RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 SCN4AP35499 1836 aa11.69□□□□□ -0.54
LDLR-211ENST00000560173 SCN9AQ15858 1988 aa11.68□□□□□ -0.54
LDLR-211ENST00000560173 EYA2O00167 538 aa11.68□□□□□ -0.54
LDLR-211ENST00000560173 ZBTB7BO15156 539 aaPredicted RBP11.68□□□□□ -0.54
LDLR-211ENST00000560173 GMPSP49915 693 aaPredicted RBP11.68□□□□□ -0.54
LDLR-211ENST00000560173 SCNN1DP51172 638 aa11.68□□□□□ -0.54
LDLR-211ENST00000560173 VGLL2Q8N8G2 317 aa11.68□□□□□ -0.54
LDLR-211ENST00000560173 TAF1DQ9H5J8 278 aaPredicted RBP11.68□□□□□ -0.54
LDLR-211ENST00000560173 KCNQ5Q9NR82 932 aa11.68□□□□□ -0.54
LDLR-211ENST00000560173 HACL1Q9UJ83 578 aa11.68□□□□□ -0.54
LDLR-211ENST00000560173 G3V3G9 751 aa11.67□□□□□ -0.54
LDLR-211ENST00000560173 PSMD14O00487 310 aa11.67□□□□□ -0.54
LDLR-211ENST00000560173 SRGAP3O43295 1099 aa11.67□□□□□ -0.54
LDLR-211ENST00000560173 CIAO1O76071 339 aa11.67□□□□□ -0.54
LDLR-211ENST00000560173 MVPQ14764 893 aaKnown RBP11.67□□□□□ -0.54
LDLR-211ENST00000560173 METTL24Q5JXM2 366 aa11.67□□□□□ -0.54
LDLR-211ENST00000560173 DCAF8Q5TAQ9 597 aa11.67□□□□□ -0.54
LDLR-211ENST00000560173 ATG9AQ7Z3C6 839 aa11.67□□□□□ -0.54
LDLR-211ENST00000560173 PODNQ7Z5L7 613 aa11.67□□□□□ -0.54
LDLR-211ENST00000560173 COA1Q9GZY4 146 aa11.67□□□□□ -0.54
LDLR-211ENST00000560173 COPRSQ9NQ92 184 aa11.67□□□□□ -0.54
LDLR-211ENST00000560173 FBXO3Q9UK99 471 aa11.67□□□□□ -0.54
LDLR-211ENST00000560173 PA2G4Q9UQ80 394 aaKnown RBP11.67□□□□□ -0.54
LDLR-211ENST00000560173 ZNF609O15014 1411 aa11.67□□□□□ -0.54
LDLR-211ENST00000560173 PNMA6EA0A0J9YXQ4 647 aa11.66□□□□□ -0.54
LDLR-211ENST00000560173 PDE8BO95263 885 aa11.66□□□□□ -0.54
LDLR-211ENST00000560173 VIL1P09327 827 aaKnown RBP11.66□□□□□ -0.54
LDLR-211ENST00000560173 LMOD1P29536 600 aaPredicted RBP11.66□□□□□ -0.54
LDLR-211ENST00000560173 EPHX2P34913 555 aa11.66□□□□□ -0.54
LDLR-211ENST00000560173 EPS15P42566 896 aa11.66□□□□□ -0.54
LDLR-211ENST00000560173 UBE4AQ14139 1066 aa11.66□□□□□ -0.54
LDLR-211ENST00000560173 PDE3AQ14432 1141 aa11.66□□□□□ -0.54
LDLR-211ENST00000560173 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.66□□□□□ -0.54
LDLR-211ENST00000560173 SIL1Q9H173 461 aa11.66□□□□□ -0.54
LDLR-211ENST00000560173 C1orf115Q9H7X2 142 aa11.66□□□□□ -0.54
LDLR-211ENST00000560173 GPRC5DQ9NZD1 345 aa11.66□□□□□ -0.54
LDLR-211ENST00000560173 COG6Q9Y2V7 657 aa11.66□□□□□ -0.54
LDLR-211ENST00000560173 PSME4Q14997 1843 aa11.65□□□□□ -0.54
LDLR-211ENST00000560173 POTEIP0CG38 1075 aa11.65□□□□□ -0.54
LDLR-211ENST00000560173 POTEJP0CG39 1038 aa11.65□□□□□ -0.54
LDLR-211ENST00000560173 RPS12P25398 132 aaKnown RBP11.65□□□□□ -0.54
LDLR-211ENST00000560173 C20orf194Q5TEA3 1177 aa11.65□□□□□ -0.54
LDLR-211ENST00000560173 ZBTB12Q9Y330 459 aaPredicted RBP11.65□□□□□ -0.54
LDLR-211ENST00000560173 ADAMTSL1Q8N6G6 1762 aa11.64□□□□□ -0.55
LDLR-211ENST00000560173 USP17L3A6NCW0 530 aa11.64□□□□□ -0.55
LDLR-211ENST00000560173 USP17L4A6NCW7 530 aa11.64□□□□□ -0.55
LDLR-211ENST00000560173 FGFR2P21802 821 aa11.64□□□□□ -0.55
LDLR-211ENST00000560173 IL15P40933 162 aaPredicted RBP11.64□□□□□ -0.55
LDLR-211ENST00000560173 ATP8B2P98198 1209 aa11.64□□□□□ -0.55
LDLR-211ENST00000560173 POLA2Q14181 598 aa11.64□□□□□ -0.55
LDLR-211ENST00000560173 PUM3Q15397 648 aaKnown RBP11.64□□□□□ -0.55
LDLR-211ENST00000560173 DACT2Q5SW24 774 aa11.64□□□□□ -0.55
LDLR-211ENST00000560173 RSBN1LQ6PCB5 846 aaPredicted RBP11.64□□□□□ -0.55
LDLR-211ENST00000560173 USP17L1Q7RTZ2 530 aa11.64□□□□□ -0.55
LDLR-211ENST00000560173 ZNF804AQ7Z570 1209 aa11.64□□□□□ -0.55
LDLR-211ENST00000560173 PNMA8AQ86V59 439 aaPredicted RBP11.64□□□□□ -0.55
LDLR-211ENST00000560173 DPF2Q92785 391 aa11.64□□□□□ -0.55
LDLR-211ENST00000560173 CD209Q9NNX6 404 aa11.64□□□□□ -0.55
LDLR-211ENST00000560173 DDX19BQ9UMR2 479 aa11.64□□□□□ -0.55
LDLR-211ENST00000560173 ZNF646O15015 1829 aaPredicted RBP11.64□□□□□ -0.55
LDLR-211ENST00000560173 SHTN1A0MZ66 631 aa11.63□□□□□ -0.55
LDLR-211ENST00000560173 IL1R1P14778 569 aa11.63□□□□□ -0.55
LDLR-211ENST00000560173 GYG1P46976 350 aa11.63□□□□□ -0.55
LDLR-211ENST00000560173 RRP1P56182 461 aaKnown RBP11.63□□□□□ -0.55
LDLR-211ENST00000560173 EAPPQ56P03 285 aaPredicted RBP11.63□□□□□ -0.55
LDLR-211ENST00000560173 STRIP1Q5VSL9 837 aa11.63□□□□□ -0.55
LDLR-211ENST00000560173 CEP85Q6P2H3 762 aa11.63□□□□□ -0.55
LDLR-211ENST00000560173 LDHDQ86WU2 507 aa11.63□□□□□ -0.55
LDLR-211ENST00000560173 MICALL2Q8IY33 904 aa11.63□□□□□ -0.55
LDLR-211ENST00000560173 AGBL3Q8NEM8 1001 aa11.63□□□□□ -0.55
LDLR-211ENST00000560173 SSH3Q8TE77 659 aa11.63□□□□□ -0.55
LDLR-211ENST00000560173 FAM84BQ96KN1 310 aaPredicted RBP11.63□□□□□ -0.55
LDLR-211ENST00000560173 GMLQ99445 158 aa11.63□□□□□ -0.55
LDLR-211ENST00000560173 ADARB2Q9NS39 739 aaKnown RBP11.63□□□□□ -0.55
LDLR-211ENST00000560173 ZBTB40Q9NUA8 1239 aa11.63□□□□□ -0.55
LDLR-211ENST00000560173 PCDH10Q9P2E7 1040 aa11.63□□□□□ -0.55
LDLR-211ENST00000560173 CEP126Q9P2H0 1117 aa11.63□□□□□ -0.55
LDLR-211ENST00000560173 CNOT7Q9UIV1 285 aaKnown RBP11.63□□□□□ -0.55
LDLR-211ENST00000560173 H7C1D1 291 aa11.62□□□□□ -0.55
LDLR-211ENST00000560173 FOXN1O15353 648 aa11.62□□□□□ -0.55
LDLR-211ENST00000560173 HIBADHP31937 336 aaKnown RBP11.62□□□□□ -0.55
LDLR-211ENST00000560173 ATP2B3Q16720 1220 aa11.62□□□□□ -0.55
LDLR-211ENST00000560173 CHADLQ6NUI6 762 aa11.62□□□□□ -0.55
LDLR-211ENST00000560173 USP50Q70EL3 339 aaPredicted RBP11.62□□□□□ -0.55
LDLR-211ENST00000560173 FBXO33Q7Z6M2 555 aa11.62□□□□□ -0.55
LDLR-211ENST00000560173 TRPM4Q8TD43 1214 aa11.62□□□□□ -0.55
LDLR-211ENST00000560173 LPIN2Q92539 896 aa11.62□□□□□ -0.55
LDLR-211ENST00000560173 MXD3Q9BW11 206 aa11.62□□□□□ -0.55
LDLR-211ENST00000560173 PRDM10Q9NQV6 1147 aa11.62□□□□□ -0.55
LDLR-211ENST00000560173 IFIT1P09914 478 aaKnown RBP11.61□□□□□ -0.55
LDLR-211ENST00000560173 SLC5A1P13866 664 aa11.61□□□□□ -0.55
LDLR-211ENST00000560173 ZNF280AP59817 542 aaPredicted RBP11.61□□□□□ -0.55
LDLR-211ENST00000560173 GTF2IP78347 998 aa11.61□□□□□ -0.55
LDLR-211ENST00000560173 TTLL5Q6EMB2 1281 aa11.61□□□□□ -0.55
LDLR-211ENST00000560173 TDRD7Q8NHU6 1098 aaKnown RBP11.61□□□□□ -0.55
LDLR-211ENST00000560173 FBXW7Q969H0 707 aa11.61□□□□□ -0.55
LDLR-211ENST00000560173 CHMP4BQ9H444 224 aaKnown RBP11.61□□□□□ -0.55
LDLR-211ENST00000560173 MKRN1Q9UHC7 482 aaKnown RBP11.61□□□□□ -0.55
LDLR-211ENST00000560173 FAM205AQ6ZU69 1335 aa11.6□□□□□ -0.55
LDLR-211ENST00000560173 MYO3BQ8WXR4 1341 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms