RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 PHAXQ9H814 394 aaKnown RBP10.62□□□□□ -0.71
CCDC88C-214ENST00000557507 SSC5DA1L4H1 1573 aa10.61□□□□□ -0.71
CCDC88C-214ENST00000557507 PDE8AO60658 829 aa10.61□□□□□ -0.71
CCDC88C-214ENST00000557507 SASH1O94885 1247 aa10.61□□□□□ -0.71
CCDC88C-214ENST00000557507 PCCAP05165 728 aaPredicted RBP10.61□□□□□ -0.71
CCDC88C-214ENST00000557507 TM4SF4P48230 202 aa10.61□□□□□ -0.71
CCDC88C-214ENST00000557507 GOLGA2Q08379 1002 aa10.61□□□□□ -0.71
CCDC88C-214ENST00000557507 TTLL12Q14166 644 aaPredicted RBP10.61□□□□□ -0.71
CCDC88C-214ENST00000557507 NOM1Q5C9Z4 860 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-214ENST00000557507 DACT2Q5SW24 774 aa10.61□□□□□ -0.71
CCDC88C-214ENST00000557507 RIC3Q7Z5B4 369 aa10.61□□□□□ -0.71
CCDC88C-214ENST00000557507 MBIPQ9NS73 344 aa10.61□□□□□ -0.71
CCDC88C-214ENST00000557507 WNT10BO00744 389 aa10.6□□□□□ -0.71
CCDC88C-214ENST00000557507 ATP2B4P23634 1241 aa10.6□□□□□ -0.71
CCDC88C-214ENST00000557507 PTPN12Q05209 780 aaKnown RBP10.6□□□□□ -0.71
CCDC88C-214ENST00000557507 PODNQ7Z5L7 613 aa10.6□□□□□ -0.71
CCDC88C-214ENST00000557507 ANKRD18AQ8IVF6 992 aa10.6□□□□□ -0.71
CCDC88C-214ENST00000557507 CCDC191Q8NCU4 936 aa10.6□□□□□ -0.71
CCDC88C-214ENST00000557507 CFHR5Q9BXR6 569 aa10.6□□□□□ -0.71
CCDC88C-214ENST00000557507 FKTNO75072 461 aa10.59□□□□□ -0.71
CCDC88C-214ENST00000557507 SREBF2Q12772 1141 aa10.59□□□□□ -0.71
CCDC88C-214ENST00000557507 PRKG1Q13976 671 aa10.59□□□□□ -0.71
CCDC88C-214ENST00000557507 TXNRD3Q86VQ6 643 aa10.59□□□□□ -0.71
CCDC88C-214ENST00000557507 FBXW7Q969H0 707 aa10.59□□□□□ -0.71
CCDC88C-214ENST00000557507 RUNDC1Q96C34 613 aa10.59□□□□□ -0.71
CCDC88C-214ENST00000557507 CWC25Q9NXE8 425 aaPredicted RBP10.59□□□□□ -0.71
CCDC88C-214ENST00000557507 FZD1Q9UP38 647 aa10.59□□□□□ -0.71
CCDC88C-214ENST00000557507 COL1A1P02452 1464 aaPredicted RBP10.59□□□□□ -0.71
CCDC88C-214ENST00000557507 ZNF853P0CG23 659 aa10.58□□□□□ -0.72
CCDC88C-214ENST00000557507 HSP90B1P14625 803 aaKnown RBP10.58□□□□□ -0.72
CCDC88C-214ENST00000557507 KLRK1P26718 216 aa10.58□□□□□ -0.72
CCDC88C-214ENST00000557507 NF2P35240 595 aa10.58□□□□□ -0.72
CCDC88C-214ENST00000557507 CTSWP56202 376 aa10.58□□□□□ -0.72
CCDC88C-214ENST00000557507 RALBP1Q15311 655 aa10.58□□□□□ -0.72
CCDC88C-214ENST00000557507 MINPP1Q9UNW1 487 aa10.58□□□□□ -0.72
CCDC88C-214ENST00000557507 MYO3BQ8WXR4 1341 aa10.58□□□□□ -0.72
CCDC88C-214ENST00000557507 POTEFA5A3E0 1075 aa10.57□□□□□ -0.72
CCDC88C-214ENST00000557507 ELL2O00472 640 aaPredicted RBP10.57□□□□□ -0.72
CCDC88C-214ENST00000557507 CCT4P50991 539 aaKnown RBP10.57□□□□□ -0.72
CCDC88C-214ENST00000557507 LDLRAD1Q5T700 205 aa10.57□□□□□ -0.72
CCDC88C-214ENST00000557507 STRIP1Q5VSL9 837 aa10.57□□□□□ -0.72
CCDC88C-214ENST00000557507 SPRYD7Q5W111 196 aa10.57□□□□□ -0.72
CCDC88C-214ENST00000557507 CDC5LQ99459 802 aaKnown RBP10.57□□□□□ -0.72
CCDC88C-214ENST00000557507 METTL22Q9BUU2 404 aaPredicted RBP10.57□□□□□ -0.72
CCDC88C-214ENST00000557507 GREM2Q9H772 168 aa10.57□□□□□ -0.72
CCDC88C-214ENST00000557507 ANGEL1Q9UNK9 670 aaKnown RBP10.57□□□□□ -0.72
CCDC88C-214ENST00000557507 MYBBP1AQ9BQG0 1328 aaKnown RBP10.57□□□□□ -0.72
CCDC88C-214ENST00000557507 IGKV5-2P06315 115 aa10.56□□□□□ -0.72
CCDC88C-214ENST00000557507 ARMC9Q7Z3E5 817 aa10.56□□□□□ -0.72
CCDC88C-214ENST00000557507 APOBEC3FQ8IUX4 373 aaKnown RBP10.56□□□□□ -0.72
CCDC88C-214ENST00000557507 KIAA0825Q8IV33 1275 aa10.56□□□□□ -0.72
CCDC88C-214ENST00000557507 OGFOD1Q8N543 542 aa10.56□□□□□ -0.72
CCDC88C-214ENST00000557507 TTLL11Q8NHH1 800 aa10.56□□□□□ -0.72
CCDC88C-214ENST00000557507 ZBED3Q96IU2 234 aaPredicted RBP10.56□□□□□ -0.72
CCDC88C-214ENST00000557507 COA1Q9GZY4 146 aa10.56□□□□□ -0.72
CCDC88C-214ENST00000557507 BSDC1Q9NW68 430 aaPredicted RBP10.56□□□□□ -0.72
CCDC88C-214ENST00000557507 ADAMTS8Q9UP79 889 aa10.56□□□□□ -0.72
CCDC88C-214ENST00000557507 TRIM17Q9Y577 477 aa10.56□□□□□ -0.72
CCDC88C-214ENST00000557507 MYH13Q9UKX3 1938 aa10.56□□□□□ -0.72
CCDC88C-214ENST00000557507 IGF2BP3O00425 579 aaKnown RBP eCLIP10.55□□□□□ -0.72
CCDC88C-214ENST00000557507 WDR43Q15061 677 aaKnown RBP eCLIP10.55□□□□□ -0.72
CCDC88C-214ENST00000557507 HABP4Q5JVS0 413 aaKnown RBP10.55□□□□□ -0.72
CCDC88C-214ENST00000557507 OTOP1Q7RTM1 612 aa10.55□□□□□ -0.72
CCDC88C-214ENST00000557507 IFNL1Q8IU54 200 aa10.55□□□□□ -0.72
CCDC88C-214ENST00000557507 C8orf58Q8NAV2 365 aa10.55□□□□□ -0.72
CCDC88C-214ENST00000557507 GCC1Q96CN9 775 aa10.55□□□□□ -0.72
CCDC88C-214ENST00000557507 CLMNQ96JQ2 1002 aa10.55□□□□□ -0.72
CCDC88C-214ENST00000557507 IFT57Q9NWB7 429 aa10.55□□□□□ -0.72
CCDC88C-214ENST00000557507 MAP3K2Q9Y2U5 619 aa10.55□□□□□ -0.72
CCDC88C-214ENST00000557507 PCDHAC2Q9Y5I4 1007 aa10.55□□□□□ -0.72
CCDC88C-214ENST00000557507 CAP1Q01518 475 aa10.54□□□□□ -0.72
CCDC88C-214ENST00000557507 CWF19L2Q2TBE0 894 aaKnown RBP10.54□□□□□ -0.72
CCDC88C-214ENST00000557507 TTLL5Q6EMB2 1281 aa10.54□□□□□ -0.72
CCDC88C-214ENST00000557507 WNK4Q96J92 1243 aa10.54□□□□□ -0.72
CCDC88C-214ENST00000557507 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.54□□□□□ -0.72
CCDC88C-214ENST00000557507 ZNF804BA4D1E1 1349 aa10.54□□□□□ -0.72
CCDC88C-214ENST00000557507 AOX1Q06278 1338 aa10.54□□□□□ -0.72
CCDC88C-214ENST00000557507 MGAMO43451 1857 aa10.53□□□□□ -0.72
CCDC88C-214ENST00000557507 PI4KAP2A4QPH2 592 aa10.53□□□□□ -0.72
CCDC88C-214ENST00000557507 MANSC4A6NHS7 340 aaPredicted RBP10.53□□□□□ -0.72
CCDC88C-214ENST00000557507 DDX58O95786 925 aaKnown RBP10.53□□□□□ -0.72
CCDC88C-214ENST00000557507 ALDH1A1P00352 501 aa10.53□□□□□ -0.72
CCDC88C-214ENST00000557507 GJA5P36382 358 aa10.53□□□□□ -0.72
CCDC88C-214ENST00000557507 GTF2IP78347 998 aa10.53□□□□□ -0.72
CCDC88C-214ENST00000557507 MAP3K11Q16584 847 aa10.53□□□□□ -0.72
CCDC88C-214ENST00000557507 UBE3BQ7Z3V4 1068 aa10.53□□□□□ -0.72
CCDC88C-214ENST00000557507 CERS5Q8N5B7 392 aa10.53□□□□□ -0.72
CCDC88C-214ENST00000557507 PI4KAP1Q8N8J0 262 aa10.53□□□□□ -0.72
CCDC88C-214ENST00000557507 CD99L2Q8TCZ2 262 aa10.53□□□□□ -0.72
CCDC88C-214ENST00000557507 DEFB129Q9H1M3 183 aa10.53□□□□□ -0.72
CCDC88C-214ENST00000557507 LEMD3Q9Y2U8 911 aa10.53□□□□□ -0.72
CCDC88C-214ENST00000557507 IRS2Q9Y4H2 1338 aa10.53□□□□□ -0.72
CCDC88C-214ENST00000557507 SZT2Q5T011 3432 aa10.52□□□□□ -0.72
CCDC88C-214ENST00000557507 NEURL1BA8MQ27 555 aa10.52□□□□□ -0.73
CCDC88C-214ENST00000557507 ZBTB48P10074 688 aaPredicted RBP10.52□□□□□ -0.73
CCDC88C-214ENST00000557507 GNAI1P63096 354 aa10.52□□□□□ -0.73
CCDC88C-214ENST00000557507 CRHR2Q13324 411 aa10.52□□□□□ -0.73
CCDC88C-214ENST00000557507 KSR2Q6VAB6 950 aa10.52□□□□□ -0.73
CCDC88C-214ENST00000557507 TSPYL6Q8N831 410 aa10.52□□□□□ -0.73
CCDC88C-214ENST00000557507 PTPN22Q9Y2R2 807 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms