RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 ZC3H15Q8WU90 426 aaKnown RBP12.87□□□□□ -0.35
USP3-207ENST00000558218 ANKIB1Q9P2G1 1089 aa12.87□□□□□ -0.35
USP3-207ENST00000558218 E9PSI1 815 aa12.86□□□□□ -0.35
USP3-207ENST00000558218 CSF1RP07333 972 aa12.86□□□□□ -0.35
USP3-207ENST00000558218 ATP2B4P23634 1241 aa12.86□□□□□ -0.35
USP3-207ENST00000558218 RPS12P25398 132 aaKnown RBP12.86□□□□□ -0.35
USP3-207ENST00000558218 UBE3BQ7Z3V4 1068 aa12.86□□□□□ -0.35
USP3-207ENST00000558218 JARID2Q92833 1246 aaPredicted RBP12.86□□□□□ -0.35
USP3-207ENST00000558218 MS4A4AQ96JQ5 239 aa12.86□□□□□ -0.35
USP3-207ENST00000558218 PGAP2Q9UHJ9 254 aa12.86□□□□□ -0.35
USP3-207ENST00000558218 GGA1Q9UJY5 639 aa12.86□□□□□ -0.35
USP3-207ENST00000558218 ADAMTSL1Q8N6G6 1762 aa12.86□□□□□ -0.35
USP3-207ENST00000558218 XDHP47989 1333 aa12.86□□□□□ -0.35
USP3-207ENST00000558218 TMEM88BA6NKF7 163 aa12.85□□□□□ -0.35
USP3-207ENST00000558218 CASP7P55210 303 aa12.85□□□□□ -0.35
USP3-207ENST00000558218 HTRA3P83110 453 aa12.85□□□□□ -0.35
USP3-207ENST00000558218 BEND3Q5T5X7 828 aa12.85□□□□□ -0.35
USP3-207ENST00000558218 SLAIN1Q8ND83 568 aa12.85□□□□□ -0.35
USP3-207ENST00000558218 BCL2L13Q9BXK5 485 aa12.85□□□□□ -0.35
USP3-207ENST00000558218 RTN4Q9NQC3 1192 aaKnown RBP12.85□□□□□ -0.35
USP3-207ENST00000558218 DUOX1Q9NRD9 1551 aa12.85□□□□□ -0.35
USP3-207ENST00000558218 MYH3P11055 1940 aa12.84□□□□□ -0.35
USP3-207ENST00000558218 YDJCA8MPS7 323 aa12.84□□□□□ -0.35
USP3-207ENST00000558218 H7C1D1 291 aa12.84□□□□□ -0.35
USP3-207ENST00000558218 ALDH1L1O75891 902 aa12.84□□□□□ -0.35
USP3-207ENST00000558218 RAD17O75943 681 aa12.84□□□□□ -0.35
USP3-207ENST00000558218 IGHMBP2P38935 993 aaKnown RBP12.84□□□□□ -0.35
USP3-207ENST00000558218 GMPSP49915 693 aaPredicted RBP12.84□□□□□ -0.35
USP3-207ENST00000558218 PODNQ7Z5L7 613 aa12.84□□□□□ -0.35
USP3-207ENST00000558218 GREM2Q9H772 168 aa12.84□□□□□ -0.35
USP3-207ENST00000558218 CNOT7Q9UIV1 285 aaKnown RBP12.84□□□□□ -0.35
USP3-207ENST00000558218 LTBP1Q14766 1721 aa12.83□□□□□ -0.36
USP3-207ENST00000558218 G3V3G9 751 aa12.83□□□□□ -0.36
USP3-207ENST00000558218 RIMBP2O15034 1052 aa12.83□□□□□ -0.36
USP3-207ENST00000558218 ECE2O60344 883 aa12.83□□□□□ -0.36
USP3-207ENST00000558218 UFL1O94874 794 aa12.83□□□□□ -0.36
USP3-207ENST00000558218 SLFN5Q08AF3 891 aa12.83□□□□□ -0.36
USP3-207ENST00000558218 MAP1SQ66K74 1059 aaPredicted RBP12.83□□□□□ -0.36
USP3-207ENST00000558218 MFRPQ9BY79 579 aa12.83□□□□□ -0.36
USP3-207ENST00000558218 ANKRD2Q9GZV1 360 aa12.83□□□□□ -0.36
USP3-207ENST00000558218 MINPP1Q9UNW1 487 aa12.83□□□□□ -0.36
USP3-207ENST00000558218 LEMD3Q9Y2U8 911 aa12.83□□□□□ -0.36
USP3-207ENST00000558218 VIL1P09327 827 aaKnown RBP12.82□□□□□ -0.36
USP3-207ENST00000558218 CT47B1P0C2W7 299 aaPredicted RBP12.82□□□□□ -0.36
USP3-207ENST00000558218 MMP14P50281 582 aa12.82□□□□□ -0.36
USP3-207ENST00000558218 CCDC85AQ96PX6 553 aaPredicted RBP12.82□□□□□ -0.36
USP3-207ENST00000558218 DBNDD1Q9H9R9 158 aa12.82□□□□□ -0.36
USP3-207ENST00000558218 ANKRD18BA2A2Z9 1011 aa12.81□□□□□ -0.36
USP3-207ENST00000558218 F6X3S4 739 aa12.81□□□□□ -0.36
USP3-207ENST00000558218 GRM8O00222 908 aa12.81□□□□□ -0.36
USP3-207ENST00000558218 PSMD14O00487 310 aa12.81□□□□□ -0.36
USP3-207ENST00000558218 ITGA6P23229 1130 aa12.81□□□□□ -0.36
USP3-207ENST00000558218 TRMT2AQ8IZ69 625 aaKnown RBP12.81□□□□□ -0.36
USP3-207ENST00000558218 AGBL3Q8NEM8 1001 aa12.81□□□□□ -0.36
USP3-207ENST00000558218 MPHOSPH8Q99549 860 aa12.81□□□□□ -0.36
USP3-207ENST00000558218 BOLA1Q9Y3E2 137 aa12.81□□□□□ -0.36
USP3-207ENST00000558218 PTPRCP08575 1304 aa12.81□□□□□ -0.36
USP3-207ENST00000558218 CCT4P50991 539 aaKnown RBP12.8□□□□□ -0.36
USP3-207ENST00000558218 FOXO4P98177 505 aa12.8□□□□□ -0.36
USP3-207ENST00000558218 IFIT5Q13325 482 aaKnown RBP12.8□□□□□ -0.36
USP3-207ENST00000558218 DOK7Q18PE1 504 aa12.8□□□□□ -0.36
USP3-207ENST00000558218 ALDH1L2Q3SY69 923 aa12.8□□□□□ -0.36
USP3-207ENST00000558218 CDC37L1Q7L3B6 337 aa12.8□□□□□ -0.36
USP3-207ENST00000558218 SRCIN1Q9C0H9 1055 aa12.8□□□□□ -0.36
USP3-207ENST00000558218 C9orf78Q9NZ63 289 aaPredicted RBP12.8□□□□□ -0.36
USP3-207ENST00000558218 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.8□□□□□ -0.36
USP3-207ENST00000558218 MED23Q9ULK4 1368 aa12.8□□□□□ -0.36
USP3-207ENST00000558218 COL4A1P02462 1669 aa12.8□□□□□ -0.36
USP3-207ENST00000558218 ZNF609O15014 1411 aa12.79□□□□□ -0.36
USP3-207ENST00000558218 RASSF10A6NK89 507 aa12.79□□□□□ -0.36
USP3-207ENST00000558218 HIRAP54198 1017 aaPredicted RBP12.79□□□□□ -0.36
USP3-207ENST00000558218 DEFB115Q30KQ5 88 aa12.79□□□□□ -0.36
USP3-207ENST00000558218 MICALL2Q8IY33 904 aa12.79□□□□□ -0.36
USP3-207ENST00000558218 MRPL50Q8N5N7 158 aaKnown RBP12.79□□□□□ -0.36
USP3-207ENST00000558218 COA1Q9GZY4 146 aa12.79□□□□□ -0.36
USP3-207ENST00000558218 CNTNAP1P78357 1384 aa12.79□□□□□ -0.36
USP3-207ENST00000558218 USP17L3A6NCW0 530 aa12.78□□□□□ -0.36
USP3-207ENST00000558218 USP17L4A6NCW7 530 aa12.78□□□□□ -0.36
USP3-207ENST00000558218 FAM161AQ3B820 660 aa12.78□□□□□ -0.36
USP3-207ENST00000558218 RSBN1LQ6PCB5 846 aaPredicted RBP12.78□□□□□ -0.36
USP3-207ENST00000558218 USP17L1Q7RTZ2 530 aa12.78□□□□□ -0.36
USP3-207ENST00000558218 HS6ST3Q8IZP7 471 aa12.78□□□□□ -0.36
USP3-207ENST00000558218 FBXO22Q8NEZ5 403 aa12.78□□□□□ -0.36
USP3-207ENST00000558218 KCNQ5Q9NR82 932 aa12.78□□□□□ -0.36
USP3-207ENST00000558218 UTYO14607 1347 aa12.78□□□□□ -0.36
USP3-207ENST00000558218 BRPF1P55201 1214 aaPredicted RBP12.77□□□□□ -0.37
USP3-207ENST00000558218 ZNF280AP59817 542 aaPredicted RBP12.77□□□□□ -0.37
USP3-207ENST00000558218 CCDC57Q2TAC2 916 aa12.77□□□□□ -0.37
USP3-207ENST00000558218 SLC4A10Q6U841 1118 aa12.77□□□□□ -0.37
USP3-207ENST00000558218 C15orf52Q6ZUT6 534 aaKnown RBP12.77□□□□□ -0.37
USP3-207ENST00000558218 SSH1Q8WYL5 1049 aa12.77□□□□□ -0.37
USP3-207ENST00000558218 HHIPL1Q96JK4 782 aa12.77□□□□□ -0.37
USP3-207ENST00000558218 MKRN1Q9UHC7 482 aaKnown RBP12.77□□□□□ -0.37
USP3-207ENST00000558218 ZNF804BA4D1E1 1349 aa12.77□□□□□ -0.37
USP3-207ENST00000558218 POTEMA6NI47 508 aa12.76□□□□□ -0.37
USP3-207ENST00000558218 CHRNDQ07001 517 aa12.76□□□□□ -0.37
USP3-207ENST00000558218 STRIP1Q5VSL9 837 aa12.76□□□□□ -0.37
USP3-207ENST00000558218 CST9Q5W186 159 aa12.76□□□□□ -0.37
USP3-207ENST00000558218 LMBR1LQ6UX01 489 aa12.76□□□□□ -0.37
USP3-207ENST00000558218 SAMD7Q7Z3H4 446 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms