RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 ANKRD2Q9GZV1 360 aa12.17□□□□□ -0.46
CLK3-208ENST00000562626 DBNDD1Q9H9R9 158 aa12.17□□□□□ -0.46
CLK3-208ENST00000562626 NOP58Q9Y2X3 529 aaKnown RBP12.17□□□□□ -0.46
CLK3-208ENST00000562626 COL1A1P02452 1464 aaPredicted RBP12.16□□□□□ -0.46
CLK3-208ENST00000562626 AK9Q5TCS8 1911 aa12.16□□□□□ -0.46
CLK3-208ENST00000562626 MYH2Q9UKX2 1941 aa12.16□□□□□ -0.46
CLK3-208ENST00000562626 SURF6O75683 361 aaKnown RBP12.16□□□□□ -0.46
CLK3-208ENST00000562626 ADORA1P30542 326 aa12.16□□□□□ -0.46
CLK3-208ENST00000562626 IL15P40933 162 aaPredicted RBP12.16□□□□□ -0.46
CLK3-208ENST00000562626 WASHC4Q2M389 1173 aa12.16□□□□□ -0.46
CLK3-208ENST00000562626 GRIPAP1Q4V328 841 aa12.16□□□□□ -0.46
CLK3-208ENST00000562626 LARGE2Q8N3Y3 721 aa12.16□□□□□ -0.46
CLK3-208ENST00000562626 LEMD3Q9Y2U8 911 aa12.16□□□□□ -0.46
CLK3-208ENST00000562626 CDK5RAP2Q96SN8 1893 aa12.16□□□□□ -0.46
CLK3-208ENST00000562626 FZD9O00144 591 aa12.15□□□□□ -0.46
CLK3-208ENST00000562626 GYG1P46976 350 aa12.15□□□□□ -0.46
CLK3-208ENST00000562626 SUPT20HQ8NEM7 779 aa12.15□□□□□ -0.46
CLK3-208ENST00000562626 TMX4Q9H1E5 349 aaPredicted RBP12.15□□□□□ -0.46
CLK3-208ENST00000562626 FBXO3Q9UK99 471 aa12.15□□□□□ -0.46
CLK3-208ENST00000562626 APBB1O00213 710 aa12.14□□□□□ -0.47
CLK3-208ENST00000562626 ECE2O60344 883 aa12.14□□□□□ -0.47
CLK3-208ENST00000562626 TIMM10P62072 90 aa12.14□□□□□ -0.47
CLK3-208ENST00000562626 UBE4AQ14139 1066 aa12.14□□□□□ -0.47
CLK3-208ENST00000562626 C15orf52Q6ZUT6 534 aaKnown RBP12.14□□□□□ -0.47
CLK3-208ENST00000562626 FAM84BQ96KN1 310 aaPredicted RBP12.14□□□□□ -0.47
CLK3-208ENST00000562626 CHMP4BQ9H444 224 aaKnown RBP12.14□□□□□ -0.47
CLK3-208ENST00000562626 MAST2Q6P0Q8 1798 aa12.13□□□□□ -0.47
CLK3-208ENST00000562626 RAD17O75943 681 aa12.13□□□□□ -0.47
CLK3-208ENST00000562626 IGHDP01880 384 aa12.13□□□□□ -0.47
CLK3-208ENST00000562626 KCNJ4P48050 445 aa12.13□□□□□ -0.47
CLK3-208ENST00000562626 CXCL9Q07325 125 aa12.13□□□□□ -0.47
CLK3-208ENST00000562626 G3BP1Q13283 466 aaKnown RBP eCLIP12.13□□□□□ -0.47
CLK3-208ENST00000562626 PUM3Q15397 648 aaKnown RBP12.13□□□□□ -0.47
CLK3-208ENST00000562626 ATP2B3Q16720 1220 aa12.13□□□□□ -0.47
CLK3-208ENST00000562626 NIM1KQ8IY84 436 aa12.13□□□□□ -0.47
CLK3-208ENST00000562626 EYA3Q99504 573 aa12.13□□□□□ -0.47
CLK3-208ENST00000562626 MXD3Q9BW11 206 aa12.13□□□□□ -0.47
CLK3-208ENST00000562626 ZC3H12CQ9C0D7 883 aaKnown RBP12.13□□□□□ -0.47
CLK3-208ENST00000562626 TLR7Q9NYK1 1049 aaKnown RBP12.13□□□□□ -0.47
CLK3-208ENST00000562626 CEP126Q9P2H0 1117 aa12.13□□□□□ -0.47
CLK3-208ENST00000562626 IQSEC3Q9UPP2 1182 aaPredicted RBP12.13□□□□□ -0.47
CLK3-208ENST00000562626 A0A1B0GUL7 405 aa12.12□□□□□ -0.47
CLK3-208ENST00000562626 SHTN1A0MZ66 631 aa12.12□□□□□ -0.47
CLK3-208ENST00000562626 SMARCA5O60264 1052 aaPredicted RBP12.12□□□□□ -0.47
CLK3-208ENST00000562626 DDNO94850 711 aaPredicted RBP12.12□□□□□ -0.47
CLK3-208ENST00000562626 CENPBP07199 599 aaPredicted RBP12.12□□□□□ -0.47
CLK3-208ENST00000562626 BCAMP50895 628 aa12.12□□□□□ -0.47
CLK3-208ENST00000562626 ZNF526Q8TF50 670 aaPredicted RBP12.12□□□□□ -0.47
CLK3-208ENST00000562626 EAF2Q96CJ1 260 aaPredicted RBP12.12□□□□□ -0.47
CLK3-208ENST00000562626 VPS33BQ9H267 617 aa12.12□□□□□ -0.47
CLK3-208ENST00000562626 DCTPP1Q9H773 170 aa12.12□□□□□ -0.47
CLK3-208ENST00000562626 CD209Q9NNX6 404 aa12.12□□□□□ -0.47
CLK3-208ENST00000562626 IL1RAPL2Q9NP60 686 aa12.12□□□□□ -0.47
CLK3-208ENST00000562626 ZNRF3Q9ULT6 936 aa12.12□□□□□ -0.47
CLK3-208ENST00000562626 JAG2Q9Y219 1238 aa12.12□□□□□ -0.47
CLK3-208ENST00000562626 POTECB2RU33 542 aa12.11□□□□□ -0.47
CLK3-208ENST00000562626 HMMRO75330 724 aa12.11□□□□□ -0.47
CLK3-208ENST00000562626 PHKA1P46020 1223 aa12.11□□□□□ -0.47
CLK3-208ENST00000562626 OS9Q13438 667 aaPredicted RBP12.11□□□□□ -0.47
CLK3-208ENST00000562626 TNNI3KQ59H18 835 aa12.11□□□□□ -0.47
CLK3-208ENST00000562626 FBXO33Q7Z6M2 555 aa12.11□□□□□ -0.47
CLK3-208ENST00000562626 RHPN1Q8TCX5 695 aa12.11□□□□□ -0.47
CLK3-208ENST00000562626 JDP2Q8WYK2 163 aa12.11□□□□□ -0.47
CLK3-208ENST00000562626 FPGT-TNNI3KV9GXZ4 949 aa12.11□□□□□ -0.47
CLK3-208ENST00000562626 PSMD14O00487 310 aa12.1□□□□□ -0.47
CLK3-208ENST00000562626 SLC5A1P13866 664 aa12.1□□□□□ -0.47
CLK3-208ENST00000562626 IL1R1P14778 569 aa12.1□□□□□ -0.47
CLK3-208ENST00000562626 LPIN2Q92539 896 aa12.1□□□□□ -0.47
CLK3-208ENST00000562626 XAGE2Q96GT9 111 aa12.1□□□□□ -0.47
CLK3-208ENST00000562626 DBNDD2Q9BQY9 259 aa12.1□□□□□ -0.47
CLK3-208ENST00000562626 CCDC8Q9H0W5 538 aaPredicted RBP12.1□□□□□ -0.47
CLK3-208ENST00000562626 DBNLQ9UJU6 430 aaKnown RBP12.1□□□□□ -0.47
CLK3-208ENST00000562626 ZBTB12Q9Y330 459 aaPredicted RBP12.1□□□□□ -0.47
CLK3-208ENST00000562626 ZC3H4Q9UPT8 1303 aaKnown RBP12.1□□□□□ -0.47
CLK3-208ENST00000562626 GLTPD2A6NH11 291 aa12.09□□□□□ -0.47
CLK3-208ENST00000562626 HIBADHP31937 336 aaKnown RBP12.09□□□□□ -0.47
CLK3-208ENST00000562626 HDAC1Q13547 482 aaPredicted RBP12.09□□□□□ -0.47
CLK3-208ENST00000562626 SCARF1Q14162 830 aa12.09□□□□□ -0.47
CLK3-208ENST00000562626 GRIK5Q16478 980 aa12.09□□□□□ -0.47
CLK3-208ENST00000562626 CERS5Q8N5B7 392 aa12.09□□□□□ -0.47
CLK3-208ENST00000562626 TDRD7Q8NHU6 1098 aaKnown RBP12.09□□□□□ -0.47
CLK3-208ENST00000562626 NEUROD6Q96NK8 337 aa12.09□□□□□ -0.47
CLK3-208ENST00000562626 COA1Q9GZY4 146 aa12.09□□□□□ -0.47
CLK3-208ENST00000562626 BCL11AQ9H165 835 aa12.09□□□□□ -0.47
CLK3-208ENST00000562626 NMRK2Q9NPI5 230 aa12.09□□□□□ -0.47
CLK3-208ENST00000562626 GJA3Q9Y6H8 435 aa12.09□□□□□ -0.47
CLK3-208ENST00000562626 FOCADQ5VW36 1801 aa12.09□□□□□ -0.47
CLK3-208ENST00000562626 IFIT1P09914 478 aaKnown RBP12.08□□□□□ -0.48
CLK3-208ENST00000562626 SCNN1DP51172 638 aa12.08□□□□□ -0.48
CLK3-208ENST00000562626 APLP1P51693 650 aa12.08□□□□□ -0.48
CLK3-208ENST00000562626 GTF2IP78347 998 aa12.08□□□□□ -0.48
CLK3-208ENST00000562626 DACT2Q5SW24 774 aa12.08□□□□□ -0.48
CLK3-208ENST00000562626 CCDC102BQ68D86 513 aa12.08□□□□□ -0.48
CLK3-208ENST00000562626 CIAPIN1Q6FI81 312 aa12.08□□□□□ -0.48
CLK3-208ENST00000562626 PI16Q6UXB8 463 aa12.08□□□□□ -0.48
CLK3-208ENST00000562626 ZNF804AQ7Z570 1209 aa12.08□□□□□ -0.48
CLK3-208ENST00000562626 PODNQ7Z5L7 613 aa12.08□□□□□ -0.48
CLK3-208ENST00000562626 OTUD7AQ8TE49 926 aaPredicted RBP12.08□□□□□ -0.48
CLK3-208ENST00000562626 GPBP1L1Q9HC44 474 aaPredicted RBP12.08□□□□□ -0.48
CLK3-208ENST00000562626 GPR108Q9NPR9 543 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms