RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 FAM155AB1AL88 458 aaPredicted RBP21.64■■□□□ 1.05
CLN3-217ENST00000565354 NBPF7P0C2Y1 421 aaPredicted RBP21.64■■□□□ 1.05
CLN3-217ENST00000565354 MS4A1P11836 297 aa21.64■■□□□ 1.05
CLN3-217ENST00000565354 INTS3Q68E01 1043 aaKnown RBP21.64■■□□□ 1.05
CLN3-217ENST00000565354 RGMBQ6NW40 437 aa21.64■■□□□ 1.05
CLN3-217ENST00000565354 SAMD7Q7Z3H4 446 aa21.64■■□□□ 1.05
CLN3-217ENST00000565354 TTLL11Q8NHH1 800 aa21.64■■□□□ 1.05
CLN3-217ENST00000565354 SAGE1Q9NXZ1 904 aa21.64■■□□□ 1.05
CLN3-217ENST00000565354 ZBTB12Q9Y330 459 aaPredicted RBP21.64■■□□□ 1.05
CLN3-217ENST00000565354 KRT26Q7Z3Y9 468 aa21.63■■□□□ 1.05
CLN3-217ENST00000565354 SUCLG2Q96I99 432 aa21.63■■□□□ 1.05
CLN3-217ENST00000565354 CDC5LQ99459 802 aaKnown RBP21.63■■□□□ 1.05
CLN3-217ENST00000565354 GBA2Q9HCG7 927 aaPredicted RBP21.63■■□□□ 1.05
CLN3-217ENST00000565354 SEC31BQ9NQW1 1179 aa21.63■■□□□ 1.05
CLN3-217ENST00000565354 HDAC5Q9UQL6 1122 aa21.63■■□□□ 1.05
CLN3-217ENST00000565354 UTYO14607 1347 aa21.62■■□□□ 1.05
CLN3-217ENST00000565354 PSMD14O00487 310 aa21.62■■□□□ 1.05
CLN3-217ENST00000565354 UBTFL1P0CB47 393 aaPredicted RBP21.62■■□□□ 1.05
CLN3-217ENST00000565354 ANKRD18AQ8IVF6 992 aa21.62■■□□□ 1.05
CLN3-217ENST00000565354 CELF1Q92879 486 aaKnown RBP21.62■■□□□ 1.05
CLN3-217ENST00000565354 USP44Q9H0E7 712 aa21.62■■□□□ 1.05
CLN3-217ENST00000565354 GREM2Q9H772 168 aa21.62■■□□□ 1.05
CLN3-217ENST00000565354 RPS8P62241 208 aaKnown RBP21.61■■□□□ 1.05
CLN3-217ENST00000565354 WASHC4Q2M389 1173 aa21.61■■□□□ 1.05
CLN3-217ENST00000565354 TBC1D10BQ4KMP7 808 aaPredicted RBP21.61■■□□□ 1.05
CLN3-217ENST00000565354 LMBR1LQ6UX01 489 aa21.61■■□□□ 1.05
CLN3-217ENST00000565354 TMEM57Q8N5G2 664 aa21.61■■□□□ 1.05
CLN3-217ENST00000565354 C2orf69Q8N8R5 385 aa21.61■■□□□ 1.05
CLN3-217ENST00000565354 CCDC102AQ96A19 550 aa21.61■■□□□ 1.05
CLN3-217ENST00000565354 ANKRD18BA2A2Z9 1011 aa21.6■■□□□ 1.05
CLN3-217ENST00000565354 EGFRP00533 1210 aa21.6■■□□□ 1.05
CLN3-217ENST00000565354 GNAI3P08754 354 aa21.6■■□□□ 1.05
CLN3-217ENST00000565354 ITGA6P23229 1130 aa21.6■■□□□ 1.05
CLN3-217ENST00000565354 FOXO4P98177 505 aa21.6■■□□□ 1.05
CLN3-217ENST00000565354 TAF7LQ5H9L4 462 aa21.6■■□□□ 1.05
CLN3-217ENST00000565354 ITPRIPQ8IWB1 547 aa21.6■■□□□ 1.05
CLN3-217ENST00000565354 DBNDD1Q9H9R9 158 aa21.6■■□□□ 1.05
CLN3-217ENST00000565354 RTL9Q8NET4 1388 aa21.6■■□□□ 1.05
CLN3-217ENST00000565354 ADM5C9JUS6 153 aa21.59■■□□□ 1.05
CLN3-217ENST00000565354 CSF1RP07333 972 aa21.59■■□□□ 1.05
CLN3-217ENST00000565354 RPS12P25398 132 aaKnown RBP21.59■■□□□ 1.05
CLN3-217ENST00000565354 IGHMBP2P38935 993 aaKnown RBP21.59■■□□□ 1.05
CLN3-217ENST00000565354 KIF23Q02241 960 aaPredicted RBP21.59■■□□□ 1.05
CLN3-217ENST00000565354 IFIT5Q13325 482 aaKnown RBP21.59■■□□□ 1.05
CLN3-217ENST00000565354 CCDC57Q2TAC2 916 aa21.59■■□□□ 1.05
CLN3-217ENST00000565354 DCPSQ96C86 337 aaKnown RBP21.59■■□□□ 1.05
CLN3-217ENST00000565354 PLIN1O60240 522 aa21.58■■□□□ 1.05
CLN3-217ENST00000565354 ZNF157P51786 506 aaPredicted RBP21.58■■□□□ 1.05
CLN3-217ENST00000565354 EPHA10Q5JZY3 1008 aa21.58■■□□□ 1.05
CLN3-217ENST00000565354 MEIS3Q99687 375 aa21.58■■□□□ 1.05
CLN3-217ENST00000565354 BICC1Q9H694 974 aaKnown RBP21.58■■□□□ 1.05
CLN3-217ENST00000565354 RNF186Q9NXI6 227 aa21.58■■□□□ 1.05
CLN3-217ENST00000565354 NSFL1CQ9UNZ2 370 aaKnown RBP21.58■■□□□ 1.05
CLN3-217ENST00000565354 TRPA1O75762 1119 aa21.57■■□□□ 1.04
CLN3-217ENST00000565354 MPHOSPH8Q99549 860 aa21.57■■□□□ 1.04
CLN3-217ENST00000565354 POLLQ9UGP5 575 aa21.57■■□□□ 1.04
CLN3-217ENST00000565354 SCN9AQ15858 1988 aa21.57■■□□□ 1.04
CLN3-217ENST00000565354 C6orf229H3BNL8 230 aa21.56■■□□□ 1.04
CLN3-217ENST00000565354 RIMBP2O15034 1052 aa21.56■■□□□ 1.04
CLN3-217ENST00000565354 SOX10P56693 466 aa21.56■■□□□ 1.04
CLN3-217ENST00000565354 RBM26Q5T8P6 1007 aaKnown RBP21.56■■□□□ 1.04
CLN3-217ENST00000565354 PANK1Q8TE04 598 aa21.56■■□□□ 1.04
CLN3-217ENST00000565354 ECE2O60344 883 aa21.55■■□□□ 1.04
CLN3-217ENST00000565354 SLC10A3P09131 477 aa21.55■■□□□ 1.04
CLN3-217ENST00000565354 RLBP1P12271 317 aa21.55■■□□□ 1.04
CLN3-217ENST00000565354 KAZALD1Q96I82 304 aa21.55■■□□□ 1.04
CLN3-217ENST00000565354 KCNQ5Q9NR82 932 aa21.55■■□□□ 1.04
CLN3-217ENST00000565354 LRRFIP2Q9Y608 721 aaKnown RBP21.55■■□□□ 1.04
CLN3-217ENST00000565354 SPEF2Q9C093 1822 aa21.55■■□□□ 1.04
CLN3-217ENST00000565354 COL4A1P02462 1669 aa21.54■■□□□ 1.04
CLN3-217ENST00000565354 GPSM2P81274 684 aa21.54■■□□□ 1.04
CLN3-217ENST00000565354 DOK7Q18PE1 504 aa21.54■■□□□ 1.04
CLN3-217ENST00000565354 KIF4BQ2VIQ3 1234 aa21.54■■□□□ 1.04
CLN3-217ENST00000565354 CSRNP1Q96S65 589 aa21.54■■□□□ 1.04
CLN3-217ENST00000565354 EYA3Q99504 573 aa21.54■■□□□ 1.04
CLN3-217ENST00000565354 SULF1Q8IWU6 871 aa21.53■■□□□ 1.04
CLN3-217ENST00000565354 BSDC1Q9NW68 430 aaPredicted RBP21.53■■□□□ 1.04
CLN3-217ENST00000565354 ANKIB1Q9P2G1 1089 aa21.53■■□□□ 1.04
CLN3-217ENST00000565354 GNAI2P04899 355 aa21.52■■□□□ 1.04
CLN3-217ENST00000565354 RABL6Q3YEC7 729 aaPredicted RBP21.52■■□□□ 1.04
CLN3-217ENST00000565354 CTU1Q7Z7A3 348 aaKnown RBP21.52■■□□□ 1.04
CLN3-217ENST00000565354 ANKRD44Q8N8A2 993 aa21.52■■□□□ 1.04
CLN3-217ENST00000565354 GGA3Q9NZ52 723 aa21.52■■□□□ 1.04
CLN3-217ENST00000565354 VIL1P09327 827 aaKnown RBP21.51■■□□□ 1.03
CLN3-217ENST00000565354 TBC1D16Q8TBP0 767 aa21.51■■□□□ 1.03
CLN3-217ENST00000565354 CNNM1Q9NRU3 951 aa21.51■■□□□ 1.03
CLN3-217ENST00000565354 MVPQ14764 893 aaKnown RBP21.5■■□□□ 1.03
CLN3-217ENST00000565354 LDHAL6AQ6ZMR3 332 aa21.5■■□□□ 1.03
CLN3-217ENST00000565354 REM2Q8IYK8 340 aaPredicted RBP21.5■■□□□ 1.03
CLN3-217ENST00000565354 CDCA5Q96FF9 252 aa21.5■■□□□ 1.03
CLN3-217ENST00000565354 ZNF594Q96JF6 807 aaPredicted RBP21.5■■□□□ 1.03
CLN3-217ENST00000565354 CHMP4BQ9H444 224 aaKnown RBP21.5■■□□□ 1.03
CLN3-217ENST00000565354 COG6Q9Y2V7 657 aa21.5■■□□□ 1.03
CLN3-217ENST00000565354 ASTN2O75129 1339 aaPredicted RBP21.5■■□□□ 1.03
CLN3-217ENST00000565354 PSME4Q14997 1843 aa21.5■■□□□ 1.03
CLN3-217ENST00000565354 RRP1P56182 461 aaKnown RBP21.49■■□□□ 1.03
CLN3-217ENST00000565354 PDE3AQ14432 1141 aa21.49■■□□□ 1.03
CLN3-217ENST00000565354 GGA1Q9UJY5 639 aa21.49■■□□□ 1.03
CLN3-217ENST00000565354 DDX19BQ9UMR2 479 aa21.49■■□□□ 1.03
CLN3-217ENST00000565354 PRPF38BQ5VTL8 546 aaKnown RBP21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 452.1 ms