 1154 aa13.62□□□□□ -0.23
CLN3-224ENST00000566816 IL1RAPL2Q9NP60 686 aa13.62□□□□□ -0.23
CLN3-224ENST00000566816 RNF181Q9P0P0 153 aa13.62□□□□□ -0.23
CLN3-224ENST00000566816 FAM205AQ6ZU69 1335 aa13.62□□□□□ -0.23
CLN3-224ENST00000566816 ECE2O60344 883 aa13.61□□□□□ -0.23
CLN3-224ENST00000566816 KLRK1P26718 216 aa13.61□□□□□ -0.23
CLN3-224ENST00000566816 GYG1P46976 350 aa13.61□□□□□ -0.23
CLN3-224ENST00000566816 EIF6P56537 245 aaKnown RBP13.61□□□□□ -0.23
CLN3-224ENST00000566816 TNIP1Q15025 636 aa13.61□□□□□ -0.23
CLN3-224ENST00000566816 GORABQ5T7V8 394 aa13.61□□□□□ -0.23
CLN3-224ENST00000566816 CHD1LQ86WJ1 897 aa13.61□□□□□ -0.23
CLN3-224ENST00000566816 DBNLQ9UJU6 430 aaKnown RBP13.61□□□□□ -0.23
CLN3-224ENST00000566816 ZNF609O15014 1411 aa13.61□□□□□ -0.23
CLN3-224ENST00000566816 VIL1P09327 827 aaKnown RBP13.6□□□□□ -0.23
CLN3-224ENST00000566816 ARID4AP29374 1257 aaPredicted RBP13.6□□□□□ -0.23
CLN3-224ENST00000566816 ADORA1P30542 326 aa13.6□□□□□ -0.23
CLN3-224ENST00000566816 DOK7Q18PE1 504 aa13.6□□□□□ -0.23
CLN3-224ENST00000566816 DPY19L2Q6NUT2 758 aa13.6□□□□□ -0.23
CLN3-224ENST00000566816 GPR101Q96P66 508 aaPredicted RBP13.6□□□□□ -0.23
CLN3-224ENST00000566816 DBNDD2Q9BQY9 259 aa13.6□□□□□ -0.23
CLN3-224ENST00000566816 CCDC8Q9H0W5 538 aaPredicted RBP13.6□□□□□ -0.23
CLN3-224ENST00000566816 DENND2AQ9ULE3 1009 aa13.6□□□□□ -0.23
CLN3-224ENST00000566816 SUGT1Q9Y2Z0 365 aa13.6□□□□□ -0.23
CLN3-224ENST00000566816 USP17L3A6NCW0 530 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 USP17L4A6NCW7 530 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 YDJCA8MPS7 323 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 APBB1O00213 710 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 ATP5JP18859 108 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 CXCL9Q07325 125 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 TTLL5Q6EMB2 1281 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 CIAPIN1Q6FI81 312 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 USP17L1Q7RTZ2 530 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 GPC2Q8N158 579 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 WDR66Q8TBY9 1149 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 TBC1D22AQ8WUA7 517 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 DBNDD1Q9H9R9 158 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 STAP2Q9UGK3 403 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 TTC41PQ6P2S7 1318 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 CACNA1SQ13698 1873 aa13.59□□□□□ -0.23
CLN3-224ENST00000566816 SMARCA5O60264 1052 aaPredicted RBP13.58□□□□□ -0.24
CLN3-224ENST00000566816 RPS12P25398 132 aaKnown RBP13.58□□□□□ -0.24
CLN3-224ENST00000566816 PHKA1P46020 1223 aa13.58□□□□□ -0.24
CLN3-224ENST00000566816 TMED8Q6PL24 325 aaPredicted RBP13.58□□□□□ -0.24
CLN3-224ENST00000566816 AGBL3Q8NEM8 1001 aa13.58□□□□□ -0.24
CLN3-224ENST00000566816 DPF2Q92785 391 aa13.58□□□□□ -0.24
CLN3-224ENST00000566816 GPATCH3Q96I76 525 aa13.58□□□□□ -0.24
CLN3-224ENST00000566816 OSBPL3Q9H4L5 887 aa13.58□□□□□ -0.24
CLN3-224ENST00000566816 ECHDC1Q9NTX5 307 aa13.58□□□□□ -0.24
CLN3-224ENST00000566816 MYO3BQ8WXR4 1341 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms