RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 CSF1RP07333 972 aa23.86■■□□□ 1.41
CLN3-218ENST00000565688 ITGA6P23229 1130 aa23.86■■□□□ 1.41
CLN3-218ENST00000565688 NOGQ13253 232 aa23.86■■□□□ 1.41
CLN3-218ENST00000565688 MPHOSPH8Q99549 860 aa23.86■■□□□ 1.41
CLN3-218ENST00000565688 ANKRD2Q9GZV1 360 aa23.86■■□□□ 1.41
CLN3-218ENST00000565688 GBA2Q9HCG7 927 aaPredicted RBP23.86■■□□□ 1.41
CLN3-218ENST00000565688 DLK2Q6UY11 383 aa23.85■■□□□ 1.41
CLN3-218ENST00000565688 SPEF2Q9C093 1822 aa23.84■■□□□ 1.41
CLN3-218ENST00000565688 WTIPA6NIX2 430 aaPredicted RBP23.84■■□□□ 1.41
CLN3-218ENST00000565688 SCARF1Q14162 830 aa23.84■■□□□ 1.41
CLN3-218ENST00000565688 FAM161AQ3B820 660 aa23.84■■□□□ 1.41
CLN3-218ENST00000565688 COA1Q9GZY4 146 aa23.84■■□□□ 1.41
CLN3-218ENST00000565688 MYOZ2Q9NPC6 264 aa23.84■■□□□ 1.41
CLN3-218ENST00000565688 POLR2AP24928 1970 aaKnown RBP23.83■■□□□ 1.41
CLN3-218ENST00000565688 MYO3BQ8WXR4 1341 aa23.83■■□□□ 1.4
CLN3-218ENST00000565688 ANGEL2Q5VTE6 544 aaKnown RBP23.82■■□□□ 1.4
CLN3-218ENST00000565688 RGMBQ6NW40 437 aa23.82■■□□□ 1.4
CLN3-218ENST00000565688 FAM9BQ8IZU0 186 aa23.82■■□□□ 1.4
CLN3-218ENST00000565688 CCDC102AQ96A19 550 aa23.82■■□□□ 1.4
CLN3-218ENST00000565688 ZNF804BA4D1E1 1349 aa23.82■■□□□ 1.4
CLN3-218ENST00000565688 PITPNM2Q9BZ72 1349 aa23.82■■□□□ 1.4
CLN3-218ENST00000565688 ANKRD18BA2A2Z9 1011 aa23.81■■□□□ 1.4
CLN3-218ENST00000565688 MMP14P50281 582 aa23.81■■□□□ 1.4
CLN3-218ENST00000565688 DACT2Q5SW24 774 aa23.81■■□□□ 1.4
CLN3-218ENST00000565688 STRIP1Q5VSL9 837 aa23.81■■□□□ 1.4
CLN3-218ENST00000565688 OGFOD1Q8N543 542 aa23.81■■□□□ 1.4
CLN3-218ENST00000565688 SPINK5Q9NQ38 1064 aaPredicted RBP23.81■■□□□ 1.4
CLN3-218ENST00000565688 ASTN2O75129 1339 aaPredicted RBP23.81■■□□□ 1.4
CLN3-218ENST00000565688 BEND3Q5T5X7 828 aa23.8■■□□□ 1.4
CLN3-218ENST00000565688 CDCA5Q96FF9 252 aa23.8■■□□□ 1.4
CLN3-218ENST00000565688 F6X3S4 739 aa23.79■■□□□ 1.4
CLN3-218ENST00000565688 KCNJ4P48050 445 aa23.79■■□□□ 1.4
CLN3-218ENST00000565688 ZNF157P51786 506 aaPredicted RBP23.78■■□□□ 1.4
CLN3-218ENST00000565688 CHRNDQ07001 517 aa23.78■■□□□ 1.4
CLN3-218ENST00000565688 IFIT5Q13325 482 aaKnown RBP23.78■■□□□ 1.4
CLN3-218ENST00000565688 TXNRD3Q86VQ6 643 aa23.78■■□□□ 1.4
CLN3-218ENST00000565688 FBXW7Q969H0 707 aa23.78■■□□□ 1.4
CLN3-218ENST00000565688 TSKSQ9UJT2 592 aa23.78■■□□□ 1.4
CLN3-218ENST00000565688 FAM155AB1AL88 458 aaPredicted RBP23.77■■□□□ 1.4
CLN3-218ENST00000565688 FKBP1BP68106 108 aa23.77■■□□□ 1.4
CLN3-218ENST00000565688 FOXO4P98177 505 aa23.77■■□□□ 1.4
CLN3-218ENST00000565688 TTLL5Q6EMB2 1281 aa23.76■■□□□ 1.39
CLN3-218ENST00000565688 GRM8O00222 908 aa23.75■■□□□ 1.39
CLN3-218ENST00000565688 ABHD8Q96I13 439 aa23.75■■□□□ 1.39
CLN3-218ENST00000565688 ZIC5Q96T25 663 aa23.75■■□□□ 1.39
CLN3-218ENST00000565688 MXD3Q9BW11 206 aa23.75■■□□□ 1.39
CLN3-218ENST00000565688 CHMP3Q9Y3E7 222 aa23.75■■□□□ 1.39
CLN3-218ENST00000565688 ALDH1L1O75891 902 aa23.74■■□□□ 1.39
CLN3-218ENST00000565688 KLRK1P26718 216 aa23.74■■□□□ 1.39
CLN3-218ENST00000565688 NBPF9Q3BBW0 867 aa23.74■■□□□ 1.39
CLN3-218ENST00000565688 C9orf78Q9NZ63 289 aaPredicted RBP23.74■■□□□ 1.39
CLN3-218ENST00000565688 HDAC9Q9UKV0 1011 aa23.74■■□□□ 1.39
CLN3-218ENST00000565688 SLC10A3P09131 477 aa23.73■■□□□ 1.39
CLN3-218ENST00000565688 CCDC57Q2TAC2 916 aa23.73■■□□□ 1.39
CLN3-218ENST00000565688 LMBR1LQ6UX01 489 aa23.73■■□□□ 1.39
CLN3-218ENST00000565688 C15orf52Q6ZUT6 534 aaKnown RBP23.73■■□□□ 1.39
CLN3-218ENST00000565688 ZNF646O15015 1829 aaPredicted RBP23.73■■□□□ 1.39
CLN3-218ENST00000565688 WNT10BO00744 389 aa23.72■■□□□ 1.39
CLN3-218ENST00000565688 GTF2IP78347 998 aa23.72■■□□□ 1.39
CLN3-218ENST00000565688 KIF23Q02241 960 aaPredicted RBP23.72■■□□□ 1.39
CLN3-218ENST00000565688 CD209Q9NNX6 404 aa23.72■■□□□ 1.39
CLN3-218ENST00000565688 SAGE1Q9NXZ1 904 aa23.72■■□□□ 1.39
CLN3-218ENST00000565688 PAPPA2Q9BXP8 1791 aa23.71■■□□□ 1.39
CLN3-218ENST00000565688 ZNF521Q96K83 1311 aa23.71■■□□□ 1.39
CLN3-218ENST00000565688 TAF7LQ5H9L4 462 aa23.71■■□□□ 1.39
CLN3-218ENST00000565688 REM2Q8IYK8 340 aaPredicted RBP23.71■■□□□ 1.39
CLN3-218ENST00000565688 SRCIN1Q9C0H9 1055 aa23.71■■□□□ 1.39
CLN3-218ENST00000565688 TAF5LO75529 589 aa23.7■■□□□ 1.38
CLN3-218ENST00000565688 SLC4A10Q6U841 1118 aa23.7■■□□□ 1.38
CLN3-218ENST00000565688 ZNF804AQ7Z570 1209 aa23.7■■□□□ 1.38
CLN3-218ENST00000565688 KIAA0825Q8IV33 1275 aa23.7■■□□□ 1.38
CLN3-218ENST00000565688 HELBQ8NG08 1087 aaPredicted RBP23.7■■□□□ 1.38
CLN3-218ENST00000565688 IRS2Q9Y4H2 1338 aa23.69■■□□□ 1.38
CLN3-218ENST00000565688 NF2P35240 595 aa23.69■■□□□ 1.38
CLN3-218ENST00000565688 EPHA10Q5JZY3 1008 aa23.69■■□□□ 1.38
CLN3-218ENST00000565688 LDHAL6AQ6ZMR3 332 aa23.69■■□□□ 1.38
CLN3-218ENST00000565688 APOBEC3FQ8IUX4 373 aaKnown RBP23.68■■□□□ 1.38
CLN3-218ENST00000565688 CNNM1Q9NRU3 951 aa23.68■■□□□ 1.38
CLN3-218ENST00000565688 SNAP23O00161 211 aa23.67■■□□□ 1.38
CLN3-218ENST00000565688 SASH1O94885 1247 aa23.67■■□□□ 1.38
CLN3-218ENST00000565688 IL1R1P14778 569 aa23.67■■□□□ 1.38
CLN3-218ENST00000565688 RASAL3Q86YV0 1011 aa23.67■■□□□ 1.38
CLN3-218ENST00000565688 SCAF8Q9UPN6 1271 aaKnown RBP23.67■■□□□ 1.38
CLN3-218ENST00000565688 ZBED3Q96IU2 234 aaPredicted RBP23.66■■□□□ 1.38
CLN3-218ENST00000565688 CSRNP1Q96S65 589 aa23.66■■□□□ 1.38
CLN3-218ENST00000565688 FKBP1AP62942 108 aaKnown RBP23.65■■□□□ 1.38
CLN3-218ENST00000565688 TTLL12Q14166 644 aaPredicted RBP23.65■■□□□ 1.38
CLN3-218ENST00000565688 PRAMEF18Q5VWM3 479 aa23.65■■□□□ 1.38
CLN3-218ENST00000565688 ZNF594Q96JF6 807 aaPredicted RBP23.65■■□□□ 1.38
CLN3-218ENST00000565688 RNF186Q9NXI6 227 aa23.65■■□□□ 1.38
CLN3-218ENST00000565688 A0A1B0GUL6 1792 aa23.65■■□□□ 1.38
CLN3-218ENST00000565688 CASP8AP2Q9UKL3 1982 aa23.64■■□□□ 1.38
CLN3-218ENST00000565688 E9PSI1 815 aa23.64■■□□□ 1.37
CLN3-218ENST00000565688 DLGAP5Q15398 846 aa23.64■■□□□ 1.37
CLN3-218ENST00000565688 MTMR14Q8NCE2 650 aa23.64■■□□□ 1.37
CLN3-218ENST00000565688 UTYO14607 1347 aa23.63■■□□□ 1.37
CLN3-218ENST00000565688 UBE2Q2LH0YL09 131 aa23.63■■□□□ 1.37
CLN3-218ENST00000565688 PLIN1O60240 522 aa23.63■■□□□ 1.37
CLN3-218ENST00000565688 TRPA1O75762 1119 aa23.63■■□□□ 1.37
CLN3-218ENST00000565688 MOB2Q70IA6 237 aa23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms