RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 ATP6V1DQ9Y5K8 247 aa13.15□□□□□ -0.3
SPG11-217ENST00000559511 NHSQ6T4R5 1651 aa13.14□□□□□ -0.31
SPG11-217ENST00000559511 A0A0G2JLW4 131 aa13.14□□□□□ -0.31
SPG11-217ENST00000559511 IRS4O14654 1257 aaPredicted RBP13.14□□□□□ -0.31
SPG11-217ENST00000559511 RNF113AO15541 343 aaKnown RBP13.14□□□□□ -0.31
SPG11-217ENST00000559511 CTSWP56202 376 aa13.14□□□□□ -0.31
SPG11-217ENST00000559511 FKBP4Q02790 459 aaKnown RBP eCLIP13.14□□□□□ -0.31
SPG11-217ENST00000559511 TAF7LQ5H9L4 462 aa13.14□□□□□ -0.31
SPG11-217ENST00000559511 LARP1BQ659C4 914 aaKnown RBP13.14□□□□□ -0.31
SPG11-217ENST00000559511 Q6ZUG5 572 aa13.14□□□□□ -0.31
SPG11-217ENST00000559511 CDC37L1Q7L3B6 337 aa13.14□□□□□ -0.31
SPG11-217ENST00000559511 GREM2Q9H772 168 aa13.14□□□□□ -0.31
SPG11-217ENST00000559511 USP21Q9UK80 565 aa13.14□□□□□ -0.31
SPG11-217ENST00000559511 MYO5AQ9Y4I1 1855 aaKnown RBP13.14□□□□□ -0.31
SPG11-217ENST00000559511 M0R2C6 588 aa13.13□□□□□ -0.31
SPG11-217ENST00000559511 SCARF1Q14162 830 aa13.13□□□□□ -0.31
SPG11-217ENST00000559511 TTC39AQ5SRH9 613 aa13.13□□□□□ -0.31
SPG11-217ENST00000559511 TICAM2Q86XR7 235 aa13.13□□□□□ -0.31
SPG11-217ENST00000559511 DSCC1Q9BVC3 393 aa13.13□□□□□ -0.31
SPG11-217ENST00000559511 AKAP2Q9Y2D5 859 aa13.13□□□□□ -0.31
SPG11-217ENST00000559511 CAMTA2O94983 1202 aa13.13□□□□□ -0.31
SPG11-217ENST00000559511 HSPD1P10809 573 aaKnown RBP13.13□□□□□ -0.31
SPG11-217ENST00000559511 ITGA6P23229 1130 aa13.13□□□□□ -0.31
SPG11-217ENST00000559511 TPRNQ4KMQ1 711 aa13.13□□□□□ -0.31
SPG11-217ENST00000559511 CCDC158Q5M9N0 1113 aa13.13□□□□□ -0.31
SPG11-217ENST00000559511 ILDR1Q86SU0 546 aaPredicted RBP13.13□□□□□ -0.31
SPG11-217ENST00000559511 GTF3C6Q969F1 213 aa13.13□□□□□ -0.31
SPG11-217ENST00000559511 SYAP1Q96A49 352 aaPredicted RBP13.13□□□□□ -0.31
SPG11-217ENST00000559511 LRRC2Q9BYS8 371 aa13.13□□□□□ -0.31
SPG11-217ENST00000559511 RIPOR2Q9Y4F9 1068 aa13.13□□□□□ -0.31
SPG11-217ENST00000559511 TAF1LQ8IZX4 1826 aa13.12□□□□□ -0.31
SPG11-217ENST00000559511 UBE2HP62256 183 aa13.12□□□□□ -0.31
SPG11-217ENST00000559511 GORABQ5T7V8 394 aa13.12□□□□□ -0.31
SPG11-217ENST00000559511 PTF1AQ7RTS3 328 aa13.12□□□□□ -0.31
SPG11-217ENST00000559511 ANP32BQ92688 251 aaKnown RBP13.12□□□□□ -0.31
SPG11-217ENST00000559511 OSBP2Q969R2 916 aa13.12□□□□□ -0.31
SPG11-217ENST00000559511 TRIM44Q96DX7 344 aaPredicted RBP13.12□□□□□ -0.31
SPG11-217ENST00000559511 PDE8AO60658 829 aa13.12□□□□□ -0.31
SPG11-217ENST00000559511 SUSD4Q5VX71 490 aa13.12□□□□□ -0.31
SPG11-217ENST00000559511 PI16Q6UXB8 463 aa13.12□□□□□ -0.31
SPG11-217ENST00000559511 CERKQ8TCT0 537 aa13.12□□□□□ -0.31
SPG11-217ENST00000559511 LRP5O75197 1615 aa13.11□□□□□ -0.31
SPG11-217ENST00000559511 JAK2O60674 1132 aa13.11□□□□□ -0.31
SPG11-217ENST00000559511 FERMT3Q86UX7 667 aa13.11□□□□□ -0.31
SPG11-217ENST00000559511 BRF1Q92994 677 aa13.11□□□□□ -0.31
SPG11-217ENST00000559511 LY75O60449 1722 aa13.11□□□□□ -0.31
SPG11-217ENST00000559511 ARAP2Q8WZ64 1704 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 ANKRD18BA2A2Z9 1011 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 ESPNB1AK53 854 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 HSP90B1P14625 803 aaKnown RBP13.1□□□□□ -0.31
SPG11-217ENST00000559511 PDCP20941 246 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 ZAP70P43403 619 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 ATP2B3Q16720 1220 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 METTL24Q5JXM2 366 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 LDHAL6AQ6ZMR3 332 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 DHX32Q7L7V1 743 aaKnown RBP13.1□□□□□ -0.31
SPG11-217ENST00000559511 LINC00116Q8NCU8 138 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 RNF214Q8ND24 703 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 TSPY26PQ9H489 355 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 SCN7AQ01118 1682 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 E7EWF7 191 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 FOXP2O15409 715 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 KCNQ4P56696 695 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 TTLL5Q6EMB2 1281 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 FAM173BQ6P4H8 233 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 VGLL2Q8N8G2 317 aa13.1□□□□□ -0.31
SPG11-217ENST00000559511 MYH15Q9Y2K3 1946 aa13.09□□□□□ -0.31
SPG11-217ENST00000559511 PHF14O94880 888 aa13.09□□□□□ -0.31
SPG11-217ENST00000559511 HMGB1P09429 215 aaKnown RBP13.09□□□□□ -0.31
SPG11-217ENST00000559511 EXOSC10Q01780 885 aaKnown RBP13.09□□□□□ -0.31
SPG11-217ENST00000559511 SCRN1Q12765 414 aa13.09□□□□□ -0.31
SPG11-217ENST00000559511 CCDC183Q5T5S1 534 aa13.09□□□□□ -0.31
SPG11-217ENST00000559511 FAM177BA6PVY3 158 aa13.09□□□□□ -0.31
SPG11-217ENST00000559511 PDIA4P13667 645 aaKnown RBP13.09□□□□□ -0.31
SPG11-217ENST00000559511 CLCN1P35523 988 aa13.09□□□□□ -0.31
SPG11-217ENST00000559511 MCAMP43121 646 aa13.09□□□□□ -0.31
SPG11-217ENST00000559511 PDLIM2Q96JY6 352 aa13.09□□□□□ -0.31
SPG11-217ENST00000559511 AK7Q96M32 723 aa13.09□□□□□ -0.31
SPG11-217ENST00000559511 UTP14AQ9BVJ6 771 aaKnown RBP13.09□□□□□ -0.31
SPG11-217ENST00000559511 CNNM1Q9NRU3 951 aa13.09□□□□□ -0.31
SPG11-217ENST00000559511 TAF1P21675 1872 aa13.08□□□□□ -0.31
SPG11-217ENST00000559511 ABCC12Q96J65 1359 aa13.08□□□□□ -0.32
SPG11-217ENST00000559511 HCLS1P14317 486 aaPredicted RBP13.08□□□□□ -0.32
SPG11-217ENST00000559511 HSPA1LP34931 641 aa13.08□□□□□ -0.32
SPG11-217ENST00000559511 FGD1P98174 961 aa13.08□□□□□ -0.32
SPG11-217ENST00000559511 CSPP1Q1MSJ5 1256 aa13.08□□□□□ -0.32
SPG11-217ENST00000559511 WASHC4Q2M389 1173 aa13.08□□□□□ -0.32
SPG11-217ENST00000559511 PARP10Q53GL7 1025 aa13.08□□□□□ -0.32
SPG11-217ENST00000559511 FAM182BQ5T319 152 aa13.08□□□□□ -0.32
SPG11-217ENST00000559511 TTC6Q86TZ1 520 aa13.08□□□□□ -0.32
SPG11-217ENST00000559511 AGXT2Q9BYV1 514 aa13.08□□□□□ -0.32
SPG11-217ENST00000559511 PFKFB2O60825 505 aa13.07□□□□□ -0.32
SPG11-217ENST00000559511 NTSR2O95665 410 aa13.07□□□□□ -0.32
SPG11-217ENST00000559511 ZFYP08048 801 aaPredicted RBP13.07□□□□□ -0.32
SPG11-217ENST00000559511 APOBRQ0VD83 1088 aa13.07□□□□□ -0.32
SPG11-217ENST00000559511 DDX11Q96FC9 970 aa13.07□□□□□ -0.32
SPG11-217ENST00000559511 PUS7LQ9H0K6 701 aaKnown RBP13.07□□□□□ -0.32
SPG11-217ENST00000559511 NIP7Q9Y221 180 aaKnown RBP eCLIP13.07□□□□□ -0.32
SPG11-217ENST00000559511 A0A1B0GUL6 1792 aa13.07□□□□□ -0.32
SPG11-217ENST00000559511 KRT85P78386 507 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms