RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	CCZ1B	P86790	482 aa		19.01	■□□□□ 0.63
SHMT2-231	ENST00000557433	CCZ1	P86791	482 aa	Predicted RBP	19.01	■□□□□ 0.63
SHMT2-231	ENST00000557433	ADAL	Q6DHV7	355 aa		19.01	■□□□□ 0.63
SHMT2-231	ENST00000557433	CCDC150	Q8NCX0	1101 aa		19.01	■□□□□ 0.63
SHMT2-231	ENST00000557433	MRPS27	Q92552	414 aa	Known RBP	19.01	■□□□□ 0.63
SHMT2-231	ENST00000557433	USP28	Q96RU2	1077 aa		19.01	■□□□□ 0.63
SHMT2-231	ENST00000557433	DNAJC2	Q99543	621 aa	Known RBP	19.01	■□□□□ 0.63
SHMT2-231	ENST00000557433	GOLPH3L	Q9H4A5	285 aa		19.01	■□□□□ 0.63
SHMT2-231	ENST00000557433	SCN11A	Q9UI33	1791 aa		19.01	■□□□□ 0.63
SHMT2-231	ENST00000557433	SPEF2	Q9C093	1822 aa		19	■□□□□ 0.63
SHMT2-231	ENST00000557433	CTDNEP1	O95476	244 aa		19	■□□□□ 0.63
SHMT2-231	ENST00000557433	EVC	P57679	992 aa		19	■□□□□ 0.63
SHMT2-231	ENST00000557433	STOX1	Q6ZVD7	989 aa		19	■□□□□ 0.63
SHMT2-231	ENST00000557433	CCAR2	Q8N163	923 aa	Known RBP	19	■□□□□ 0.63
SHMT2-231	ENST00000557433	FSIP1	Q8NA03	581 aa		19	■□□□□ 0.63
SHMT2-231	ENST00000557433	DBNDD2	Q9BQY9	259 aa		19	■□□□□ 0.63
SHMT2-231	ENST00000557433	SETD1B	Q9UPS6	1966 aa	Known RBP	19	■□□□□ 0.63
SHMT2-231	ENST00000557433	MST1R	Q04912	1400 aa		19	■□□□□ 0.63
SHMT2-231	ENST00000557433	SNRPA1	P09661	255 aa	Known RBP	19	■□□□□ 0.63
SHMT2-231	ENST00000557433	TPM4	P67936	248 aa		19	■□□□□ 0.63
SHMT2-231	ENST00000557433	LRRFIP1	Q32MZ4	808 aa	Known RBP	19	■□□□□ 0.63
SHMT2-231	ENST00000557433	ZMYM1	Q5SVZ6	1142 aa		19	■□□□□ 0.63
SHMT2-231	ENST00000557433	ME1	P48163	572 aa		18.99	■□□□□ 0.63
SHMT2-231	ENST00000557433	ZRSR1	Q15695	479 aa	Known RBP	18.99	■□□□□ 0.63
SHMT2-231	ENST00000557433	CCDC129	Q6ZRS4	1044 aa		18.99	■□□□□ 0.63
SHMT2-231	ENST00000557433	LRP10	Q7Z4F1	713 aa		18.99	■□□□□ 0.63
SHMT2-231	ENST00000557433	FMR1NB	Q8N0W7	255 aa	Predicted RBP	18.99	■□□□□ 0.63
SHMT2-231	ENST00000557433	KCNG4	Q8TDN1	519 aa		18.99	■□□□□ 0.63
SHMT2-231	ENST00000557433	YEATS4	O95619	227 aa		18.98	■□□□□ 0.63
SHMT2-231	ENST00000557433	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	18.98	■□□□□ 0.63
SHMT2-231	ENST00000557433	LAMA4	Q16363	1823 aa		18.98	■□□□□ 0.63
SHMT2-231	ENST00000557433	PSD	A5PKW4	1024 aa	Predicted RBP	18.98	■□□□□ 0.63
SHMT2-231	ENST00000557433	DHX16	O60231	1041 aa	Known RBP	18.98	■□□□□ 0.63
SHMT2-231	ENST00000557433	MYL6B	P14649	208 aa		18.98	■□□□□ 0.63
SHMT2-231	ENST00000557433	APOBR	Q0VD83	1088 aa		18.98	■□□□□ 0.63
SHMT2-231	ENST00000557433	RAPGEF4	Q8WZA2	1011 aa		18.98	■□□□□ 0.63
SHMT2-231	ENST00000557433	PAG1	Q9NWQ8	432 aa		18.98	■□□□□ 0.63
SHMT2-231	ENST00000557433	ZHX1	Q9UKY1	873 aa	Predicted RBP	18.98	■□□□□ 0.63
SHMT2-231	ENST00000557433	CCP110	O43303	1012 aa		18.97	■□□□□ 0.63
SHMT2-231	ENST00000557433	SLU7	O95391	586 aa	Known RBP	18.97	■□□□□ 0.63
SHMT2-231	ENST00000557433	PDIA3	P30101	505 aa	Known RBP	18.97	■□□□□ 0.63
SHMT2-231	ENST00000557433	CEBPZ	Q03701	1054 aa	Known RBP	18.97	■□□□□ 0.63
SHMT2-231	ENST00000557433	DDX46	Q7L014	1031 aa	Known RBP	18.97	■□□□□ 0.63
SHMT2-231	ENST00000557433	CREBRF	Q8IUR6	639 aa		18.97	■□□□□ 0.63
SHMT2-231	ENST00000557433	SEC62	Q99442	399 aa	Known RBP	18.97	■□□□□ 0.63
SHMT2-231	ENST00000557433	CARMIL3	Q8ND23	1372 aa		18.97	■□□□□ 0.63
SHMT2-231	ENST00000557433	KDM6A	O15550	1401 aa	Predicted RBP	18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433		E7EWF7	191 aa		18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433	UBE3B	Q7Z3V4	1068 aa		18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433	BRAP	Q7Z569	592 aa		18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433	KRT222	Q8N1A0	295 aa		18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433	PLBD2	Q8NHP8	589 aa		18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433	ZNF592	Q92610	1267 aa		18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433	SDF4	Q9BRK5	362 aa		18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433	POLR3E	Q9NVU0	708 aa		18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433	USP16	Q9Y5T5	823 aa		18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433	AFDN	P55196	1824 aa	Known RBP	18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433	ERBB3	P21860	1342 aa		18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433	CASP7	P55210	303 aa		18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433	FILIP1	Q7Z7B0	1213 aa		18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433	ANKLE2	Q86XL3	938 aa		18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433	AOPEP	Q8N6M6	819 aa		18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433	KIAA1468	Q9P260	1216 aa		18.96	■□□□□ 0.63
SHMT2-231	ENST00000557433		A0A087WZG4	1122 aa		18.95	■□□□□ 0.62
SHMT2-231	ENST00000557433	IL15	P40933	162 aa	Predicted RBP	18.95	■□□□□ 0.62
SHMT2-231	ENST00000557433	TTC5	Q8N0Z6	440 aa		18.95	■□□□□ 0.62
SHMT2-231	ENST00000557433	LRRC2	Q9BYS8	371 aa		18.95	■□□□□ 0.62
SHMT2-231	ENST00000557433	PCDHA7	Q9UN72	937 aa		18.95	■□□□□ 0.62
SHMT2-231	ENST00000557433	RNF113A	O15541	343 aa	Known RBP	18.94	■□□□□ 0.62
SHMT2-231	ENST00000557433	HSPD1	P10809	573 aa	Known RBP	18.94	■□□□□ 0.62
SHMT2-231	ENST00000557433	PHKG2	P15735	406 aa		18.94	■□□□□ 0.62
SHMT2-231	ENST00000557433	TAT	P17735	454 aa	Predicted RBP	18.94	■□□□□ 0.62
SHMT2-231	ENST00000557433	LINC00301	Q8NCQ3	95 aa		18.94	■□□□□ 0.62
SHMT2-231	ENST00000557433	FMNL2	Q96PY5	1086 aa		18.94	■□□□□ 0.62
SHMT2-231	ENST00000557433	L2HGDH	Q9H9P8	463 aa		18.94	■□□□□ 0.62
SHMT2-231	ENST00000557433	ZNF215	Q9UL58	517 aa	Predicted RBP	18.94	■□□□□ 0.62
SHMT2-231	ENST00000557433	ARFGEF2	Q9Y6D5	1785 aa		18.94	■□□□□ 0.62
SHMT2-231	ENST00000557433	ILDR1	Q86SU0	546 aa	Predicted RBP	18.94	■□□□□ 0.62
SHMT2-231	ENST00000557433	IFNL2	Q8IZJ0	200 aa		18.94	■□□□□ 0.62
SHMT2-231	ENST00000557433	ZNF496	Q96IT1	587 aa	Predicted RBP	18.94	■□□□□ 0.62
SHMT2-231	ENST00000557433	ATG3	Q9NT62	314 aa		18.94	■□□□□ 0.62
SHMT2-231	ENST00000557433	FAM53C	Q9NYF3	392 aa		18.94	■□□□□ 0.62
SHMT2-231	ENST00000557433	KIF1A	Q12756	1690 aa		18.93	■□□□□ 0.62
SHMT2-231	ENST00000557433	TRPM3	Q9HCF6	1732 aa	Predicted RBP	18.93	■□□□□ 0.62
SHMT2-231	ENST00000557433	USP27X	A6NNY8	438 aa		18.93	■□□□□ 0.62
SHMT2-231	ENST00000557433	MYO1B	O43795	1136 aa		18.93	■□□□□ 0.62
SHMT2-231	ENST00000557433	SLC39A6	Q13433	755 aa		18.93	■□□□□ 0.62
SHMT2-231	ENST00000557433	STK38	Q15208	465 aa		18.93	■□□□□ 0.62
SHMT2-231	ENST00000557433	SF3A1	Q15459	793 aa	Known RBP	18.93	■□□□□ 0.62
SHMT2-231	ENST00000557433	WDR19	Q8NEZ3	1342 aa		18.93	■□□□□ 0.62
SHMT2-231	ENST00000557433		H7C1W4	665 aa		18.92	■□□□□ 0.62
SHMT2-231	ENST00000557433	GOLIM4	O00461	696 aa		18.92	■□□□□ 0.62
SHMT2-231	ENST00000557433	CCT2	P78371	535 aa	Known RBP	18.92	■□□□□ 0.62
SHMT2-231	ENST00000557433	ARID5B	Q14865	1188 aa		18.92	■□□□□ 0.62
SHMT2-231	ENST00000557433	NBPF11	Q86T75	865 aa		18.92	■□□□□ 0.62
SHMT2-231	ENST00000557433	DCAF5	Q96JK2	942 aa		18.92	■□□□□ 0.62
SHMT2-231	ENST00000557433	FTO	Q9C0B1	505 aa	Known RBP eCLIP	18.92	■□□□□ 0.62
SHMT2-231	ENST00000557433	IKBKB	O14920	756 aa		18.92	■□□□□ 0.62
SHMT2-231	ENST00000557433	CIAO1	O76071	339 aa		18.92	■□□□□ 0.62
SHMT2-231	ENST00000557433	ZFY	P08048	801 aa	Predicted RBP	18.92	■□□□□ 0.62

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