RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 NEUROD6Q96NK8 337 aa11.35□□□□□ -0.59
LDLR-210ENST00000559340 GNL3LQ9NVN8 582 aaKnown RBP11.35□□□□□ -0.59
LDLR-210ENST00000559340 COL4A1P02462 1669 aa11.34□□□□□ -0.59
LDLR-210ENST00000559340 MED23Q9ULK4 1368 aa11.34□□□□□ -0.59
LDLR-210ENST00000559340 APBB1O00213 710 aa11.34□□□□□ -0.59
LDLR-210ENST00000559340 PPIP5K2O43314 1243 aa11.34□□□□□ -0.59
LDLR-210ENST00000559340 IFIT2P09913 472 aaKnown RBP11.34□□□□□ -0.59
LDLR-210ENST00000559340 LMNB1P20700 586 aa11.34□□□□□ -0.59
LDLR-210ENST00000559340 IARSP41252 1262 aaKnown RBP11.34□□□□□ -0.59
LDLR-210ENST00000559340 TNNI3KQ59H18 835 aa11.34□□□□□ -0.59
LDLR-210ENST00000559340 ZNF804AQ7Z570 1209 aa11.34□□□□□ -0.59
LDLR-210ENST00000559340 VGLL2Q8N8G2 317 aa11.34□□□□□ -0.59
LDLR-210ENST00000559340 POLLQ9UGP5 575 aa11.34□□□□□ -0.59
LDLR-210ENST00000559340 FPGT-TNNI3KV9GXZ4 949 aa11.34□□□□□ -0.59
LDLR-210ENST00000559340 LTBP1Q14766 1721 aa11.34□□□□□ -0.59
LDLR-210ENST00000559340 A0A1B0GUL7 405 aa11.33□□□□□ -0.6
LDLR-210ENST00000559340 IGHDP01880 384 aa11.33□□□□□ -0.6
LDLR-210ENST00000559340 FGFR2P21802 821 aa11.33□□□□□ -0.6
LDLR-210ENST00000559340 HIBADHP31937 336 aaKnown RBP11.33□□□□□ -0.6
LDLR-210ENST00000559340 KIAA2012Q0VF49 1180 aa11.33□□□□□ -0.6
LDLR-210ENST00000559340 CCDC158Q5M9N0 1113 aa11.33□□□□□ -0.6
LDLR-210ENST00000559340 OLFM4Q6UX06 510 aa11.33□□□□□ -0.6
LDLR-210ENST00000559340 AACSQ86V21 672 aa11.33□□□□□ -0.6
LDLR-210ENST00000559340 NIM1KQ8IY84 436 aa11.33□□□□□ -0.6
LDLR-210ENST00000559340 LARGE2Q8N3Y3 721 aa11.33□□□□□ -0.6
LDLR-210ENST00000559340 ZNF526Q8TF50 670 aaPredicted RBP11.33□□□□□ -0.6
LDLR-210ENST00000559340 GPATCH3Q96I76 525 aa11.33□□□□□ -0.6
LDLR-210ENST00000559340 COA1Q9GZY4 146 aa11.33□□□□□ -0.6
LDLR-210ENST00000559340 ARAP2Q8WZ64 1704 aa11.32□□□□□ -0.6
LDLR-210ENST00000559340 NFKBIEO00221 500 aa11.32□□□□□ -0.6
LDLR-210ENST00000559340 RIMBP2O15034 1052 aa11.32□□□□□ -0.6
LDLR-210ENST00000559340 UQCRFS1P1P0C7P4 283 aa11.32□□□□□ -0.6
LDLR-210ENST00000559340 TIMM10P62072 90 aa11.32□□□□□ -0.6
LDLR-210ENST00000559340 PODNQ7Z5L7 613 aa11.32□□□□□ -0.6
LDLR-210ENST00000559340 XAGE2Q96GT9 111 aa11.32□□□□□ -0.6
LDLR-210ENST00000559340 IL1RAPL2Q9NP60 686 aa11.32□□□□□ -0.6
LDLR-210ENST00000559340 ZNF277Q9NRM2 450 aaPredicted RBP11.32□□□□□ -0.6
LDLR-210ENST00000559340 FRAT2O75474 233 aaPredicted RBP11.31□□□□□ -0.6
LDLR-210ENST00000559340 B4GALNT3Q6L9W6 998 aa11.31□□□□□ -0.6
LDLR-210ENST00000559340 FBXO33Q7Z6M2 555 aa11.31□□□□□ -0.6
LDLR-210ENST00000559340 SNED1Q8TER0 1413 aa11.31□□□□□ -0.6
LDLR-210ENST00000559340 ZNF609O15014 1411 aa11.3□□□□□ -0.6
LDLR-210ENST00000559340 KIF3CO14782 793 aa11.3□□□□□ -0.6
LDLR-210ENST00000559340 SEMA3EO15041 775 aa11.3□□□□□ -0.6
LDLR-210ENST00000559340 ZBTB22O15209 634 aa11.3□□□□□ -0.6
LDLR-210ENST00000559340 EIF6P56537 245 aaKnown RBP11.3□□□□□ -0.6
LDLR-210ENST00000559340 NUCB1Q02818 461 aa11.3□□□□□ -0.6
LDLR-210ENST00000559340 AOC3Q16853 763 aa11.3□□□□□ -0.6
LDLR-210ENST00000559340 TTC39AQ5SRH9 613 aa11.3□□□□□ -0.6
LDLR-210ENST00000559340 CHD1LQ86WJ1 897 aa11.3□□□□□ -0.6
LDLR-210ENST00000559340 EAF2Q96CJ1 260 aaPredicted RBP11.3□□□□□ -0.6
LDLR-210ENST00000559340 FAM84BQ96KN1 310 aaPredicted RBP11.3□□□□□ -0.6
LDLR-210ENST00000559340 CCDC8Q9H0W5 538 aaPredicted RBP11.3□□□□□ -0.6
LDLR-210ENST00000559340 BCL11AQ9H165 835 aa11.3□□□□□ -0.6
LDLR-210ENST00000559340 CD209Q9NNX6 404 aa11.3□□□□□ -0.6
LDLR-210ENST00000559340 ZNRF3Q9ULT6 936 aa11.3□□□□□ -0.6
LDLR-210ENST00000559340 ZC3H4Q9UPT8 1303 aaKnown RBP11.3□□□□□ -0.6
LDLR-210ENST00000559340 PSME4Q14997 1843 aa11.3□□□□□ -0.6
LDLR-210ENST00000559340 DUOX1Q9NRD9 1551 aa11.29□□□□□ -0.6
LDLR-210ENST00000559340 ERC2O15083 957 aa11.29□□□□□ -0.6
LDLR-210ENST00000559340 SMARCA5O60264 1052 aaPredicted RBP11.29□□□□□ -0.6
LDLR-210ENST00000559340 GYG1P46976 350 aa11.29□□□□□ -0.6
LDLR-210ENST00000559340 RASSF7Q02833 373 aa11.29□□□□□ -0.6
LDLR-210ENST00000559340 TNIP1Q15025 636 aa11.29□□□□□ -0.6
LDLR-210ENST00000559340 ZNF512BQ96KM6 892 aaPredicted RBP11.29□□□□□ -0.6
LDLR-210ENST00000559340 RNF181Q9P0P0 153 aa11.29□□□□□ -0.6
LDLR-210ENST00000559340 DENND2AQ9ULE3 1009 aa11.29□□□□□ -0.6
LDLR-210ENST00000559340 GOLGB1Q14789 3259 aaKnown RBP11.29□□□□□ -0.6
LDLR-210ENST00000559340 SNAP23O00161 211 aa11.28□□□□□ -0.6
LDLR-210ENST00000559340 ECE2O60344 883 aa11.28□□□□□ -0.6
LDLR-210ENST00000559340 IL1R1P14778 569 aa11.28□□□□□ -0.6
LDLR-210ENST00000559340 BCAMP50895 628 aa11.28□□□□□ -0.6
LDLR-210ENST00000559340 DOK7Q18PE1 504 aa11.28□□□□□ -0.6
LDLR-210ENST00000559340 C9orf131Q5VYM1 1079 aa11.28□□□□□ -0.6
LDLR-210ENST00000559340 CCDC102BQ68D86 513 aa11.28□□□□□ -0.6
LDLR-210ENST00000559340 DPY19L2Q6NUT2 758 aa11.28□□□□□ -0.6
LDLR-210ENST00000559340 TDRD7Q8NHU6 1098 aaKnown RBP11.28□□□□□ -0.6
LDLR-210ENST00000559340 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.28□□□□□ -0.6
LDLR-210ENST00000559340 GPR101Q96P66 508 aaPredicted RBP11.28□□□□□ -0.6
LDLR-210ENST00000559340 DBNDD2Q9BQY9 259 aa11.28□□□□□ -0.6
LDLR-210ENST00000559340 LNPKQ9C0E8 428 aa11.28□□□□□ -0.6
LDLR-210ENST00000559340 TTC41PQ6P2S7 1318 aa11.28□□□□□ -0.6
LDLR-210ENST00000559340 KDM2BQ8NHM5 1336 aa11.28□□□□□ -0.6
LDLR-210ENST00000559340 AK9Q5TCS8 1911 aa11.27□□□□□ -0.6
LDLR-210ENST00000559340 AKAP11Q9UKA4 1901 aa11.27□□□□□ -0.6
LDLR-210ENST00000559340 USP17L3A6NCW0 530 aa11.27□□□□□ -0.61
LDLR-210ENST00000559340 USP17L4A6NCW7 530 aa11.27□□□□□ -0.61
LDLR-210ENST00000559340 IGSF3O75054 1194 aa11.27□□□□□ -0.61
LDLR-210ENST00000559340 ADORA1P30542 326 aa11.27□□□□□ -0.61
LDLR-210ENST00000559340 MMP14P50281 582 aa11.27□□□□□ -0.61
LDLR-210ENST00000559340 TTLL5Q6EMB2 1281 aa11.27□□□□□ -0.61
LDLR-210ENST00000559340 USP17L1Q7RTZ2 530 aa11.27□□□□□ -0.61
LDLR-210ENST00000559340 TXNRD3Q86VQ6 643 aa11.27□□□□□ -0.61
LDLR-210ENST00000559340 ZGPATQ8N5A5 531 aaKnown RBP11.27□□□□□ -0.61
LDLR-210ENST00000559340 WDR66Q8TBY9 1149 aa11.27□□□□□ -0.61
LDLR-210ENST00000559340 TBC1D22AQ8WUA7 517 aa11.27□□□□□ -0.61
LDLR-210ENST00000559340 DBNDD1Q9H9R9 158 aa11.27□□□□□ -0.61
LDLR-210ENST00000559340 ECHDC1Q9NTX5 307 aa11.27□□□□□ -0.61
LDLR-210ENST00000559340 DBNLQ9UJU6 430 aaKnown RBP11.27□□□□□ -0.61
LDLR-210ENST00000559340 IRS2Q9Y4H2 1338 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms