RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 PTPN18Q99952 460 aa17.67■□□□□ 0.42
TMEM260-215ENST00000557626 ZC3H12CQ9C0D7 883 aaKnown RBP17.67■□□□□ 0.42
TMEM260-215ENST00000557626 TIMELESSQ9UNS1 1208 aa17.67■□□□□ 0.42
TMEM260-215ENST00000557626 GJB1P08034 283 aa17.66■□□□□ 0.42
TMEM260-215ENST00000557626 GPSM2P81274 684 aa17.66■□□□□ 0.42
TMEM260-215ENST00000557626 GMLQ99445 158 aa17.66■□□□□ 0.42
TMEM260-215ENST00000557626 KIF22Q14807 665 aa17.65■□□□□ 0.42
TMEM260-215ENST00000557626 TBC1D16Q8TBP0 767 aa17.65■□□□□ 0.42
TMEM260-215ENST00000557626 GUCD1Q96NT3 240 aa17.65■□□□□ 0.42
TMEM260-215ENST00000557626 RRP7AQ9Y3A4 280 aaKnown RBP17.65■□□□□ 0.42
TMEM260-215ENST00000557626 TAF1CQ15572 869 aaPredicted RBP17.64■□□□□ 0.41
TMEM260-215ENST00000557626 TDHQ8IZJ6 230 aa17.64■□□□□ 0.41
TMEM260-215ENST00000557626 ARHGAP39Q9C0H5 1083 aa17.64■□□□□ 0.41
TMEM260-215ENST00000557626 ZFYVE28Q9HCC9 887 aa17.64■□□□□ 0.41
TMEM260-215ENST00000557626 IRS2Q9Y4H2 1338 aa17.64■□□□□ 0.41
TMEM260-215ENST00000557626 ALPK3Q96L96 1907 aa17.64■□□□□ 0.41
TMEM260-215ENST00000557626 TESPA1A2RU30 521 aaPredicted RBP17.63■□□□□ 0.41
TMEM260-215ENST00000557626 WNT10BO00744 389 aa17.63■□□□□ 0.41
TMEM260-215ENST00000557626 DIAPH1O60610 1272 aaKnown RBP17.63■□□□□ 0.41
TMEM260-215ENST00000557626 CCL5P13501 91 aa17.63■□□□□ 0.41
TMEM260-215ENST00000557626 MYL6BP14649 208 aa17.63■□□□□ 0.41
TMEM260-215ENST00000557626 PRMT2P55345 433 aa17.63■□□□□ 0.41
TMEM260-215ENST00000557626 MAP3K11Q16584 847 aa17.63■□□□□ 0.41
TMEM260-215ENST00000557626 APOBEC3FQ8IUX4 373 aaKnown RBP17.63■□□□□ 0.41
TMEM260-215ENST00000557626 RNF208Q9H0X6 261 aa17.63■□□□□ 0.41
TMEM260-215ENST00000557626 TMEM265A0A087WTH1 108 aa17.62■□□□□ 0.41
TMEM260-215ENST00000557626 GNRH1P01148 92 aa17.62■□□□□ 0.41
TMEM260-215ENST00000557626 GJA5P36382 358 aa17.62■□□□□ 0.41
TMEM260-215ENST00000557626 POTEDQ86YR6 584 aa17.62■□□□□ 0.41
TMEM260-215ENST00000557626 PPP1R12BO60237 982 aaPredicted RBP17.61■□□□□ 0.41
TMEM260-215ENST00000557626 U2AF1L4Q8WU68 220 aaKnown RBP17.61■□□□□ 0.41
TMEM260-215ENST00000557626 TNFRSF10AO00220 468 aa17.6■□□□□ 0.41
TMEM260-215ENST00000557626 ECM2O94769 699 aaPredicted RBP17.6■□□□□ 0.41
TMEM260-215ENST00000557626 LACTBP83111 547 aaPredicted RBP17.6■□□□□ 0.41
TMEM260-215ENST00000557626 OGFOD1Q8N543 542 aa17.6■□□□□ 0.41
TMEM260-215ENST00000557626 CELF1Q92879 486 aaKnown RBP17.6■□□□□ 0.41
TMEM260-215ENST00000557626 PANK3Q9H999 370 aa17.6■□□□□ 0.41
TMEM260-215ENST00000557626 COL1A1P02452 1464 aaPredicted RBP17.59■□□□□ 0.41
TMEM260-215ENST00000557626 USP17L3A6NCW0 530 aa17.59■□□□□ 0.41
TMEM260-215ENST00000557626 USP17L4A6NCW7 530 aa17.59■□□□□ 0.41
TMEM260-215ENST00000557626 UNCXA6NJT0 531 aa17.59■□□□□ 0.41
TMEM260-215ENST00000557626 SASH1O94885 1247 aa17.59■□□□□ 0.41
TMEM260-215ENST00000557626 GRK4P32298 578 aa17.59■□□□□ 0.41
TMEM260-215ENST00000557626 USP17L1Q7RTZ2 530 aa17.59■□□□□ 0.41
TMEM260-215ENST00000557626 FAM161BQ96MY7 647 aa17.59■□□□□ 0.41
TMEM260-215ENST00000557626 ZMYND8Q9ULU4 1186 aaPredicted RBP17.59■□□□□ 0.41
TMEM260-215ENST00000557626 SSC5DA1L4H1 1573 aa17.58■□□□□ 0.41
TMEM260-215ENST00000557626 UFL1O94874 794 aa17.58■□□□□ 0.4
TMEM260-215ENST00000557626 FAM109BQ6ICB4 259 aaPredicted RBP17.58■□□□□ 0.4
TMEM260-215ENST00000557626 MAFAQ8NHW3 353 aaPredicted RBP17.58■□□□□ 0.4
TMEM260-215ENST00000557626 BIN2Q9UBW5 565 aaPredicted RBP17.58■□□□□ 0.4
TMEM260-215ENST00000557626 UBXN2AP68543 259 aa17.57■□□□□ 0.4
TMEM260-215ENST00000557626 C7orf61Q8IZ16 206 aa17.57■□□□□ 0.4
TMEM260-215ENST00000557626 RAET1EQ8TD07 263 aa17.57■□□□□ 0.4
TMEM260-215ENST00000557626 TRMT112Q9UI30 125 aaKnown RBP17.57■□□□□ 0.4
TMEM260-215ENST00000557626 RIPOR2Q9Y4F9 1068 aa17.57■□□□□ 0.4
TMEM260-215ENST00000557626 SH3TC1Q8TE82 1336 aa17.56■□□□□ 0.4
TMEM260-215ENST00000557626 WDHD1O75717 1129 aaPredicted RBP17.56■□□□□ 0.4
TMEM260-215ENST00000557626 MAGEA10P43363 369 aaPredicted RBP17.56■□□□□ 0.4
TMEM260-215ENST00000557626 IREB2P48200 963 aaKnown RBP17.56■□□□□ 0.4
TMEM260-215ENST00000557626 UBE2OQ9C0C9 1292 aaKnown RBP17.56■□□□□ 0.4
TMEM260-215ENST00000557626 COL4A1P02462 1669 aa17.55■□□□□ 0.4
TMEM260-215ENST00000557626 POTEB2H3BUK9 544 aa17.55■□□□□ 0.4
TMEM260-215ENST00000557626 U2SURPO15042 1029 aaKnown RBP17.55■□□□□ 0.4
TMEM260-215ENST00000557626 SGPL1O95470 568 aa17.55■□□□□ 0.4
TMEM260-215ENST00000557626 MAP3K12Q12852 859 aa17.55■□□□□ 0.4
TMEM260-215ENST00000557626 MCM10Q7L590 875 aa17.55■□□□□ 0.4
TMEM260-215ENST00000557626 BRI3BPQ8WY22 251 aa17.55■□□□□ 0.4
TMEM260-215ENST00000557626 RTF1Q92541 710 aaKnown RBP17.55■□□□□ 0.4
TMEM260-215ENST00000557626 MS4A4AQ96JQ5 239 aa17.55■□□□□ 0.4
TMEM260-215ENST00000557626 TRIM47Q96LD4 638 aa17.55■□□□□ 0.4
TMEM260-215ENST00000557626 DEFB129Q9H1M3 183 aa17.55■□□□□ 0.4
TMEM260-215ENST00000557626 PODXL2Q9NZ53 605 aa17.55■□□□□ 0.4
TMEM260-215ENST00000557626 ANKIB1Q9P2G1 1089 aa17.55■□□□□ 0.4
TMEM260-215ENST00000557626 SRRDQ9UH36 339 aa17.55■□□□□ 0.4
TMEM260-215ENST00000557626 GGA1Q9UJY5 639 aa17.55■□□□□ 0.4
TMEM260-215ENST00000557626 CCL15-CCL14A0A0B4J2E2 113 aa17.54■□□□□ 0.4
TMEM260-215ENST00000557626 CCL15Q16663 113 aa17.54■□□□□ 0.4
TMEM260-215ENST00000557626 NLRP10Q86W26 655 aa17.54■□□□□ 0.4
TMEM260-215ENST00000557626 OTOFQ9HC10 1997 aa17.53■□□□□ 0.4
TMEM260-215ENST00000557626 TLR2O60603 784 aa17.53■□□□□ 0.4
TMEM260-215ENST00000557626 ANKRD13AQ8IZ07 590 aa17.53■□□□□ 0.4
TMEM260-215ENST00000557626 FAM43AQ8N2R8 423 aa17.53■□□□□ 0.4
TMEM260-215ENST00000557626 OPTNQ96CV9 577 aa17.53■□□□□ 0.4
TMEM260-215ENST00000557626 PIEZO1Q92508 2521 aa17.53■□□□□ 0.4
TMEM260-215ENST00000557626 CDH23Q9H251 3354 aa17.53■□□□□ 0.4
TMEM260-215ENST00000557626 TFRCP02786 760 aaKnown RBP17.52■□□□□ 0.4
TMEM260-215ENST00000557626 SYN1P17600 705 aa17.52■□□□□ 0.4
TMEM260-215ENST00000557626 HOXD10P28358 340 aa17.52■□□□□ 0.4
TMEM260-215ENST00000557626 PODNQ7Z5L7 613 aa17.52■□□□□ 0.4
TMEM260-215ENST00000557626 SNX27Q96L92 541 aa17.52■□□□□ 0.4
TMEM260-215ENST00000557626 MXD3Q9BW11 206 aa17.52■□□□□ 0.4
TMEM260-215ENST00000557626 UNC93B1Q9H1C4 597 aa17.52■□□□□ 0.4
TMEM260-215ENST00000557626 ELP3Q9H9T3 547 aa17.52■□□□□ 0.4
TMEM260-215ENST00000557626 ZEB1P37275 1124 aaPredicted RBP17.51■□□□□ 0.39
TMEM260-215ENST00000557626 ZNF697Q5TEC3 545 aa17.51■□□□□ 0.39
TMEM260-215ENST00000557626 FBXW7Q969H0 707 aa17.51■□□□□ 0.39
TMEM260-215ENST00000557626 PAWRQ96IZ0 340 aaKnown RBP17.51■□□□□ 0.39
TMEM260-215ENST00000557626 MYPNQ86TC9 1320 aa17.5■□□□□ 0.39
TMEM260-215ENST00000557626 MYO3BQ8WXR4 1341 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms